Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2276

Experiment: Defined MoLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2275 and DvMF_2276 are separated by 388 nucleotidesDvMF_2276 and DvMF_2277 are separated by 4 nucleotides DvMF_2275: DvMF_2275 - metal dependent phosphohydrolase (RefSeq), at 2,861,444 to 2,862,181 _2275 DvMF_2276: DvMF_2276 - hydrogenase formation HypD protein (RefSeq), at 2,862,570 to 2,863,667 _2276 DvMF_2277: DvMF_2277 - hydrogenase expression/formation protein HypE (RefSeq), at 2,863,672 to 2,864,697 _2277 Position (kb) 2862 2863 2864Strain fitness (log2 ratio) -1 0 1at 2861.731 kb on + strand, within DvMF_2275at 2861.813 kb on + strand, within DvMF_2275at 2861.820 kb on + strand, within DvMF_2275at 2861.833 kb on - strand, within DvMF_2275at 2861.863 kb on - strand, within DvMF_2275at 2861.888 kb on + strand, within DvMF_2275at 2861.896 kb on - strand, within DvMF_2275at 2861.926 kb on - strand, within DvMF_2275at 2861.941 kb on - strand, within DvMF_2275at 2861.959 kb on + strand, within DvMF_2275at 2862.047 kb on - strand, within DvMF_2275at 2862.047 kb on - strand, within DvMF_2275at 2862.062 kb on - strand, within DvMF_2275at 2862.159 kb on + strandat 2862.197 kb on - strandat 2862.319 kb on - strandat 2862.462 kb on + strandat 2862.888 kb on - strand, within DvMF_2276at 2863.268 kb on + strand, within DvMF_2276at 2863.374 kb on + strand, within DvMF_2276at 2864.224 kb on + strand, within DvMF_2277

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
remove
2,861,731 + DvMF_2275 0.39 -0.2
2,861,813 + DvMF_2275 0.50 -0.5
2,861,820 + DvMF_2275 0.51 -0.3
2,861,833 - DvMF_2275 0.53 -0.5
2,861,863 - DvMF_2275 0.57 -0.3
2,861,888 + DvMF_2275 0.60 +0.9
2,861,896 - DvMF_2275 0.61 +0.2
2,861,926 - DvMF_2275 0.65 -0.1
2,861,941 - DvMF_2275 0.67 -0.7
2,861,959 + DvMF_2275 0.70 -0.6
2,862,047 - DvMF_2275 0.82 -0.4
2,862,047 - DvMF_2275 0.82 -0.4
2,862,062 - DvMF_2275 0.84 +0.2
2,862,159 + -0.7
2,862,197 - -0.6
2,862,319 - -0.4
2,862,462 + -0.4
2,862,888 - DvMF_2276 0.29 -0.2
2,863,268 + DvMF_2276 0.64 -0.9
2,863,374 + DvMF_2276 0.73 +0.4
2,864,224 + DvMF_2277 0.54 -0.2

Or see this region's nucleotide sequence