Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.621.1 and Xcc-8004.622.1 are separated by 123 nucleotides Xcc-8004.622.1 and Xcc-8004.623.1 overlap by 8 nucleotides
Xcc-8004.621.1: Xcc-8004.621.1 - Anthranilate phosphoribosyltransferase (EC 2.4.2.18), at 572,709 to 573,746
Xcc-8004.621.1
Xcc-8004.622.1: Xcc-8004.622.1 - Indole-3-glycerol phosphate synthase (EC 4.1.1.48), at 573,870 to 574,667
Xcc-8004.622.1
Xcc-8004.623.1: Xcc-8004.623.1 - Phosphoserine phosphatase, at 574,660 to 575,376
Xcc-8004.623.1
Position (kb) 573
574
575 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 573.171 kb on + strand, within Xcc-8004.621.1 at 573.171 kb on + strand, within Xcc-8004.621.1 at 573.171 kb on + strand, within Xcc-8004.621.1 at 573.172 kb on - strand, within Xcc-8004.621.1 at 573.172 kb on - strand, within Xcc-8004.621.1 at 573.448 kb on + strand, within Xcc-8004.621.1 at 573.457 kb on - strand, within Xcc-8004.621.1 at 573.615 kb on + strand, within Xcc-8004.621.1 at 573.615 kb on + strand, within Xcc-8004.621.1 at 573.616 kb on - strand, within Xcc-8004.621.1 at 573.616 kb on - strand, within Xcc-8004.621.1 at 573.616 kb on - strand, within Xcc-8004.621.1 at 573.616 kb on - strand, within Xcc-8004.621.1 at 573.708 kb on + strand at 573.709 kb on - strand at 573.709 kb on - strand at 573.878 kb on + strand at 573.963 kb on - strand, within Xcc-8004.622.1 at 574.048 kb on + strand, within Xcc-8004.622.1 at 574.048 kb on + strand, within Xcc-8004.622.1 at 574.049 kb on - strand, within Xcc-8004.622.1 at 574.161 kb on + strand, within Xcc-8004.622.1 at 574.161 kb on + strand, within Xcc-8004.622.1 at 574.161 kb on + strand, within Xcc-8004.622.1 at 574.162 kb on - strand, within Xcc-8004.622.1 at 574.162 kb on - strand, within Xcc-8004.622.1 at 574.162 kb on - strand, within Xcc-8004.622.1 at 574.186 kb on - strand, within Xcc-8004.622.1 at 574.260 kb on + strand, within Xcc-8004.622.1 at 574.261 kb on - strand, within Xcc-8004.622.1 at 574.649 kb on - strand at 574.649 kb on - strand at 574.672 kb on + strand at 574.672 kb on + strand at 574.672 kb on + strand at 574.730 kb on - strand at 574.871 kb on - strand, within Xcc-8004.623.1 at 574.933 kb on + strand, within Xcc-8004.623.1 at 574.933 kb on + strand, within Xcc-8004.623.1 at 574.934 kb on - strand, within Xcc-8004.623.1 at 575.208 kb on + strand, within Xcc-8004.623.1 at 575.216 kb on - strand, within Xcc-8004.623.1 at 575.312 kb on + strand at 575.312 kb on + strand at 575.375 kb on - strand at 575.401 kb on - strand at 575.418 kb on + strand at 575.419 kb on - strand at 575.419 kb on - strand at 575.528 kb on + strand at 575.537 kb on + strand at 575.537 kb on + strand at 575.537 kb on + strand at 575.537 kb on + strand at 575.537 kb on + strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.538 kb on - strand at 575.615 kb on + strand at 575.616 kb on - strand at 575.616 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 573,171 + Xcc-8004.621.1 0.45 -1.1 573,171 + Xcc-8004.621.1 0.45 +0.0 573,171 + Xcc-8004.621.1 0.45 +1.3 573,172 - Xcc-8004.621.1 0.45 -1.0 573,172 - Xcc-8004.621.1 0.45 +0.4 573,448 + Xcc-8004.621.1 0.71 +0.5 573,457 - Xcc-8004.621.1 0.72 +0.9 573,615 + Xcc-8004.621.1 0.87 -0.1 573,615 + Xcc-8004.621.1 0.87 +0.1 573,616 - Xcc-8004.621.1 0.87 +0.6 573,616 - Xcc-8004.621.1 0.87 +0.7 573,616 - Xcc-8004.621.1 0.87 -0.7 573,616 - Xcc-8004.621.1 0.87 -0.3 573,708 + -0.4 573,709 - -0.1 573,709 - +0.6 573,878 + -0.8 573,963 - Xcc-8004.622.1 0.12 -0.1 574,048 + Xcc-8004.622.1 0.22 -0.6 574,048 + Xcc-8004.622.1 0.22 -0.9 574,049 - Xcc-8004.622.1 0.22 -0.5 574,161 + Xcc-8004.622.1 0.36 -2.0 574,161 + Xcc-8004.622.1 0.36 -2.0 574,161 + Xcc-8004.622.1 0.36 -0.0 574,162 - Xcc-8004.622.1 0.37 -1.5 574,162 - Xcc-8004.622.1 0.37 -0.7 574,162 - Xcc-8004.622.1 0.37 -1.7 574,186 - Xcc-8004.622.1 0.40 -3.2 574,260 + Xcc-8004.622.1 0.49 -0.1 574,261 - Xcc-8004.622.1 0.49 -0.5 574,649 - -1.0 574,649 - -0.5 574,672 + -0.9 574,672 + +3.5 574,672 + -0.5 574,730 - +0.9 574,871 - Xcc-8004.623.1 0.29 -1.0 574,933 + Xcc-8004.623.1 0.38 -0.8 574,933 + Xcc-8004.623.1 0.38 +0.2 574,934 - Xcc-8004.623.1 0.38 +0.3 575,208 + Xcc-8004.623.1 0.76 -0.8 575,216 - Xcc-8004.623.1 0.78 +0.9 575,312 + +0.9 575,312 + -0.5 575,375 - +0.1 575,401 - +0.6 575,418 + -0.6 575,419 - +0.6 575,419 - -0.9 575,528 + -0.4 575,537 + +0.1 575,537 + -0.2 575,537 + -0.6 575,537 + -0.3 575,537 + +0.4 575,538 - -0.4 575,538 - +0.4 575,538 - -2.0 575,538 - -1.3 575,538 - +0.6 575,538 - +0.2 575,538 - -0.1 575,538 - +1.2 575,538 - +0.6 575,615 + +0.1 575,616 - +0.0 575,616 - -0.1
Or see this region's nucleotide sequence