Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.780.1 and Xcc-8004.781.1 are separated by 271 nucleotides Xcc-8004.781.1 and Xcc-8004.782.1 overlap by 4 nucleotides Xcc-8004.782.1 and Xcc-8004.783.1 are separated by 119 nucleotides
Xcc-8004.780.1: Xcc-8004.780.1 - FIG01213532: hypothetical protein, at 725,376 to 726,002
Xcc-8004.780.1
Xcc-8004.781.1: Xcc-8004.781.1 - inner membrane protein, at 726,274 to 726,636
Xcc-8004.781.1
Xcc-8004.782.1: Xcc-8004.782.1 - hypothetical protein, at 726,633 to 726,773
Xcc-8004.782.1
Xcc-8004.783.1: Xcc-8004.783.1 - Dipeptidyl peptidase IV, at 726,893 to 729,217
Xcc-8004.783.1
Position (kb) 726
727 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 726.238 kb on - strand at 726.242 kb on + strand at 726.242 kb on + strand at 726.242 kb on + strand at 726.242 kb on + strand at 726.243 kb on - strand at 726.416 kb on - strand, within Xcc-8004.781.1 at 726.416 kb on - strand, within Xcc-8004.781.1 at 726.416 kb on - strand, within Xcc-8004.781.1 at 726.416 kb on - strand, within Xcc-8004.781.1 at 726.484 kb on + strand, within Xcc-8004.781.1 at 726.484 kb on + strand, within Xcc-8004.781.1 at 726.485 kb on - strand, within Xcc-8004.781.1 at 726.485 kb on - strand, within Xcc-8004.781.1 at 726.688 kb on - strand, within Xcc-8004.782.1 at 726.714 kb on + strand, within Xcc-8004.782.1 at 726.715 kb on - strand, within Xcc-8004.782.1 at 726.715 kb on - strand, within Xcc-8004.782.1 at 726.715 kb on - strand, within Xcc-8004.782.1 at 726.771 kb on + strand at 726.937 kb on + strand at 726.937 kb on + strand at 726.951 kb on + strand at 726.952 kb on - strand at 726.952 kb on - strand at 727.089 kb on + strand at 727.090 kb on - strand at 727.179 kb on + strand, within Xcc-8004.783.1 at 727.558 kb on - strand, within Xcc-8004.783.1 at 727.599 kb on + strand, within Xcc-8004.783.1 at 727.600 kb on - strand, within Xcc-8004.783.1 at 727.605 kb on + strand, within Xcc-8004.783.1 at 727.605 kb on + strand, within Xcc-8004.783.1 at 727.605 kb on + strand, within Xcc-8004.783.1 at 727.605 kb on + strand, within Xcc-8004.783.1 at 727.606 kb on - strand, within Xcc-8004.783.1 at 727.606 kb on - strand, within Xcc-8004.783.1 at 727.606 kb on - strand, within Xcc-8004.783.1 at 727.665 kb on + strand, within Xcc-8004.783.1 at 727.666 kb on - strand, within Xcc-8004.783.1 at 727.666 kb on - strand, within Xcc-8004.783.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 726,238 - -0.6 726,242 + +0.1 726,242 + +0.3 726,242 + -0.8 726,242 + -0.0 726,243 - -0.5 726,416 - Xcc-8004.781.1 0.39 +0.6 726,416 - Xcc-8004.781.1 0.39 -0.4 726,416 - Xcc-8004.781.1 0.39 -0.5 726,416 - Xcc-8004.781.1 0.39 +0.4 726,484 + Xcc-8004.781.1 0.58 -1.2 726,484 + Xcc-8004.781.1 0.58 -0.0 726,485 - Xcc-8004.781.1 0.58 +0.4 726,485 - Xcc-8004.781.1 0.58 -2.1 726,688 - Xcc-8004.782.1 0.39 -1.3 726,714 + Xcc-8004.782.1 0.57 +0.2 726,715 - Xcc-8004.782.1 0.58 -0.7 726,715 - Xcc-8004.782.1 0.58 -1.2 726,715 - Xcc-8004.782.1 0.58 -1.1 726,771 + +0.6 726,937 + +1.1 726,937 + +3.5 726,951 + +1.0 726,952 - -1.0 726,952 - -1.6 727,089 + -0.6 727,090 - -1.0 727,179 + Xcc-8004.783.1 0.12 -0.1 727,558 - Xcc-8004.783.1 0.29 -2.9 727,599 + Xcc-8004.783.1 0.30 -0.3 727,600 - Xcc-8004.783.1 0.30 -1.1 727,605 + Xcc-8004.783.1 0.31 -0.3 727,605 + Xcc-8004.783.1 0.31 -0.0 727,605 + Xcc-8004.783.1 0.31 +0.3 727,605 + Xcc-8004.783.1 0.31 -1.9 727,606 - Xcc-8004.783.1 0.31 +0.8 727,606 - Xcc-8004.783.1 0.31 -0.2 727,606 - Xcc-8004.783.1 0.31 -0.2 727,665 + Xcc-8004.783.1 0.33 -0.4 727,666 - Xcc-8004.783.1 0.33 -0.4 727,666 - Xcc-8004.783.1 0.33 -0.6
Or see this region's nucleotide sequence