Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0909

Experiment: Defined MoLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0908 and DvMF_0909 are separated by 76 nucleotidesDvMF_0909 and DvMF_0910 are separated by 290 nucleotides DvMF_0908: DvMF_0908 - histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data), at 1,092,507 to 1,093,670 _0908 DvMF_0909: DvMF_0909 - cytidylate kinase (RefSeq), at 1,093,747 to 1,094,406 _0909 DvMF_0910: DvMF_0910 - uracil-xanthine permease (RefSeq), at 1,094,697 to 1,095,983 _0910 Position (kb) 1093 1094 1095Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 1092.871 kb on - strand, within DvMF_0908at 1092.874 kb on + strand, within DvMF_0908at 1092.884 kb on + strand, within DvMF_0908at 1093.008 kb on - strand, within DvMF_0908at 1093.037 kb on - strand, within DvMF_0908at 1093.190 kb on - strand, within DvMF_0908at 1093.387 kb on + strand, within DvMF_0908at 1093.427 kb on + strand, within DvMF_0908at 1093.497 kb on + strand, within DvMF_0908at 1093.573 kb on + strandat 1093.696 kb on + strandat 1093.928 kb on + strand, within DvMF_0909at 1094.251 kb on + strand, within DvMF_0909at 1094.272 kb on + strand, within DvMF_0909at 1094.784 kb on + strandat 1094.791 kb on + strandat 1095.247 kb on - strand, within DvMF_0910at 1095.311 kb on + strand, within DvMF_0910at 1095.387 kb on + strand, within DvMF_0910at 1095.395 kb on - strand, within DvMF_0910

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
remove
1,092,871 - DvMF_0908 0.31 -5.3
1,092,874 + DvMF_0908 0.32 -5.1
1,092,884 + DvMF_0908 0.32 -7.5
1,093,008 - DvMF_0908 0.43 -6.2
1,093,037 - DvMF_0908 0.46 -4.9
1,093,190 - DvMF_0908 0.59 -7.7
1,093,387 + DvMF_0908 0.76 -7.4
1,093,427 + DvMF_0908 0.79 -8.1
1,093,497 + DvMF_0908 0.85 -3.8
1,093,573 + -7.3
1,093,696 + -0.1
1,093,928 + DvMF_0909 0.27 -0.1
1,094,251 + DvMF_0909 0.76 -0.1
1,094,272 + DvMF_0909 0.80 +0.0
1,094,784 + -0.3
1,094,791 + -0.1
1,095,247 - DvMF_0910 0.43 -0.3
1,095,311 + DvMF_0910 0.48 -0.4
1,095,387 + DvMF_0910 0.54 -0.3
1,095,395 - DvMF_0910 0.54 -0.3

Or see this region's nucleotide sequence