Experiment: m.b. Phosphomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1921 and HP15_1922 overlap by 4 nucleotides HP15_1922 and HP15_1923 overlap by 11 nucleotides
HP15_1921: HP15_1921 - conserved hypothetical protein, secreted, at 2,036,715 to 2,038,073
_1921
HP15_1922: HP15_1922 - polysaccharide biosynthesis protein, at 2,038,070 to 2,038,948
_1922
HP15_1923: HP15_1923 - PEP-CTERM locus polysaccharide chain length determinant, at 2,038,938 to 2,040,518
_1923
Position (kb)
2038
2039 Strain fitness (log2 ratio)
-1
0
1
2 at 2037.192 kb on + strand, within HP15_1921 at 2037.249 kb on - strand, within HP15_1921 at 2037.487 kb on + strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.520 kb on + strand, within HP15_1921 at 2037.548 kb on + strand, within HP15_1921 at 2037.548 kb on + strand, within HP15_1921 at 2037.556 kb on - strand, within HP15_1921 at 2037.566 kb on - strand, within HP15_1921 at 2037.579 kb on + strand, within HP15_1921 at 2037.579 kb on + strand, within HP15_1921 at 2037.587 kb on - strand, within HP15_1921 at 2037.606 kb on + strand, within HP15_1921 at 2037.670 kb on + strand, within HP15_1921 at 2037.780 kb on + strand, within HP15_1921 at 2037.814 kb on + strand, within HP15_1921 at 2037.962 kb on + strand at 2037.962 kb on - strand at 2038.017 kb on + strand at 2038.113 kb on - strand at 2038.204 kb on + strand, within HP15_1922 at 2038.224 kb on - strand, within HP15_1922 at 2038.355 kb on - strand, within HP15_1922 at 2038.585 kb on + strand, within HP15_1922 at 2038.587 kb on + strand, within HP15_1922 at 2038.735 kb on + strand, within HP15_1922 at 2038.853 kb on - strand, within HP15_1922 at 2038.853 kb on - strand, within HP15_1922 at 2038.919 kb on - strand at 2038.923 kb on + strand at 2039.002 kb on - strand at 2039.102 kb on + strand, within HP15_1923 at 2039.113 kb on + strand, within HP15_1923 at 2039.167 kb on - strand, within HP15_1923 at 2039.237 kb on - strand, within HP15_1923 at 2039.276 kb on + strand, within HP15_1923 at 2039.294 kb on + strand, within HP15_1923 at 2039.382 kb on - strand, within HP15_1923 at 2039.412 kb on - strand, within HP15_1923 at 2039.511 kb on + strand, within HP15_1923 at 2039.511 kb on + strand, within HP15_1923 at 2039.707 kb on + strand, within HP15_1923 at 2039.779 kb on + strand, within HP15_1923 at 2039.787 kb on + strand, within HP15_1923 at 2039.787 kb on - strand, within HP15_1923
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Phosphomycin 1 mg/ml remove 2,037,192 + HP15_1921 0.35 +1.3 2,037,249 - HP15_1921 0.39 +0.4 2,037,487 + HP15_1921 0.57 -0.3 2,037,495 - HP15_1921 0.57 +0.0 2,037,495 - HP15_1921 0.57 +0.5 2,037,495 - HP15_1921 0.57 -0.1 2,037,495 - HP15_1921 0.57 -0.1 2,037,495 - HP15_1921 0.57 -0.0 2,037,495 - HP15_1921 0.57 +0.0 2,037,520 + HP15_1921 0.59 +0.2 2,037,548 + HP15_1921 0.61 -0.4 2,037,548 + HP15_1921 0.61 -0.8 2,037,556 - HP15_1921 0.62 +0.3 2,037,566 - HP15_1921 0.63 -0.2 2,037,579 + HP15_1921 0.64 -0.2 2,037,579 + HP15_1921 0.64 -0.0 2,037,587 - HP15_1921 0.64 -0.2 2,037,606 + HP15_1921 0.66 +0.4 2,037,670 + HP15_1921 0.70 +0.3 2,037,780 + HP15_1921 0.78 -0.3 2,037,814 + HP15_1921 0.81 +1.3 2,037,962 + +0.6 2,037,962 - +0.1 2,038,017 + -0.2 2,038,113 - -0.0 2,038,204 + HP15_1922 0.15 +0.8 2,038,224 - HP15_1922 0.18 +0.0 2,038,355 - HP15_1922 0.32 +0.5 2,038,585 + HP15_1922 0.59 +0.7 2,038,587 + HP15_1922 0.59 +0.0 2,038,735 + HP15_1922 0.76 +1.4 2,038,853 - HP15_1922 0.89 +0.6 2,038,853 - HP15_1922 0.89 +1.9 2,038,919 - +0.2 2,038,923 + -0.5 2,039,002 - -0.0 2,039,102 + HP15_1923 0.10 +0.2 2,039,113 + HP15_1923 0.11 +0.6 2,039,167 - HP15_1923 0.14 +0.5 2,039,237 - HP15_1923 0.19 +0.2 2,039,276 + HP15_1923 0.21 +0.4 2,039,294 + HP15_1923 0.23 +0.1 2,039,382 - HP15_1923 0.28 +0.2 2,039,412 - HP15_1923 0.30 +1.6 2,039,511 + HP15_1923 0.36 +0.1 2,039,511 + HP15_1923 0.36 +0.8 2,039,707 + HP15_1923 0.49 +0.2 2,039,779 + HP15_1923 0.53 -0.2 2,039,787 + HP15_1923 0.54 +0.5 2,039,787 - HP15_1923 0.54 +0.3
Or see this region's nucleotide sequence