Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1544 and DvMF_1545 are separated by 180 nucleotides DvMF_1545 and DvMF_1546 are separated by 5 nucleotides DvMF_1546 and DvMF_1547 are separated by 153 nucleotides
DvMF_1544: DvMF_1544 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 1,905,797 to 1,908,016
_1544
DvMF_1545: DvMF_1545 - hypothetical protein (RefSeq), at 1,908,197 to 1,908,547
_1545
DvMF_1546: DvMF_1546 - hypothetical protein (RefSeq), at 1,908,553 to 1,909,158
_1546
DvMF_1547: DvMF_1547 - glycosyl transferase family 9 (RefSeq), at 1,909,312 to 1,911,069
_1547
Position (kb)
1908
1909
1910 Strain fitness (log2 ratio)
-1
0
1 at 1907.605 kb on + strand, within DvMF_1544 at 1907.639 kb on + strand, within DvMF_1544 at 1907.652 kb on - strand, within DvMF_1544 at 1907.838 kb on - strand at 1908.202 kb on - strand at 1908.202 kb on - strand at 1908.217 kb on + strand at 1908.225 kb on - strand at 1908.588 kb on + strand at 1909.282 kb on - strand at 1909.430 kb on - strand at 1909.610 kb on + strand, within DvMF_1547 at 1909.610 kb on + strand, within DvMF_1547 at 1909.610 kb on + strand, within DvMF_1547 at 1909.959 kb on - strand, within DvMF_1547 at 1910.033 kb on + strand, within DvMF_1547 at 1910.092 kb on + strand, within DvMF_1547 at 1910.131 kb on + strand, within DvMF_1547
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 1,907,605 + DvMF_1544 0.81 +0.3 1,907,639 + DvMF_1544 0.83 -0.5 1,907,652 - DvMF_1544 0.84 +0.4 1,907,838 - +0.7 1,908,202 - -0.4 1,908,202 - -0.8 1,908,217 + -0.8 1,908,225 - -0.5 1,908,588 + -0.1 1,909,282 - -0.8 1,909,430 - +0.2 1,909,610 + DvMF_1547 0.17 +0.0 1,909,610 + DvMF_1547 0.17 +0.1 1,909,610 + DvMF_1547 0.17 +0.3 1,909,959 - DvMF_1547 0.37 +0.0 1,910,033 + DvMF_1547 0.41 +1.2 1,910,092 + DvMF_1547 0.44 +0.0 1,910,131 + DvMF_1547 0.47 +0.8
Or see this region's nucleotide sequence