Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2753

Experiment: MoYLS4 with Mercury 10uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2751 and DVU2752 are separated by 10 nucleotidesDVU2752 and DVU2753 are separated by 109 nucleotidesDVU2753 and qor are separated by 265 nucleotides DVU2751: DVU2751 - hypothetical protein (TIGR), at 2,860,015 to 2,860,575 DVU2751 DVU2752: DVU2752 - rhodanese-like domain protein (TIGR), at 2,860,586 to 2,861,107 DVU2752 DVU2753: DVU2753 - C_GCAxxG_C_C family protein (TIGR), at 2,861,217 to 2,862,044 DVU2753 DVU2754: qor - quinone oxidoreductase (TIGR), at 2,862,310 to 2,863,287 qor Position (kb) 2861 2862 2863Strain fitness (log2 ratio) -2 -1 0 1at 2860.258 kb on + strand, within DVU2751at 2860.258 kb on + strand, within DVU2751at 2860.315 kb on - strand, within DVU2751at 2860.354 kb on + strand, within DVU2751at 2860.363 kb on + strand, within DVU2751at 2860.368 kb on + strand, within DVU2751at 2860.371 kb on - strand, within DVU2751at 2860.378 kb on + strand, within DVU2751at 2860.407 kb on + strand, within DVU2751at 2860.552 kb on + strandat 2860.569 kb on + strandat 2860.577 kb on - strandat 2860.633 kb on + strandat 2860.704 kb on - strand, within DVU2752at 2860.782 kb on - strand, within DVU2752at 2860.805 kb on - strand, within DVU2752at 2860.845 kb on - strand, within DVU2752at 2860.900 kb on - strand, within DVU2752at 2860.928 kb on - strand, within DVU2752at 2860.948 kb on + strand, within DVU2752at 2861.031 kb on + strand, within DVU2752at 2861.109 kb on - strandat 2861.110 kb on - strandat 2861.262 kb on + strandat 2861.289 kb on - strandat 2861.308 kb on + strand, within DVU2753at 2861.318 kb on + strand, within DVU2753at 2861.318 kb on + strand, within DVU2753at 2861.462 kb on + strand, within DVU2753at 2861.571 kb on + strand, within DVU2753at 2861.582 kb on - strand, within DVU2753at 2861.619 kb on - strand, within DVU2753at 2861.662 kb on + strand, within DVU2753at 2861.711 kb on + strand, within DVU2753at 2861.711 kb on + strand, within DVU2753at 2861.719 kb on - strand, within DVU2753at 2861.728 kb on + strand, within DVU2753at 2861.752 kb on - strand, within DVU2753at 2862.001 kb on - strandat 2862.061 kb on - strandat 2862.083 kb on - strandat 2862.149 kb on + strandat 2862.157 kb on - strandat 2862.159 kb on + strandat 2862.192 kb on + strandat 2862.411 kb on + strand, within qorat 2862.456 kb on + strand, within qorat 2862.486 kb on + strand, within qorat 2862.487 kb on - strand, within qorat 2862.491 kb on + strand, within qorat 2862.499 kb on - strand, within qorat 2862.499 kb on - strand, within qorat 2862.583 kb on - strand, within qorat 2862.662 kb on - strand, within qorat 2862.858 kb on + strand, within qorat 2862.860 kb on + strand, within qorat 2862.868 kb on - strand, within qorat 2862.873 kb on + strand, within qorat 2862.908 kb on + strand, within qorat 2862.916 kb on - strand, within qorat 2862.916 kb on - strand, within qorat 2862.916 kb on - strand, within qor

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Mercury 10uM
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2,860,258 + DVU2751 0.43 -1.1
2,860,258 + DVU2751 0.43 -0.3
2,860,315 - DVU2751 0.53 +0.4
2,860,354 + DVU2751 0.60 +0.1
2,860,363 + DVU2751 0.62 +0.2
2,860,368 + DVU2751 0.63 -0.1
2,860,371 - DVU2751 0.63 -1.4
2,860,378 + DVU2751 0.65 -0.2
2,860,407 + DVU2751 0.70 -0.9
2,860,552 + -0.7
2,860,569 + -2.4
2,860,577 - -1.0
2,860,633 + +0.4
2,860,704 - DVU2752 0.23 +0.2
2,860,782 - DVU2752 0.38 -0.0
2,860,805 - DVU2752 0.42 +0.5
2,860,845 - DVU2752 0.50 -0.2
2,860,900 - DVU2752 0.60 +0.7
2,860,928 - DVU2752 0.66 -0.7
2,860,948 + DVU2752 0.69 -0.1
2,861,031 + DVU2752 0.85 +0.3
2,861,109 - +0.3
2,861,110 - +0.1
2,861,262 + -0.2
2,861,289 - -0.7
2,861,308 + DVU2753 0.11 -0.7
2,861,318 + DVU2753 0.12 -1.1
2,861,318 + DVU2753 0.12 -0.2
2,861,462 + DVU2753 0.30 -0.9
2,861,571 + DVU2753 0.43 -0.6
2,861,582 - DVU2753 0.44 -0.6
2,861,619 - DVU2753 0.49 -0.4
2,861,662 + DVU2753 0.54 -0.4
2,861,711 + DVU2753 0.60 -0.5
2,861,711 + DVU2753 0.60 -0.6
2,861,719 - DVU2753 0.61 -1.4
2,861,728 + DVU2753 0.62 -0.6
2,861,752 - DVU2753 0.65 -0.3
2,862,001 - -0.3
2,862,061 - -0.4
2,862,083 - +0.8
2,862,149 + +0.0
2,862,157 - -0.3
2,862,159 + -0.0
2,862,192 + +0.0
2,862,411 + qor DVU2754 0.10 -1.4
2,862,456 + qor DVU2754 0.15 -0.1
2,862,486 + qor DVU2754 0.18 -0.9
2,862,487 - qor DVU2754 0.18 -0.8
2,862,491 + qor DVU2754 0.19 -0.4
2,862,499 - qor DVU2754 0.19 +0.1
2,862,499 - qor DVU2754 0.19 +0.2
2,862,583 - qor DVU2754 0.28 -0.9
2,862,662 - qor DVU2754 0.36 -1.1
2,862,858 + qor DVU2754 0.56 -0.0
2,862,860 + qor DVU2754 0.56 -0.1
2,862,868 - qor DVU2754 0.57 +0.1
2,862,873 + qor DVU2754 0.58 +0.5
2,862,908 + qor DVU2754 0.61 -0.1
2,862,916 - qor DVU2754 0.62 +0.3
2,862,916 - qor DVU2754 0.62 -0.2
2,862,916 - qor DVU2754 0.62 -0.5

Or see this region's nucleotide sequence