Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.826.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.825.1 and Xcc-8004.826.1 are separated by 317 nucleotidesXcc-8004.826.1 and Xcc-8004.827.1 are separated by 132 nucleotidesXcc-8004.827.1 and Xcc-8004.828.1 are separated by 3 nucleotides Xcc-8004.825.1: Xcc-8004.825.1 - sulfur deprivation response regulator, at 775,958 to 777,796 Xcc-8004.825.1 Xcc-8004.826.1: Xcc-8004.826.1 - Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-), at 778,114 to 780,051 Xcc-8004.826.1 Xcc-8004.827.1: Xcc-8004.827.1 - phospholipase/carboxylesterase family protein, at 780,184 to 780,852 Xcc-8004.827.1 Xcc-8004.828.1: Xcc-8004.828.1 - Autolysin sensor kinase (EC 2.7.3.-), at 780,856 to 781,911 Xcc-8004.828.1 Position (kb) 778 779 780 781Strain fitness (log2 ratio) -3 -2 -1 0 1at 777.321 kb on - strand, within Xcc-8004.825.1at 777.344 kb on + strand, within Xcc-8004.825.1at 777.344 kb on + strand, within Xcc-8004.825.1at 777.344 kb on + strand, within Xcc-8004.825.1at 777.345 kb on - strand, within Xcc-8004.825.1at 777.345 kb on - strand, within Xcc-8004.825.1at 777.345 kb on - strand, within Xcc-8004.825.1at 777.345 kb on - strand, within Xcc-8004.825.1at 777.345 kb on - strand, within Xcc-8004.825.1at 777.752 kb on + strandat 777.752 kb on + strandat 777.850 kb on + strandat 777.850 kb on + strandat 777.929 kb on - strandat 777.985 kb on + strandat 777.985 kb on + strandat 777.985 kb on + strandat 777.986 kb on - strandat 777.986 kb on - strandat 778.154 kb on + strandat 778.154 kb on + strandat 778.155 kb on - strandat 778.155 kb on - strandat 778.155 kb on - strandat 778.254 kb on - strandat 778.254 kb on - strandat 778.300 kb on + strandat 778.300 kb on + strandat 778.300 kb on + strandat 778.301 kb on - strandat 778.301 kb on - strandat 778.301 kb on - strandat 778.561 kb on + strand, within Xcc-8004.826.1at 778.562 kb on - strand, within Xcc-8004.826.1at 778.562 kb on - strand, within Xcc-8004.826.1at 778.705 kb on + strand, within Xcc-8004.826.1at 778.705 kb on + strand, within Xcc-8004.826.1at 778.705 kb on + strand, within Xcc-8004.826.1at 778.706 kb on - strand, within Xcc-8004.826.1at 778.706 kb on - strand, within Xcc-8004.826.1at 778.706 kb on - strand, within Xcc-8004.826.1at 778.706 kb on - strand, within Xcc-8004.826.1at 778.706 kb on - strand, within Xcc-8004.826.1at 778.706 kb on - strand, within Xcc-8004.826.1at 778.706 kb on - strand, within Xcc-8004.826.1at 778.706 kb on - strand, within Xcc-8004.826.1at 778.751 kb on - strand, within Xcc-8004.826.1at 778.825 kb on + strand, within Xcc-8004.826.1at 778.825 kb on + strand, within Xcc-8004.826.1at 779.050 kb on + strand, within Xcc-8004.826.1at 779.051 kb on - strand, within Xcc-8004.826.1at 779.051 kb on - strand, within Xcc-8004.826.1at 779.212 kb on + strand, within Xcc-8004.826.1at 779.212 kb on + strand, within Xcc-8004.826.1at 779.212 kb on + strand, within Xcc-8004.826.1at 779.213 kb on - strand, within Xcc-8004.826.1at 779.213 kb on - strand, within Xcc-8004.826.1at 779.227 kb on + strand, within Xcc-8004.826.1at 779.227 kb on + strand, within Xcc-8004.826.1at 779.228 kb on - strand, within Xcc-8004.826.1at 779.228 kb on - strand, within Xcc-8004.826.1at 779.228 kb on - strand, within Xcc-8004.826.1at 779.228 kb on - strand, within Xcc-8004.826.1at 779.228 kb on - strand, within Xcc-8004.826.1at 779.371 kb on + strand, within Xcc-8004.826.1at 779.371 kb on + strand, within Xcc-8004.826.1at 779.372 kb on - strand, within Xcc-8004.826.1at 779.372 kb on - strand, within Xcc-8004.826.1at 779.372 kb on - strand, within Xcc-8004.826.1at 779.480 kb on - strand, within Xcc-8004.826.1at 779.563 kb on + strand, within Xcc-8004.826.1at 779.563 kb on + strand, within Xcc-8004.826.1at 779.563 kb on + strand, within Xcc-8004.826.1at 779.564 kb on - strand, within Xcc-8004.826.1at 779.564 kb on - strand, within Xcc-8004.826.1at 779.564 kb on - strand, within Xcc-8004.826.1at 779.564 kb on - strand, within Xcc-8004.826.1at 779.565 kb on + strand, within Xcc-8004.826.1at 779.565 kb on + strand, within Xcc-8004.826.1at 779.566 kb on - strand, within Xcc-8004.826.1at 779.566 kb on - strand, within Xcc-8004.826.1at 779.680 kb on + strand, within Xcc-8004.826.1at 779.680 kb on + strand, within Xcc-8004.826.1at 779.680 kb on + strand, within Xcc-8004.826.1at 779.680 kb on + strand, within Xcc-8004.826.1at 779.680 kb on + strand, within Xcc-8004.826.1at 779.680 kb on + strand, within Xcc-8004.826.1at 779.680 kb on + strand, within Xcc-8004.826.1at 779.680 kb on + strand, within Xcc-8004.826.1at 779.681 kb on - strand, within Xcc-8004.826.1at 779.681 kb on - strand, within Xcc-8004.826.1at 779.681 kb on - strand, within Xcc-8004.826.1at 779.681 kb on - strand, within Xcc-8004.826.1at 779.681 kb on - strand, within Xcc-8004.826.1at 779.681 kb on - strand, within Xcc-8004.826.1at 779.788 kb on + strand, within Xcc-8004.826.1at 779.788 kb on + strand, within Xcc-8004.826.1at 779.788 kb on + strand, within Xcc-8004.826.1at 779.788 kb on + strand, within Xcc-8004.826.1at 779.788 kb on + strand, within Xcc-8004.826.1at 779.788 kb on + strand, within Xcc-8004.826.1at 779.788 kb on + strand, within Xcc-8004.826.1at 779.789 kb on - strand, within Xcc-8004.826.1at 779.789 kb on - strand, within Xcc-8004.826.1at 779.789 kb on - strand, within Xcc-8004.826.1at 779.789 kb on - strand, within Xcc-8004.826.1at 779.789 kb on - strand, within Xcc-8004.826.1at 779.789 kb on - strand, within Xcc-8004.826.1at 779.834 kb on - strand, within Xcc-8004.826.1at 779.834 kb on - strand, within Xcc-8004.826.1at 780.155 kb on + strandat 780.155 kb on + strandat 780.155 kb on + strandat 780.155 kb on + strandat 780.155 kb on + strandat 780.156 kb on - strandat 780.156 kb on - strandat 780.156 kb on - strandat 780.156 kb on - strandat 780.391 kb on + strand, within Xcc-8004.827.1at 780.391 kb on + strand, within Xcc-8004.827.1at 780.392 kb on - strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.607 kb on + strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.608 kb on - strand, within Xcc-8004.827.1at 780.768 kb on + strand, within Xcc-8004.827.1at 780.768 kb on + strand, within Xcc-8004.827.1at 780.768 kb on + strand, within Xcc-8004.827.1at 780.768 kb on + strand, within Xcc-8004.827.1at 780.768 kb on + strand, within Xcc-8004.827.1at 780.768 kb on + strand, within Xcc-8004.827.1at 780.768 kb on + strand, within Xcc-8004.827.1at 780.769 kb on - strand, within Xcc-8004.827.1at 780.769 kb on - strand, within Xcc-8004.827.1at 780.769 kb on - strand, within Xcc-8004.827.1at 780.769 kb on - strand, within Xcc-8004.827.1at 780.769 kb on - strand, within Xcc-8004.827.1at 780.769 kb on - strand, within Xcc-8004.827.1at 780.769 kb on - strand, within Xcc-8004.827.1at 780.769 kb on - strand, within Xcc-8004.827.1at 780.769 kb on - strand, within Xcc-8004.827.1at 780.772 kb on + strand, within Xcc-8004.827.1at 780.772 kb on + strand, within Xcc-8004.827.1at 780.773 kb on - strand, within Xcc-8004.827.1at 780.773 kb on - strand, within Xcc-8004.827.1at 780.862 kb on + strandat 780.862 kb on + strandat 780.862 kb on + strandat 780.862 kb on + strandat 780.862 kb on + strandat 780.862 kb on + strandat 780.863 kb on - strandat 780.863 kb on - strandat 780.863 kb on - strandat 780.863 kb on - strandat 780.863 kb on - strandat 780.988 kb on - strand, within Xcc-8004.828.1at 780.988 kb on - strand, within Xcc-8004.828.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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777,321 - Xcc-8004.825.1 0.74 -0.3
777,344 + Xcc-8004.825.1 0.75 -0.4
777,344 + Xcc-8004.825.1 0.75 +1.4
777,344 + Xcc-8004.825.1 0.75 +0.5
777,345 - Xcc-8004.825.1 0.75 -0.2
777,345 - Xcc-8004.825.1 0.75 -0.8
777,345 - Xcc-8004.825.1 0.75 +1.7
777,345 - Xcc-8004.825.1 0.75 -0.2
777,345 - Xcc-8004.825.1 0.75 +0.8
777,752 + -1.8
777,752 + +0.3
777,850 + -0.0
777,850 + +0.7
777,929 - -0.3
777,985 + -0.8
777,985 + +0.2
777,985 + +1.5
777,986 - -0.6
777,986 - +0.1
778,154 + -1.3
778,154 + -1.0
778,155 - -0.2
778,155 - -0.9
778,155 - -1.3
778,254 - -1.9
778,254 - -0.3
778,300 + -1.0
778,300 + -0.4
778,300 + -0.5
778,301 - -2.8
778,301 - -1.0
778,301 - +0.5
778,561 + Xcc-8004.826.1 0.23 -1.0
778,562 - Xcc-8004.826.1 0.23 -1.1
778,562 - Xcc-8004.826.1 0.23 -0.6
778,705 + Xcc-8004.826.1 0.30 -0.2
778,705 + Xcc-8004.826.1 0.30 -0.9
778,705 + Xcc-8004.826.1 0.30 -2.2
778,706 - Xcc-8004.826.1 0.31 -1.0
778,706 - Xcc-8004.826.1 0.31 -0.7
778,706 - Xcc-8004.826.1 0.31 -0.1
778,706 - Xcc-8004.826.1 0.31 -0.5
778,706 - Xcc-8004.826.1 0.31 -0.1
778,706 - Xcc-8004.826.1 0.31 +0.2
778,706 - Xcc-8004.826.1 0.31 -0.2
778,706 - Xcc-8004.826.1 0.31 +1.4
778,751 - Xcc-8004.826.1 0.33 -1.0
778,825 + Xcc-8004.826.1 0.37 -0.2
778,825 + Xcc-8004.826.1 0.37 +0.4
779,050 + Xcc-8004.826.1 0.48 -0.6
779,051 - Xcc-8004.826.1 0.48 -1.0
779,051 - Xcc-8004.826.1 0.48 -1.5
779,212 + Xcc-8004.826.1 0.57 -0.2
779,212 + Xcc-8004.826.1 0.57 +0.7
779,212 + Xcc-8004.826.1 0.57 -1.2
779,213 - Xcc-8004.826.1 0.57 -1.1
779,213 - Xcc-8004.826.1 0.57 +0.1
779,227 + Xcc-8004.826.1 0.57 -0.0
779,227 + Xcc-8004.826.1 0.57 +0.3
779,228 - Xcc-8004.826.1 0.57 -2.3
779,228 - Xcc-8004.826.1 0.57 -1.0
779,228 - Xcc-8004.826.1 0.57 -1.0
779,228 - Xcc-8004.826.1 0.57 -0.8
779,228 - Xcc-8004.826.1 0.57 -0.9
779,371 + Xcc-8004.826.1 0.65 +0.4
779,371 + Xcc-8004.826.1 0.65 -1.7
779,372 - Xcc-8004.826.1 0.65 -2.1
779,372 - Xcc-8004.826.1 0.65 -0.0
779,372 - Xcc-8004.826.1 0.65 -0.9
779,480 - Xcc-8004.826.1 0.70 -1.3
779,563 + Xcc-8004.826.1 0.75 -0.7
779,563 + Xcc-8004.826.1 0.75 +0.1
779,563 + Xcc-8004.826.1 0.75 -0.9
779,564 - Xcc-8004.826.1 0.75 +0.2
779,564 - Xcc-8004.826.1 0.75 -1.2
779,564 - Xcc-8004.826.1 0.75 -0.9
779,564 - Xcc-8004.826.1 0.75 -0.7
779,565 + Xcc-8004.826.1 0.75 -1.5
779,565 + Xcc-8004.826.1 0.75 -0.3
779,566 - Xcc-8004.826.1 0.75 -0.6
779,566 - Xcc-8004.826.1 0.75 +0.2
779,680 + Xcc-8004.826.1 0.81 -1.1
779,680 + Xcc-8004.826.1 0.81 -0.7
779,680 + Xcc-8004.826.1 0.81 -1.5
779,680 + Xcc-8004.826.1 0.81 +0.2
779,680 + Xcc-8004.826.1 0.81 -0.2
779,680 + Xcc-8004.826.1 0.81 -0.8
779,680 + Xcc-8004.826.1 0.81 -2.4
779,680 + Xcc-8004.826.1 0.81 -0.3
779,681 - Xcc-8004.826.1 0.81 -0.5
779,681 - Xcc-8004.826.1 0.81 -0.7
779,681 - Xcc-8004.826.1 0.81 -1.5
779,681 - Xcc-8004.826.1 0.81 +0.0
779,681 - Xcc-8004.826.1 0.81 -1.2
779,681 - Xcc-8004.826.1 0.81 -1.2
779,788 + Xcc-8004.826.1 0.86 -0.9
779,788 + Xcc-8004.826.1 0.86 -2.9
779,788 + Xcc-8004.826.1 0.86 -0.4
779,788 + Xcc-8004.826.1 0.86 -2.5
779,788 + Xcc-8004.826.1 0.86 +0.5
779,788 + Xcc-8004.826.1 0.86 -0.9
779,788 + Xcc-8004.826.1 0.86 -1.0
779,789 - Xcc-8004.826.1 0.86 -0.3
779,789 - Xcc-8004.826.1 0.86 -1.2
779,789 - Xcc-8004.826.1 0.86 -1.5
779,789 - Xcc-8004.826.1 0.86 -1.8
779,789 - Xcc-8004.826.1 0.86 -0.7
779,789 - Xcc-8004.826.1 0.86 -2.8
779,834 - Xcc-8004.826.1 0.89 -0.6
779,834 - Xcc-8004.826.1 0.89 -0.2
780,155 + -1.7
780,155 + -0.4
780,155 + +0.1
780,155 + +0.1
780,155 + +0.4
780,156 - -0.7
780,156 - -1.6
780,156 - +0.2
780,156 - -0.9
780,391 + Xcc-8004.827.1 0.31 -0.1
780,391 + Xcc-8004.827.1 0.31 +0.2
780,392 - Xcc-8004.827.1 0.31 +0.3
780,607 + Xcc-8004.827.1 0.63 +0.5
780,607 + Xcc-8004.827.1 0.63 -1.1
780,607 + Xcc-8004.827.1 0.63 +0.9
780,607 + Xcc-8004.827.1 0.63 -1.4
780,607 + Xcc-8004.827.1 0.63 +0.1
780,607 + Xcc-8004.827.1 0.63 +1.0
780,607 + Xcc-8004.827.1 0.63 -0.5
780,607 + Xcc-8004.827.1 0.63 -0.1
780,607 + Xcc-8004.827.1 0.63 -0.5
780,607 + Xcc-8004.827.1 0.63 -2.2
780,607 + Xcc-8004.827.1 0.63 -0.4
780,607 + Xcc-8004.827.1 0.63 +0.0
780,608 - Xcc-8004.827.1 0.63 +0.6
780,608 - Xcc-8004.827.1 0.63 +0.3
780,608 - Xcc-8004.827.1 0.63 -0.3
780,608 - Xcc-8004.827.1 0.63 +1.2
780,608 - Xcc-8004.827.1 0.63 -0.9
780,608 - Xcc-8004.827.1 0.63 +1.5
780,608 - Xcc-8004.827.1 0.63 -0.1
780,608 - Xcc-8004.827.1 0.63 -1.1
780,608 - Xcc-8004.827.1 0.63 +0.1
780,608 - Xcc-8004.827.1 0.63 -1.1
780,608 - Xcc-8004.827.1 0.63 +1.0
780,768 + Xcc-8004.827.1 0.87 -0.4
780,768 + Xcc-8004.827.1 0.87 -1.3
780,768 + Xcc-8004.827.1 0.87 -2.0
780,768 + Xcc-8004.827.1 0.87 -0.6
780,768 + Xcc-8004.827.1 0.87 +0.3
780,768 + Xcc-8004.827.1 0.87 -1.7
780,768 + Xcc-8004.827.1 0.87 -0.3
780,769 - Xcc-8004.827.1 0.87 -0.0
780,769 - Xcc-8004.827.1 0.87 +0.0
780,769 - Xcc-8004.827.1 0.87 -0.6
780,769 - Xcc-8004.827.1 0.87 +0.5
780,769 - Xcc-8004.827.1 0.87 -1.1
780,769 - Xcc-8004.827.1 0.87 +1.0
780,769 - Xcc-8004.827.1 0.87 -1.1
780,769 - Xcc-8004.827.1 0.87 +0.8
780,769 - Xcc-8004.827.1 0.87 -0.8
780,772 + Xcc-8004.827.1 0.88 +0.9
780,772 + Xcc-8004.827.1 0.88 +0.0
780,773 - Xcc-8004.827.1 0.88 +1.0
780,773 - Xcc-8004.827.1 0.88 -3.2
780,862 + -0.7
780,862 + -0.7
780,862 + -2.4
780,862 + -0.8
780,862 + -1.3
780,862 + -0.1
780,863 - +0.3
780,863 - -0.5
780,863 - +0.8
780,863 - +1.0
780,863 - -0.7
780,988 - Xcc-8004.828.1 0.12 -1.0
780,988 - Xcc-8004.828.1 0.12 +0.8

Or see this region's nucleotide sequence