Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.831.1 and Xcc-8004.833.1 are separated by 335 nucleotides Xcc-8004.833.1 and Xcc-8004.834.1 are separated by 281 nucleotides
Xcc-8004.831.1: Xcc-8004.831.1 - Porphobilinogen deaminase (EC 2.5.1.61), at 782,713 to 783,627
Xcc-8004.831.1
Xcc-8004.833.1: Xcc-8004.833.1 - Putative salt-induced outer membrane protein, at 783,963 to 784,763
Xcc-8004.833.1
Xcc-8004.834.1: Xcc-8004.834.1 - FIG01211032: hypothetical protein, at 785,045 to 785,944
Xcc-8004.834.1
Position (kb) 783
784
785 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 783.625 kb on + strand at 783.625 kb on + strand at 783.626 kb on - strand at 783.626 kb on - strand at 783.626 kb on - strand at 783.626 kb on - strand at 783.643 kb on + strand at 783.643 kb on + strand at 783.676 kb on + strand at 783.729 kb on + strand at 783.729 kb on + strand at 783.729 kb on + strand at 783.730 kb on - strand at 783.730 kb on - strand at 783.730 kb on - strand at 783.730 kb on - strand at 783.784 kb on + strand at 783.785 kb on - strand at 783.785 kb on - strand at 783.866 kb on + strand at 783.866 kb on + strand at 783.866 kb on + strand at 783.867 kb on - strand at 783.867 kb on - strand at 783.919 kb on + strand at 783.947 kb on + strand at 783.948 kb on - strand at 783.948 kb on - strand at 783.948 kb on - strand at 783.964 kb on + strand at 783.964 kb on + strand at 783.964 kb on + strand at 783.964 kb on + strand at 783.964 kb on + strand at 783.965 kb on - strand at 783.965 kb on - strand at 783.965 kb on - strand at 783.965 kb on - strand at 783.965 kb on - strand at 783.965 kb on - strand at 783.976 kb on + strand at 783.976 kb on + strand at 783.976 kb on + strand at 783.977 kb on - strand at 783.977 kb on - strand at 783.977 kb on - strand at 784.114 kb on + strand, within Xcc-8004.833.1 at 784.114 kb on + strand, within Xcc-8004.833.1 at 784.114 kb on + strand, within Xcc-8004.833.1 at 784.114 kb on + strand, within Xcc-8004.833.1 at 784.115 kb on - strand, within Xcc-8004.833.1 at 784.123 kb on + strand, within Xcc-8004.833.1 at 784.123 kb on + strand, within Xcc-8004.833.1 at 784.123 kb on + strand, within Xcc-8004.833.1 at 784.123 kb on + strand, within Xcc-8004.833.1 at 784.124 kb on - strand, within Xcc-8004.833.1 at 784.124 kb on - strand, within Xcc-8004.833.1 at 784.124 kb on - strand, within Xcc-8004.833.1 at 784.180 kb on + strand, within Xcc-8004.833.1 at 784.180 kb on + strand, within Xcc-8004.833.1 at 784.180 kb on + strand, within Xcc-8004.833.1 at 784.180 kb on + strand, within Xcc-8004.833.1 at 784.181 kb on - strand, within Xcc-8004.833.1 at 784.181 kb on - strand, within Xcc-8004.833.1 at 784.181 kb on - strand, within Xcc-8004.833.1 at 784.181 kb on - strand, within Xcc-8004.833.1 at 784.181 kb on - strand, within Xcc-8004.833.1 at 784.181 kb on - strand, within Xcc-8004.833.1 at 784.181 kb on - strand, within Xcc-8004.833.1 at 784.181 kb on - strand, within Xcc-8004.833.1 at 784.181 kb on - strand, within Xcc-8004.833.1 at 784.181 kb on - strand, within Xcc-8004.833.1 at 784.315 kb on + strand, within Xcc-8004.833.1 at 784.345 kb on + strand, within Xcc-8004.833.1 at 784.345 kb on + strand, within Xcc-8004.833.1 at 784.345 kb on + strand, within Xcc-8004.833.1 at 784.345 kb on + strand, within Xcc-8004.833.1 at 784.345 kb on + strand, within Xcc-8004.833.1 at 784.345 kb on + strand, within Xcc-8004.833.1 at 784.345 kb on + strand, within Xcc-8004.833.1 at 784.345 kb on + strand, within Xcc-8004.833.1 at 784.345 kb on + strand, within Xcc-8004.833.1 at 784.345 kb on + strand, within Xcc-8004.833.1 at 784.345 kb on + strand, within Xcc-8004.833.1 at 784.346 kb on - strand, within Xcc-8004.833.1 at 784.346 kb on - strand, within Xcc-8004.833.1 at 784.346 kb on - strand, within Xcc-8004.833.1 at 784.436 kb on - strand, within Xcc-8004.833.1 at 784.488 kb on - strand, within Xcc-8004.833.1 at 784.555 kb on + strand, within Xcc-8004.833.1 at 784.555 kb on + strand, within Xcc-8004.833.1 at 784.555 kb on + strand, within Xcc-8004.833.1 at 784.555 kb on + strand, within Xcc-8004.833.1 at 784.555 kb on + strand, within Xcc-8004.833.1 at 784.555 kb on + strand, within Xcc-8004.833.1 at 784.556 kb on - strand, within Xcc-8004.833.1 at 784.556 kb on - strand, within Xcc-8004.833.1 at 784.820 kb on - strand at 784.969 kb on + strand at 784.969 kb on + strand at 784.969 kb on + strand at 784.969 kb on + strand at 784.969 kb on + strand at 784.969 kb on + strand at 784.970 kb on - strand at 784.970 kb on - strand at 784.996 kb on + strand at 784.996 kb on + strand at 784.996 kb on + strand at 784.996 kb on + strand at 784.996 kb on + strand at 784.996 kb on + strand at 784.996 kb on + strand at 784.996 kb on + strand at 784.997 kb on - strand at 785.162 kb on + strand, within Xcc-8004.834.1 at 785.162 kb on + strand, within Xcc-8004.834.1 at 785.163 kb on - strand, within Xcc-8004.834.1 at 785.163 kb on - strand, within Xcc-8004.834.1 at 785.163 kb on - strand, within Xcc-8004.834.1 at 785.163 kb on - strand, within Xcc-8004.834.1 at 785.516 kb on - strand, within Xcc-8004.834.1 at 785.516 kb on - strand, within Xcc-8004.834.1 at 785.537 kb on + strand, within Xcc-8004.834.1 at 785.537 kb on + strand, within Xcc-8004.834.1 at 785.537 kb on + strand, within Xcc-8004.834.1 at 785.593 kb on + strand, within Xcc-8004.834.1 at 785.593 kb on + strand, within Xcc-8004.834.1 at 785.672 kb on + strand, within Xcc-8004.834.1 at 785.672 kb on + strand, within Xcc-8004.834.1 at 785.673 kb on - strand, within Xcc-8004.834.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 783,625 + +1.1 783,625 + +0.9 783,626 - -0.9 783,626 - -2.3 783,626 - +0.5 783,626 - +0.8 783,643 + -0.2 783,643 + -0.8 783,676 + -2.3 783,729 + -0.4 783,729 + +1.3 783,729 + +0.7 783,730 - -1.1 783,730 - -0.1 783,730 - -0.3 783,730 - +0.5 783,784 + -0.7 783,785 - -0.4 783,785 - +0.9 783,866 + -1.9 783,866 + -1.7 783,866 + +0.2 783,867 - -0.9 783,867 - +1.0 783,919 + +0.7 783,947 + -0.6 783,948 - -1.3 783,948 - -0.4 783,948 - -0.0 783,964 + -0.7 783,964 + +0.4 783,964 + -1.9 783,964 + +0.3 783,964 + +1.3 783,965 - -0.9 783,965 - -1.1 783,965 - -1.4 783,965 - +0.3 783,965 - +3.2 783,965 - +0.5 783,976 + +0.7 783,976 + +0.0 783,976 + +0.5 783,977 - -1.4 783,977 - -0.4 783,977 - -0.6 784,114 + Xcc-8004.833.1 0.19 -1.9 784,114 + Xcc-8004.833.1 0.19 +0.1 784,114 + Xcc-8004.833.1 0.19 -2.3 784,114 + Xcc-8004.833.1 0.19 -0.1 784,115 - Xcc-8004.833.1 0.19 +0.7 784,123 + Xcc-8004.833.1 0.20 -0.1 784,123 + Xcc-8004.833.1 0.20 -0.1 784,123 + Xcc-8004.833.1 0.20 -1.6 784,123 + Xcc-8004.833.1 0.20 -2.2 784,124 - Xcc-8004.833.1 0.20 -1.7 784,124 - Xcc-8004.833.1 0.20 -1.9 784,124 - Xcc-8004.833.1 0.20 +0.2 784,180 + Xcc-8004.833.1 0.27 -0.3 784,180 + Xcc-8004.833.1 0.27 -0.9 784,180 + Xcc-8004.833.1 0.27 -0.2 784,180 + Xcc-8004.833.1 0.27 +1.6 784,181 - Xcc-8004.833.1 0.27 -1.1 784,181 - Xcc-8004.833.1 0.27 -1.1 784,181 - Xcc-8004.833.1 0.27 -0.9 784,181 - Xcc-8004.833.1 0.27 +1.0 784,181 - Xcc-8004.833.1 0.27 -0.8 784,181 - Xcc-8004.833.1 0.27 +0.2 784,181 - Xcc-8004.833.1 0.27 -0.3 784,181 - Xcc-8004.833.1 0.27 -0.7 784,181 - Xcc-8004.833.1 0.27 +1.0 784,181 - Xcc-8004.833.1 0.27 -1.6 784,315 + Xcc-8004.833.1 0.44 -1.8 784,345 + Xcc-8004.833.1 0.48 -1.6 784,345 + Xcc-8004.833.1 0.48 -2.7 784,345 + Xcc-8004.833.1 0.48 -0.2 784,345 + Xcc-8004.833.1 0.48 +0.1 784,345 + Xcc-8004.833.1 0.48 -1.9 784,345 + Xcc-8004.833.1 0.48 +1.1 784,345 + Xcc-8004.833.1 0.48 +0.3 784,345 + Xcc-8004.833.1 0.48 +3.5 784,345 + Xcc-8004.833.1 0.48 -1.2 784,345 + Xcc-8004.833.1 0.48 -0.0 784,345 + Xcc-8004.833.1 0.48 -1.4 784,346 - Xcc-8004.833.1 0.48 -1.6 784,346 - Xcc-8004.833.1 0.48 -0.1 784,346 - Xcc-8004.833.1 0.48 +1.1 784,436 - Xcc-8004.833.1 0.59 -1.2 784,488 - Xcc-8004.833.1 0.66 -0.2 784,555 + Xcc-8004.833.1 0.74 -0.7 784,555 + Xcc-8004.833.1 0.74 +0.5 784,555 + Xcc-8004.833.1 0.74 -0.9 784,555 + Xcc-8004.833.1 0.74 -0.4 784,555 + Xcc-8004.833.1 0.74 -0.3 784,555 + Xcc-8004.833.1 0.74 +0.3 784,556 - Xcc-8004.833.1 0.74 -1.5 784,556 - Xcc-8004.833.1 0.74 -0.4 784,820 - -0.5 784,969 + -0.8 784,969 + -1.2 784,969 + +0.2 784,969 + +0.1 784,969 + +0.0 784,969 + +0.1 784,970 - +0.5 784,970 - +0.4 784,996 + +0.5 784,996 + +0.4 784,996 + -1.0 784,996 + -0.0 784,996 + -0.5 784,996 + -0.3 784,996 + -0.6 784,996 + +0.5 784,997 - -0.2 785,162 + Xcc-8004.834.1 0.13 +1.1 785,162 + Xcc-8004.834.1 0.13 -2.5 785,163 - Xcc-8004.834.1 0.13 -0.3 785,163 - Xcc-8004.834.1 0.13 -0.2 785,163 - Xcc-8004.834.1 0.13 +0.1 785,163 - Xcc-8004.834.1 0.13 +0.5 785,516 - Xcc-8004.834.1 0.52 -0.5 785,516 - Xcc-8004.834.1 0.52 -0.3 785,537 + Xcc-8004.834.1 0.55 +0.3 785,537 + Xcc-8004.834.1 0.55 -0.5 785,537 + Xcc-8004.834.1 0.55 +0.8 785,593 + Xcc-8004.834.1 0.61 +0.4 785,593 + Xcc-8004.834.1 0.61 +0.6 785,672 + Xcc-8004.834.1 0.70 +0.9 785,672 + Xcc-8004.834.1 0.70 +0.9 785,673 - Xcc-8004.834.1 0.70 +0.3
Or see this region's nucleotide sequence