Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.800.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.797.1 and Xcc-8004.798.1 are separated by 172 nucleotidesXcc-8004.798.1 and Xcc-8004.800.1 are separated by 476 nucleotidesXcc-8004.800.1 and Xcc-8004.801.1 are separated by 180 nucleotides Xcc-8004.797.1: Xcc-8004.797.1 - Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91), at 740,057 to 740,827 Xcc-8004.797.1 Xcc-8004.798.1: Xcc-8004.798.1 - putative; ORF located using Glimmer/Genemark, at 741,000 to 741,224 Xcc-8004.798.1 Xcc-8004.800.1: Xcc-8004.800.1 - Endoglucanase (EC 3.2.1.4), at 741,701 to 743,686 Xcc-8004.800.1 Xcc-8004.801.1: Xcc-8004.801.1 - 1,4-beta-cellobiosidase, at 743,867 to 745,567 Xcc-8004.801.1 Position (kb) 741 742 743 744Strain fitness (log2 ratio) -2 -1 0 1at 740.704 kb on - strand, within Xcc-8004.797.1at 741.009 kb on + strandat 741.251 kb on - strandat 741.318 kb on + strandat 741.319 kb on - strandat 741.321 kb on + strandat 741.366 kb on - strandat 741.366 kb on - strandat 741.373 kb on + strandat 741.597 kb on - strandat 741.623 kb on + strandat 741.640 kb on + strandat 741.641 kb on - strandat 741.641 kb on - strandat 741.772 kb on + strandat 741.772 kb on + strandat 741.855 kb on + strandat 741.856 kb on - strandat 742.007 kb on + strand, within Xcc-8004.800.1at 742.077 kb on - strand, within Xcc-8004.800.1at 742.123 kb on - strand, within Xcc-8004.800.1at 742.161 kb on + strand, within Xcc-8004.800.1at 742.312 kb on + strand, within Xcc-8004.800.1at 742.598 kb on + strand, within Xcc-8004.800.1at 743.240 kb on + strand, within Xcc-8004.800.1at 743.241 kb on - strand, within Xcc-8004.800.1at 743.250 kb on - strand, within Xcc-8004.800.1at 743.398 kb on + strand, within Xcc-8004.800.1at 743.399 kb on - strand, within Xcc-8004.800.1at 743.461 kb on + strand, within Xcc-8004.800.1at 743.462 kb on - strand, within Xcc-8004.800.1at 743.494 kb on + strandat 743.494 kb on + strandat 743.494 kb on + strandat 743.737 kb on + strandat 743.738 kb on - strandat 743.860 kb on + strandat 743.940 kb on + strandat 743.941 kb on - strandat 743.943 kb on + strandat 743.944 kb on - strandat 743.944 kb on - strandat 743.946 kb on + strandat 743.947 kb on - strandat 743.980 kb on - strandat 743.980 kb on - strandat 743.980 kb on - strandat 744.304 kb on + strand, within Xcc-8004.801.1at 744.305 kb on - strand, within Xcc-8004.801.1at 744.306 kb on + strand, within Xcc-8004.801.1at 744.306 kb on + strand, within Xcc-8004.801.1at 744.307 kb on - strand, within Xcc-8004.801.1at 744.307 kb on - strand, within Xcc-8004.801.1at 744.307 kb on - strand, within Xcc-8004.801.1at 744.322 kb on - strand, within Xcc-8004.801.1at 744.413 kb on - strand, within Xcc-8004.801.1at 744.413 kb on - strand, within Xcc-8004.801.1at 744.516 kb on + strand, within Xcc-8004.801.1at 744.516 kb on + strand, within Xcc-8004.801.1at 744.516 kb on + strand, within Xcc-8004.801.1at 744.517 kb on - strand, within Xcc-8004.801.1at 744.636 kb on + strand, within Xcc-8004.801.1at 744.651 kb on + strand, within Xcc-8004.801.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
remove
740,704 - Xcc-8004.797.1 0.84 -0.6
741,009 + -0.2
741,251 - -0.4
741,318 + -0.7
741,319 - +0.5
741,321 + +1.2
741,366 - +0.4
741,366 - +0.6
741,373 + -1.0
741,597 - -0.4
741,623 + +0.2
741,640 + -0.4
741,641 - -0.7
741,641 - -0.5
741,772 + +1.0
741,772 + +0.0
741,855 + -1.4
741,856 - +0.2
742,007 + Xcc-8004.800.1 0.15 +0.0
742,077 - Xcc-8004.800.1 0.19 -0.6
742,123 - Xcc-8004.800.1 0.21 -0.3
742,161 + Xcc-8004.800.1 0.23 -0.3
742,312 + Xcc-8004.800.1 0.31 -0.4
742,598 + Xcc-8004.800.1 0.45 -1.0
743,240 + Xcc-8004.800.1 0.77 -0.7
743,241 - Xcc-8004.800.1 0.78 -0.2
743,250 - Xcc-8004.800.1 0.78 -0.3
743,398 + Xcc-8004.800.1 0.85 -1.2
743,399 - Xcc-8004.800.1 0.85 -0.3
743,461 + Xcc-8004.800.1 0.89 -0.1
743,462 - Xcc-8004.800.1 0.89 -1.6
743,494 + +0.9
743,494 + -1.2
743,494 + -0.1
743,737 + +0.1
743,738 - +0.4
743,860 + +0.3
743,940 + -0.8
743,941 - -1.8
743,943 + -1.1
743,944 - -0.8
743,944 - -0.3
743,946 + +0.7
743,947 - -1.0
743,980 - +0.5
743,980 - -0.7
743,980 - +0.3
744,304 + Xcc-8004.801.1 0.26 +0.5
744,305 - Xcc-8004.801.1 0.26 -0.2
744,306 + Xcc-8004.801.1 0.26 +0.5
744,306 + Xcc-8004.801.1 0.26 -0.7
744,307 - Xcc-8004.801.1 0.26 +0.1
744,307 - Xcc-8004.801.1 0.26 -0.6
744,307 - Xcc-8004.801.1 0.26 -1.1
744,322 - Xcc-8004.801.1 0.27 +0.3
744,413 - Xcc-8004.801.1 0.32 +0.2
744,413 - Xcc-8004.801.1 0.32 +0.1
744,516 + Xcc-8004.801.1 0.38 -0.7
744,516 + Xcc-8004.801.1 0.38 -0.0
744,516 + Xcc-8004.801.1 0.38 +0.6
744,517 - Xcc-8004.801.1 0.38 -0.4
744,636 + Xcc-8004.801.1 0.45 +0.4
744,651 + Xcc-8004.801.1 0.46 +1.1

Or see this region's nucleotide sequence