Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.609.1 and Xcc-8004.610.1 are separated by 13 nucleotides Xcc-8004.610.1 and Xcc-8004.611.1 are separated by 124 nucleotides Xcc-8004.611.1 and Xcc-8004.612.1 overlap by 4 nucleotides
Xcc-8004.609.1: Xcc-8004.609.1 - hypothetical protein, at 561,540 to 562,610
Xcc-8004.609.1
Xcc-8004.610.1: Xcc-8004.610.1 - putative; ORF located using Glimmer/Genemark, at 562,624 to 562,989
Xcc-8004.610.1
Xcc-8004.611.1: Xcc-8004.611.1 - Type I restriction-modification system, restriction subunit R (EC 3.1.21.3), at 563,114 to 566,098
Xcc-8004.611.1
Xcc-8004.612.1: Xcc-8004.612.1 - Type I restriction-modification system, specificity subunit S (EC 3.1.21.3), at 566,095 to 567,387
Xcc-8004.612.1
Position (kb) 563
564
565
566
567 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 562.153 kb on - strand, within Xcc-8004.609.1 at 562.569 kb on + strand at 562.569 kb on + strand at 562.569 kb on + strand at 562.612 kb on + strand at 562.612 kb on + strand at 562.612 kb on + strand at 562.612 kb on + strand at 562.616 kb on + strand at 562.616 kb on + strand at 562.617 kb on - strand at 562.617 kb on - strand at 562.617 kb on - strand at 562.617 kb on - strand at 562.636 kb on - strand at 562.705 kb on - strand, within Xcc-8004.610.1 at 562.872 kb on + strand, within Xcc-8004.610.1 at 562.872 kb on + strand, within Xcc-8004.610.1 at 562.873 kb on - strand, within Xcc-8004.610.1 at 562.898 kb on - strand, within Xcc-8004.610.1 at 562.994 kb on + strand at 563.113 kb on + strand at 563.114 kb on - strand at 563.175 kb on - strand at 563.310 kb on + strand at 563.310 kb on + strand at 563.351 kb on - strand at 563.446 kb on + strand, within Xcc-8004.611.1 at 563.468 kb on + strand, within Xcc-8004.611.1 at 563.469 kb on - strand, within Xcc-8004.611.1 at 563.469 kb on - strand, within Xcc-8004.611.1 at 563.526 kb on + strand, within Xcc-8004.611.1 at 563.527 kb on - strand, within Xcc-8004.611.1 at 563.530 kb on + strand, within Xcc-8004.611.1 at 563.530 kb on + strand, within Xcc-8004.611.1 at 563.530 kb on + strand, within Xcc-8004.611.1 at 563.530 kb on + strand, within Xcc-8004.611.1 at 563.531 kb on - strand, within Xcc-8004.611.1 at 563.531 kb on - strand, within Xcc-8004.611.1 at 563.567 kb on + strand, within Xcc-8004.611.1 at 563.568 kb on - strand, within Xcc-8004.611.1 at 563.718 kb on - strand, within Xcc-8004.611.1 at 563.724 kb on - strand, within Xcc-8004.611.1 at 563.740 kb on + strand, within Xcc-8004.611.1 at 563.806 kb on - strand, within Xcc-8004.611.1 at 563.864 kb on + strand, within Xcc-8004.611.1 at 563.924 kb on + strand, within Xcc-8004.611.1 at 563.924 kb on + strand, within Xcc-8004.611.1 at 564.210 kb on - strand, within Xcc-8004.611.1 at 564.330 kb on + strand, within Xcc-8004.611.1 at 564.330 kb on + strand, within Xcc-8004.611.1 at 564.330 kb on + strand, within Xcc-8004.611.1 at 564.374 kb on + strand, within Xcc-8004.611.1 at 564.374 kb on + strand, within Xcc-8004.611.1 at 564.374 kb on + strand, within Xcc-8004.611.1 at 564.446 kb on + strand, within Xcc-8004.611.1 at 564.446 kb on + strand, within Xcc-8004.611.1 at 564.447 kb on - strand, within Xcc-8004.611.1 at 564.447 kb on - strand, within Xcc-8004.611.1 at 564.504 kb on - strand, within Xcc-8004.611.1 at 564.656 kb on + strand, within Xcc-8004.611.1 at 564.863 kb on + strand, within Xcc-8004.611.1 at 564.864 kb on - strand, within Xcc-8004.611.1 at 564.865 kb on + strand, within Xcc-8004.611.1 at 564.865 kb on + strand, within Xcc-8004.611.1 at 564.865 kb on + strand, within Xcc-8004.611.1 at 564.866 kb on - strand, within Xcc-8004.611.1 at 564.866 kb on - strand, within Xcc-8004.611.1 at 564.866 kb on - strand, within Xcc-8004.611.1 at 564.911 kb on + strand, within Xcc-8004.611.1 at 564.912 kb on - strand, within Xcc-8004.611.1 at 564.915 kb on - strand, within Xcc-8004.611.1 at 564.915 kb on - strand, within Xcc-8004.611.1 at 565.040 kb on + strand, within Xcc-8004.611.1 at 565.055 kb on + strand, within Xcc-8004.611.1 at 565.055 kb on + strand, within Xcc-8004.611.1 at 565.056 kb on - strand, within Xcc-8004.611.1 at 565.076 kb on + strand, within Xcc-8004.611.1 at 565.076 kb on + strand, within Xcc-8004.611.1 at 565.077 kb on - strand, within Xcc-8004.611.1 at 565.424 kb on + strand, within Xcc-8004.611.1 at 565.424 kb on + strand, within Xcc-8004.611.1 at 565.489 kb on + strand, within Xcc-8004.611.1 at 565.490 kb on - strand, within Xcc-8004.611.1 at 565.490 kb on - strand, within Xcc-8004.611.1 at 565.632 kb on - strand, within Xcc-8004.611.1 at 565.637 kb on + strand, within Xcc-8004.611.1 at 565.637 kb on + strand, within Xcc-8004.611.1 at 565.767 kb on - strand, within Xcc-8004.611.1 at 566.088 kb on - strand at 566.308 kb on + strand, within Xcc-8004.612.1 at 566.309 kb on - strand, within Xcc-8004.612.1 at 566.332 kb on + strand, within Xcc-8004.612.1 at 566.333 kb on - strand, within Xcc-8004.612.1 at 566.362 kb on + strand, within Xcc-8004.612.1 at 566.362 kb on + strand, within Xcc-8004.612.1 at 566.365 kb on - strand, within Xcc-8004.612.1 at 566.432 kb on + strand, within Xcc-8004.612.1 at 566.432 kb on + strand, within Xcc-8004.612.1 at 566.444 kb on - strand, within Xcc-8004.612.1 at 566.444 kb on - strand, within Xcc-8004.612.1 at 566.494 kb on + strand, within Xcc-8004.612.1 at 566.520 kb on + strand, within Xcc-8004.612.1 at 566.520 kb on + strand, within Xcc-8004.612.1 at 566.521 kb on - strand, within Xcc-8004.612.1 at 566.525 kb on - strand, within Xcc-8004.612.1 at 566.525 kb on - strand, within Xcc-8004.612.1 at 566.535 kb on + strand, within Xcc-8004.612.1 at 566.535 kb on + strand, within Xcc-8004.612.1 at 566.571 kb on - strand, within Xcc-8004.612.1 at 566.571 kb on - strand, within Xcc-8004.612.1 at 566.574 kb on + strand, within Xcc-8004.612.1 at 566.574 kb on + strand, within Xcc-8004.612.1 at 566.574 kb on + strand, within Xcc-8004.612.1 at 566.575 kb on - strand, within Xcc-8004.612.1 at 566.575 kb on - strand, within Xcc-8004.612.1 at 566.645 kb on + strand, within Xcc-8004.612.1 at 566.778 kb on + strand, within Xcc-8004.612.1 at 566.890 kb on + strand, within Xcc-8004.612.1 at 566.891 kb on - strand, within Xcc-8004.612.1 at 566.939 kb on + strand, within Xcc-8004.612.1 at 566.939 kb on + strand, within Xcc-8004.612.1 at 566.940 kb on - strand, within Xcc-8004.612.1 at 566.949 kb on + strand, within Xcc-8004.612.1 at 566.949 kb on + strand, within Xcc-8004.612.1 at 566.950 kb on - strand, within Xcc-8004.612.1 at 566.950 kb on - strand, within Xcc-8004.612.1 at 566.950 kb on - strand, within Xcc-8004.612.1 at 566.950 kb on - strand, within Xcc-8004.612.1 at 566.952 kb on + strand, within Xcc-8004.612.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 562,153 - Xcc-8004.609.1 0.57 -0.4 562,569 + -2.9 562,569 + +0.5 562,569 + +0.5 562,612 + -0.8 562,612 + +1.0 562,612 + -0.4 562,612 + +0.2 562,616 + +0.3 562,616 + -1.2 562,617 - +0.4 562,617 - -0.3 562,617 - +0.6 562,617 - +0.6 562,636 - +0.1 562,705 - Xcc-8004.610.1 0.22 -0.1 562,872 + Xcc-8004.610.1 0.68 +0.9 562,872 + Xcc-8004.610.1 0.68 +0.3 562,873 - Xcc-8004.610.1 0.68 -1.6 562,898 - Xcc-8004.610.1 0.75 +0.5 562,994 + -0.1 563,113 + +0.4 563,114 - +0.8 563,175 - +0.5 563,310 + -0.4 563,310 + -0.5 563,351 - -0.7 563,446 + Xcc-8004.611.1 0.11 -0.0 563,468 + Xcc-8004.611.1 0.12 +0.8 563,469 - Xcc-8004.611.1 0.12 -0.2 563,469 - Xcc-8004.611.1 0.12 -1.1 563,526 + Xcc-8004.611.1 0.14 +1.6 563,527 - Xcc-8004.611.1 0.14 -0.2 563,530 + Xcc-8004.611.1 0.14 +0.3 563,530 + Xcc-8004.611.1 0.14 +0.2 563,530 + Xcc-8004.611.1 0.14 -1.0 563,530 + Xcc-8004.611.1 0.14 -0.1 563,531 - Xcc-8004.611.1 0.14 -0.4 563,531 - Xcc-8004.611.1 0.14 -1.0 563,567 + Xcc-8004.611.1 0.15 +0.0 563,568 - Xcc-8004.611.1 0.15 +0.8 563,718 - Xcc-8004.611.1 0.20 -0.9 563,724 - Xcc-8004.611.1 0.20 -0.5 563,740 + Xcc-8004.611.1 0.21 +0.9 563,806 - Xcc-8004.611.1 0.23 +0.7 563,864 + Xcc-8004.611.1 0.25 +0.6 563,924 + Xcc-8004.611.1 0.27 +0.2 563,924 + Xcc-8004.611.1 0.27 -0.9 564,210 - Xcc-8004.611.1 0.37 -1.0 564,330 + Xcc-8004.611.1 0.41 -1.0 564,330 + Xcc-8004.611.1 0.41 +0.1 564,330 + Xcc-8004.611.1 0.41 -0.6 564,374 + Xcc-8004.611.1 0.42 -0.1 564,374 + Xcc-8004.611.1 0.42 -0.9 564,374 + Xcc-8004.611.1 0.42 -0.3 564,446 + Xcc-8004.611.1 0.45 -0.1 564,446 + Xcc-8004.611.1 0.45 -1.7 564,447 - Xcc-8004.611.1 0.45 -1.0 564,447 - Xcc-8004.611.1 0.45 -0.9 564,504 - Xcc-8004.611.1 0.47 +0.5 564,656 + Xcc-8004.611.1 0.52 +0.5 564,863 + Xcc-8004.611.1 0.59 -0.1 564,864 - Xcc-8004.611.1 0.59 -1.0 564,865 + Xcc-8004.611.1 0.59 -0.5 564,865 + Xcc-8004.611.1 0.59 +0.3 564,865 + Xcc-8004.611.1 0.59 -0.4 564,866 - Xcc-8004.611.1 0.59 +0.0 564,866 - Xcc-8004.611.1 0.59 -1.3 564,866 - Xcc-8004.611.1 0.59 +0.4 564,911 + Xcc-8004.611.1 0.60 +0.5 564,912 - Xcc-8004.611.1 0.60 -0.9 564,915 - Xcc-8004.611.1 0.60 -0.2 564,915 - Xcc-8004.611.1 0.60 -0.5 565,040 + Xcc-8004.611.1 0.65 -0.2 565,055 + Xcc-8004.611.1 0.65 +0.0 565,055 + Xcc-8004.611.1 0.65 +0.1 565,056 - Xcc-8004.611.1 0.65 -1.8 565,076 + Xcc-8004.611.1 0.66 -0.9 565,076 + Xcc-8004.611.1 0.66 -0.6 565,077 - Xcc-8004.611.1 0.66 +0.1 565,424 + Xcc-8004.611.1 0.77 +0.9 565,424 + Xcc-8004.611.1 0.77 +1.0 565,489 + Xcc-8004.611.1 0.80 -1.2 565,490 - Xcc-8004.611.1 0.80 -0.2 565,490 - Xcc-8004.611.1 0.80 -0.1 565,632 - Xcc-8004.611.1 0.84 +0.1 565,637 + Xcc-8004.611.1 0.85 +1.1 565,637 + Xcc-8004.611.1 0.85 -0.8 565,767 - Xcc-8004.611.1 0.89 -1.6 566,088 - -0.4 566,308 + Xcc-8004.612.1 0.16 -0.3 566,309 - Xcc-8004.612.1 0.17 +0.6 566,332 + Xcc-8004.612.1 0.18 -0.2 566,333 - Xcc-8004.612.1 0.18 +0.7 566,362 + Xcc-8004.612.1 0.21 -0.0 566,362 + Xcc-8004.612.1 0.21 +0.4 566,365 - Xcc-8004.612.1 0.21 +0.3 566,432 + Xcc-8004.612.1 0.26 +1.4 566,432 + Xcc-8004.612.1 0.26 +0.2 566,444 - Xcc-8004.612.1 0.27 +0.0 566,444 - Xcc-8004.612.1 0.27 -0.4 566,494 + Xcc-8004.612.1 0.31 +0.2 566,520 + Xcc-8004.612.1 0.33 -0.4 566,520 + Xcc-8004.612.1 0.33 -1.2 566,521 - Xcc-8004.612.1 0.33 +1.0 566,525 - Xcc-8004.612.1 0.33 +0.5 566,525 - Xcc-8004.612.1 0.33 +0.5 566,535 + Xcc-8004.612.1 0.34 -0.8 566,535 + Xcc-8004.612.1 0.34 +0.2 566,571 - Xcc-8004.612.1 0.37 -0.9 566,571 - Xcc-8004.612.1 0.37 -1.0 566,574 + Xcc-8004.612.1 0.37 -0.4 566,574 + Xcc-8004.612.1 0.37 -0.3 566,574 + Xcc-8004.612.1 0.37 -1.4 566,575 - Xcc-8004.612.1 0.37 -1.8 566,575 - Xcc-8004.612.1 0.37 -0.5 566,645 + Xcc-8004.612.1 0.43 +0.2 566,778 + Xcc-8004.612.1 0.53 +0.2 566,890 + Xcc-8004.612.1 0.61 +0.4 566,891 - Xcc-8004.612.1 0.62 -0.3 566,939 + Xcc-8004.612.1 0.65 -0.6 566,939 + Xcc-8004.612.1 0.65 +0.9 566,940 - Xcc-8004.612.1 0.65 +0.3 566,949 + Xcc-8004.612.1 0.66 -1.6 566,949 + Xcc-8004.612.1 0.66 -0.5 566,950 - Xcc-8004.612.1 0.66 -1.0 566,950 - Xcc-8004.612.1 0.66 -0.3 566,950 - Xcc-8004.612.1 0.66 +1.5 566,950 - Xcc-8004.612.1 0.66 +0.9 566,952 + Xcc-8004.612.1 0.66 +0.6
Or see this region's nucleotide sequence