Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.964.1 and Xcc-8004.965.1 are separated by 90 nucleotides Xcc-8004.965.1 and Xcc-8004.966.1 are separated by 40 nucleotides
Xcc-8004.964.1: Xcc-8004.964.1 - Choline dehydrogenase (EC 1.1.99.1), at 914,024 to 915,694
Xcc-8004.964.1
Xcc-8004.965.1: Xcc-8004.965.1 - Betaine aldehyde dehydrogenase (EC 1.2.1.8), at 915,785 to 917,257
Xcc-8004.965.1
Xcc-8004.966.1: Xcc-8004.966.1 - High-affinity choline uptake protein BetT, at 917,298 to 919,277
Xcc-8004.966.1
Position (kb) 915
916
917
918 Strain fitness (log2 ratio) -2
-1
0
1 at 914.927 kb on + strand, within Xcc-8004.964.1 at 914.928 kb on - strand, within Xcc-8004.964.1 at 914.979 kb on + strand, within Xcc-8004.964.1 at 915.277 kb on - strand, within Xcc-8004.964.1 at 915.318 kb on + strand, within Xcc-8004.964.1 at 915.402 kb on + strand, within Xcc-8004.964.1 at 915.403 kb on - strand, within Xcc-8004.964.1 at 915.403 kb on - strand, within Xcc-8004.964.1 at 915.403 kb on - strand, within Xcc-8004.964.1 at 915.403 kb on - strand, within Xcc-8004.964.1 at 915.403 kb on - strand, within Xcc-8004.964.1 at 915.403 kb on - strand, within Xcc-8004.964.1 at 915.498 kb on + strand, within Xcc-8004.964.1 at 915.641 kb on + strand at 915.641 kb on + strand at 915.641 kb on + strand at 915.642 kb on - strand at 915.675 kb on + strand at 915.676 kb on - strand at 915.676 kb on - strand at 915.681 kb on + strand at 915.764 kb on + strand at 915.764 kb on + strand at 915.801 kb on + strand at 915.841 kb on - strand at 916.155 kb on + strand, within Xcc-8004.965.1 at 916.155 kb on + strand, within Xcc-8004.965.1 at 916.155 kb on + strand, within Xcc-8004.965.1 at 916.156 kb on - strand, within Xcc-8004.965.1 at 916.420 kb on - strand, within Xcc-8004.965.1 at 916.797 kb on + strand, within Xcc-8004.965.1 at 916.848 kb on + strand, within Xcc-8004.965.1 at 916.911 kb on + strand, within Xcc-8004.965.1 at 916.912 kb on - strand, within Xcc-8004.965.1 at 916.912 kb on - strand, within Xcc-8004.965.1 at 916.915 kb on - strand, within Xcc-8004.965.1 at 917.214 kb on + strand at 917.214 kb on + strand at 917.214 kb on + strand at 917.229 kb on + strand at 917.230 kb on - strand at 917.336 kb on - strand at 917.390 kb on - strand at 917.413 kb on + strand at 917.413 kb on + strand at 917.414 kb on - strand at 917.414 kb on - strand at 917.429 kb on - strand at 917.429 kb on - strand at 917.641 kb on + strand, within Xcc-8004.966.1 at 917.641 kb on + strand, within Xcc-8004.966.1 at 918.083 kb on - strand, within Xcc-8004.966.1 at 918.083 kb on - strand, within Xcc-8004.966.1 at 918.255 kb on - strand, within Xcc-8004.966.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 914,927 + Xcc-8004.964.1 0.54 +0.9 914,928 - Xcc-8004.964.1 0.54 -0.2 914,979 + Xcc-8004.964.1 0.57 -1.0 915,277 - Xcc-8004.964.1 0.75 +0.4 915,318 + Xcc-8004.964.1 0.77 -0.2 915,402 + Xcc-8004.964.1 0.82 -0.2 915,403 - Xcc-8004.964.1 0.83 +0.4 915,403 - Xcc-8004.964.1 0.83 -0.1 915,403 - Xcc-8004.964.1 0.83 -0.1 915,403 - Xcc-8004.964.1 0.83 -0.9 915,403 - Xcc-8004.964.1 0.83 -0.8 915,403 - Xcc-8004.964.1 0.83 -1.4 915,498 + Xcc-8004.964.1 0.88 +0.2 915,641 + -0.8 915,641 + -0.6 915,641 + -0.0 915,642 - -0.8 915,675 + -1.8 915,676 - +0.1 915,676 - +0.8 915,681 + +0.9 915,764 + +0.0 915,764 + +0.3 915,801 + +0.0 915,841 - -0.9 916,155 + Xcc-8004.965.1 0.25 -1.3 916,155 + Xcc-8004.965.1 0.25 -0.7 916,155 + Xcc-8004.965.1 0.25 +0.8 916,156 - Xcc-8004.965.1 0.25 -1.1 916,420 - Xcc-8004.965.1 0.43 -0.2 916,797 + Xcc-8004.965.1 0.69 -0.4 916,848 + Xcc-8004.965.1 0.72 -1.1 916,911 + Xcc-8004.965.1 0.76 -0.5 916,912 - Xcc-8004.965.1 0.77 -0.8 916,912 - Xcc-8004.965.1 0.77 -0.2 916,915 - Xcc-8004.965.1 0.77 +1.5 917,214 + -0.4 917,214 + +0.6 917,214 + -1.6 917,229 + +0.5 917,230 - -1.3 917,336 - +0.2 917,390 - -0.1 917,413 + +0.5 917,413 + +0.1 917,414 - -1.3 917,414 - -0.8 917,429 - -0.8 917,429 - -0.3 917,641 + Xcc-8004.966.1 0.17 +1.1 917,641 + Xcc-8004.966.1 0.17 -0.4 918,083 - Xcc-8004.966.1 0.40 -0.8 918,083 - Xcc-8004.966.1 0.40 +0.5 918,255 - Xcc-8004.966.1 0.48 +1.5
Or see this region's nucleotide sequence