Strain Fitness in Marinobacter adhaerens HP15 around HP15_1923

Experiment: m.b. Phosphomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1921 and HP15_1922 overlap by 4 nucleotidesHP15_1922 and HP15_1923 overlap by 11 nucleotidesHP15_1923 and HP15_1924 are separated by 0 nucleotidesHP15_1924 and HP15_1925 are separated by 126 nucleotides HP15_1921: HP15_1921 - conserved hypothetical protein, secreted, at 2,036,715 to 2,038,073 _1921 HP15_1922: HP15_1922 - polysaccharide biosynthesis protein, at 2,038,070 to 2,038,948 _1922 HP15_1923: HP15_1923 - PEP-CTERM locus polysaccharide chain length determinant, at 2,038,938 to 2,040,518 _1923 HP15_1924: HP15_1924 - polysaccharide export protein, at 2,040,519 to 2,041,067 _1924 HP15_1925: HP15_1925 - undecaprenyl-phosphate galactosephosphotransferase, at 2,041,194 to 2,042,552 _1925 Position (kb) 2038 2039 2040 2041Strain fitness (log2 ratio) -1 0 1 2at 2037.962 kb on + strandat 2037.962 kb on - strandat 2038.017 kb on + strandat 2038.113 kb on - strandat 2038.204 kb on + strand, within HP15_1922at 2038.224 kb on - strand, within HP15_1922at 2038.355 kb on - strand, within HP15_1922at 2038.585 kb on + strand, within HP15_1922at 2038.587 kb on + strand, within HP15_1922at 2038.735 kb on + strand, within HP15_1922at 2038.853 kb on - strand, within HP15_1922at 2038.853 kb on - strand, within HP15_1922at 2038.919 kb on - strandat 2038.923 kb on + strandat 2039.002 kb on - strandat 2039.102 kb on + strand, within HP15_1923at 2039.113 kb on + strand, within HP15_1923at 2039.167 kb on - strand, within HP15_1923at 2039.237 kb on - strand, within HP15_1923at 2039.276 kb on + strand, within HP15_1923at 2039.294 kb on + strand, within HP15_1923at 2039.382 kb on - strand, within HP15_1923at 2039.412 kb on - strand, within HP15_1923at 2039.511 kb on + strand, within HP15_1923at 2039.511 kb on + strand, within HP15_1923at 2039.707 kb on + strand, within HP15_1923at 2039.779 kb on + strand, within HP15_1923at 2039.787 kb on + strand, within HP15_1923at 2039.787 kb on - strand, within HP15_1923at 2039.997 kb on - strand, within HP15_1923at 2040.067 kb on - strand, within HP15_1923at 2040.067 kb on - strand, within HP15_1923at 2040.152 kb on + strand, within HP15_1923at 2040.160 kb on - strand, within HP15_1923at 2040.214 kb on + strand, within HP15_1923at 2040.295 kb on + strand, within HP15_1923at 2040.337 kb on - strand, within HP15_1923at 2040.358 kb on + strand, within HP15_1923at 2040.358 kb on + strand, within HP15_1923at 2040.366 kb on - strandat 2040.366 kb on - strandat 2040.366 kb on - strandat 2040.671 kb on - strand, within HP15_1924at 2040.695 kb on + strand, within HP15_1924at 2040.723 kb on + strand, within HP15_1924at 2040.731 kb on - strand, within HP15_1924at 2040.731 kb on - strand, within HP15_1924at 2040.879 kb on - strand, within HP15_1924at 2040.980 kb on + strand, within HP15_1924at 2040.993 kb on - strand, within HP15_1924at 2041.024 kb on - strandat 2041.132 kb on + strandat 2041.140 kb on - strandat 2041.160 kb on + strandat 2041.335 kb on - strand, within HP15_1925at 2041.439 kb on + strand, within HP15_1925at 2041.450 kb on + strand, within HP15_1925at 2041.467 kb on + strand, within HP15_1925

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml
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2,037,962 + +0.6
2,037,962 - +0.1
2,038,017 + -0.2
2,038,113 - -0.0
2,038,204 + HP15_1922 0.15 +0.8
2,038,224 - HP15_1922 0.18 +0.0
2,038,355 - HP15_1922 0.32 +0.5
2,038,585 + HP15_1922 0.59 +0.7
2,038,587 + HP15_1922 0.59 +0.0
2,038,735 + HP15_1922 0.76 +1.4
2,038,853 - HP15_1922 0.89 +0.6
2,038,853 - HP15_1922 0.89 +1.9
2,038,919 - +0.2
2,038,923 + -0.5
2,039,002 - -0.0
2,039,102 + HP15_1923 0.10 +0.2
2,039,113 + HP15_1923 0.11 +0.6
2,039,167 - HP15_1923 0.14 +0.5
2,039,237 - HP15_1923 0.19 +0.2
2,039,276 + HP15_1923 0.21 +0.4
2,039,294 + HP15_1923 0.23 +0.1
2,039,382 - HP15_1923 0.28 +0.2
2,039,412 - HP15_1923 0.30 +1.6
2,039,511 + HP15_1923 0.36 +0.1
2,039,511 + HP15_1923 0.36 +0.8
2,039,707 + HP15_1923 0.49 +0.2
2,039,779 + HP15_1923 0.53 -0.2
2,039,787 + HP15_1923 0.54 +0.5
2,039,787 - HP15_1923 0.54 +0.3
2,039,997 - HP15_1923 0.67 -0.1
2,040,067 - HP15_1923 0.71 -0.2
2,040,067 - HP15_1923 0.71 +1.4
2,040,152 + HP15_1923 0.77 -0.1
2,040,160 - HP15_1923 0.77 +0.6
2,040,214 + HP15_1923 0.81 +0.1
2,040,295 + HP15_1923 0.86 +0.3
2,040,337 - HP15_1923 0.88 +0.1
2,040,358 + HP15_1923 0.90 -0.4
2,040,358 + HP15_1923 0.90 -0.1
2,040,366 - -0.2
2,040,366 - +0.0
2,040,366 - -0.0
2,040,671 - HP15_1924 0.28 -0.1
2,040,695 + HP15_1924 0.32 -0.1
2,040,723 + HP15_1924 0.37 +0.0
2,040,731 - HP15_1924 0.39 +0.7
2,040,731 - HP15_1924 0.39 +0.7
2,040,879 - HP15_1924 0.66 +1.3
2,040,980 + HP15_1924 0.84 -0.7
2,040,993 - HP15_1924 0.86 -0.1
2,041,024 - +0.3
2,041,132 + -0.2
2,041,140 - +0.3
2,041,160 + -0.6
2,041,335 - HP15_1925 0.10 -0.1
2,041,439 + HP15_1925 0.18 -0.1
2,041,450 + HP15_1925 0.19 +0.3
2,041,467 + HP15_1925 0.20 -0.2

Or see this region's nucleotide sequence