Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.794.1 and Xcc-8004.795.1 are separated by 49 nucleotides Xcc-8004.795.1 and Xcc-8004.797.1 are separated by 140 nucleotides
Xcc-8004.794.1: Xcc-8004.794.1 - M. jannaschii predicted coding region MJ1233, at 737,789 to 738,991
Xcc-8004.794.1
Xcc-8004.795.1: Xcc-8004.795.1 - Membrane protein, putative, at 739,041 to 739,916
Xcc-8004.795.1
Xcc-8004.797.1: Xcc-8004.797.1 - Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91), at 740,057 to 740,827
Xcc-8004.797.1
Position (kb) 739
740 Strain fitness (log2 ratio) -2
-1
0
1
2 at 738.225 kb on + strand, within Xcc-8004.794.1 at 738.225 kb on + strand, within Xcc-8004.794.1 at 738.226 kb on - strand, within Xcc-8004.794.1 at 738.441 kb on + strand, within Xcc-8004.794.1 at 738.574 kb on + strand, within Xcc-8004.794.1 at 738.575 kb on - strand, within Xcc-8004.794.1 at 738.630 kb on + strand, within Xcc-8004.794.1 at 738.630 kb on + strand, within Xcc-8004.794.1 at 738.705 kb on + strand, within Xcc-8004.794.1 at 738.705 kb on + strand, within Xcc-8004.794.1 at 738.706 kb on - strand, within Xcc-8004.794.1 at 738.706 kb on - strand, within Xcc-8004.794.1 at 738.706 kb on - strand, within Xcc-8004.794.1 at 738.706 kb on - strand, within Xcc-8004.794.1 at 738.742 kb on + strand, within Xcc-8004.794.1 at 738.742 kb on + strand, within Xcc-8004.794.1 at 738.743 kb on - strand, within Xcc-8004.794.1 at 738.770 kb on - strand, within Xcc-8004.794.1 at 738.925 kb on + strand at 738.925 kb on + strand at 738.929 kb on - strand at 738.929 kb on - strand at 738.982 kb on - strand at 739.135 kb on - strand, within Xcc-8004.795.1 at 739.570 kb on - strand, within Xcc-8004.795.1 at 739.644 kb on + strand, within Xcc-8004.795.1 at 739.644 kb on + strand, within Xcc-8004.795.1 at 739.645 kb on - strand, within Xcc-8004.795.1 at 739.645 kb on - strand, within Xcc-8004.795.1 at 739.707 kb on + strand, within Xcc-8004.795.1 at 739.708 kb on - strand, within Xcc-8004.795.1 at 739.708 kb on - strand, within Xcc-8004.795.1 at 739.708 kb on - strand, within Xcc-8004.795.1 at 739.752 kb on + strand, within Xcc-8004.795.1 at 739.786 kb on - strand, within Xcc-8004.795.1 at 739.928 kb on + strand at 740.091 kb on + strand at 740.092 kb on - strand at 740.092 kb on - strand at 740.133 kb on + strand at 740.134 kb on - strand, within Xcc-8004.797.1 at 740.704 kb on - strand, within Xcc-8004.797.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 738,225 + Xcc-8004.794.1 0.36 +0.5 738,225 + Xcc-8004.794.1 0.36 -0.7 738,226 - Xcc-8004.794.1 0.36 -0.3 738,441 + Xcc-8004.794.1 0.54 +0.4 738,574 + Xcc-8004.794.1 0.65 +0.0 738,575 - Xcc-8004.794.1 0.65 +2.5 738,630 + Xcc-8004.794.1 0.70 -2.5 738,630 + Xcc-8004.794.1 0.70 -0.6 738,705 + Xcc-8004.794.1 0.76 +0.0 738,705 + Xcc-8004.794.1 0.76 +0.2 738,706 - Xcc-8004.794.1 0.76 -0.2 738,706 - Xcc-8004.794.1 0.76 +0.1 738,706 - Xcc-8004.794.1 0.76 -0.9 738,706 - Xcc-8004.794.1 0.76 -0.2 738,742 + Xcc-8004.794.1 0.79 -0.5 738,742 + Xcc-8004.794.1 0.79 -0.7 738,743 - Xcc-8004.794.1 0.79 -1.2 738,770 - Xcc-8004.794.1 0.82 +0.7 738,925 + -0.6 738,925 + -1.0 738,929 - +0.7 738,929 - -0.9 738,982 - -2.2 739,135 - Xcc-8004.795.1 0.11 +0.1 739,570 - Xcc-8004.795.1 0.60 -0.5 739,644 + Xcc-8004.795.1 0.69 -0.7 739,644 + Xcc-8004.795.1 0.69 -0.3 739,645 - Xcc-8004.795.1 0.69 -0.3 739,645 - Xcc-8004.795.1 0.69 +1.1 739,707 + Xcc-8004.795.1 0.76 -0.3 739,708 - Xcc-8004.795.1 0.76 +0.3 739,708 - Xcc-8004.795.1 0.76 -0.9 739,708 - Xcc-8004.795.1 0.76 -2.3 739,752 + Xcc-8004.795.1 0.81 -1.3 739,786 - Xcc-8004.795.1 0.85 -0.5 739,928 + -1.6 740,091 + -0.6 740,092 - -0.8 740,092 - -2.1 740,133 + -1.0 740,134 - Xcc-8004.797.1 0.10 +2.5 740,704 - Xcc-8004.797.1 0.84 -0.6
Or see this region's nucleotide sequence