Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.583.1 and Xcc-8004.584.1 are separated by 114 nucleotides Xcc-8004.584.1 and Xcc-8004.585.1 overlap by 4 nucleotides Xcc-8004.585.1 and Xcc-8004.586.1 overlap by 4 nucleotides Xcc-8004.586.1 and Xcc-8004.587.1 overlap by 4 nucleotides
Xcc-8004.583.1: Xcc-8004.583.1 - serine/threonine protein kinase, at 540,983 to 541,633
Xcc-8004.583.1
Xcc-8004.584.1: Xcc-8004.584.1 - Na(+) H(+) antiporter subunit G, at 541,748 to 542,170
Xcc-8004.584.1
Xcc-8004.585.1: Xcc-8004.585.1 - Na(+) H(+) antiporter subunit F, at 542,167 to 542,451
Xcc-8004.585.1
Xcc-8004.586.1: Xcc-8004.586.1 - Na(+) H(+) antiporter subunit E, at 542,448 to 542,954
Xcc-8004.586.1
Xcc-8004.587.1: Xcc-8004.587.1 - Na(+) H(+) antiporter subunit D, at 542,951 to 544,510
Xcc-8004.587.1
Position (kb) 542
543 Strain fitness (log2 ratio) -2
-1
0
1
2 at 541.272 kb on + strand, within Xcc-8004.583.1 at 541.272 kb on + strand, within Xcc-8004.583.1 at 541.272 kb on + strand, within Xcc-8004.583.1 at 541.273 kb on - strand, within Xcc-8004.583.1 at 541.273 kb on - strand, within Xcc-8004.583.1 at 541.273 kb on - strand, within Xcc-8004.583.1 at 541.273 kb on - strand, within Xcc-8004.583.1 at 541.304 kb on + strand, within Xcc-8004.583.1 at 541.304 kb on + strand, within Xcc-8004.583.1 at 541.304 kb on + strand, within Xcc-8004.583.1 at 541.305 kb on - strand, within Xcc-8004.583.1 at 541.305 kb on - strand, within Xcc-8004.583.1 at 541.379 kb on + strand, within Xcc-8004.583.1 at 541.380 kb on - strand, within Xcc-8004.583.1 at 541.457 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.491 kb on - strand, within Xcc-8004.583.1 at 541.491 kb on - strand, within Xcc-8004.583.1 at 541.491 kb on - strand, within Xcc-8004.583.1 at 541.491 kb on - strand, within Xcc-8004.583.1 at 541.613 kb on + strand at 541.613 kb on + strand at 541.613 kb on + strand at 541.613 kb on + strand at 541.614 kb on - strand at 541.614 kb on - strand at 541.689 kb on + strand at 541.689 kb on + strand at 541.690 kb on - strand at 541.690 kb on - strand at 541.690 kb on - strand at 542.196 kb on - strand, within Xcc-8004.585.1 at 542.196 kb on - strand, within Xcc-8004.585.1 at 542.196 kb on - strand, within Xcc-8004.585.1 at 542.440 kb on - strand at 542.440 kb on - strand at 542.440 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 541,272 + Xcc-8004.583.1 0.44 -1.0 541,272 + Xcc-8004.583.1 0.44 +1.2 541,272 + Xcc-8004.583.1 0.44 -0.7 541,273 - Xcc-8004.583.1 0.45 +0.7 541,273 - Xcc-8004.583.1 0.45 +0.6 541,273 - Xcc-8004.583.1 0.45 +0.3 541,273 - Xcc-8004.583.1 0.45 +0.0 541,304 + Xcc-8004.583.1 0.49 +0.8 541,304 + Xcc-8004.583.1 0.49 -0.0 541,304 + Xcc-8004.583.1 0.49 +0.6 541,305 - Xcc-8004.583.1 0.49 -0.2 541,305 - Xcc-8004.583.1 0.49 +0.5 541,379 + Xcc-8004.583.1 0.61 +0.5 541,380 - Xcc-8004.583.1 0.61 -1.4 541,457 + Xcc-8004.583.1 0.73 -0.1 541,490 + Xcc-8004.583.1 0.78 +0.0 541,490 + Xcc-8004.583.1 0.78 -0.3 541,490 + Xcc-8004.583.1 0.78 -0.3 541,490 + Xcc-8004.583.1 0.78 +0.2 541,490 + Xcc-8004.583.1 0.78 -2.4 541,490 + Xcc-8004.583.1 0.78 -0.3 541,490 + Xcc-8004.583.1 0.78 +1.9 541,490 + Xcc-8004.583.1 0.78 -0.4 541,490 + Xcc-8004.583.1 0.78 +0.6 541,490 + Xcc-8004.583.1 0.78 -0.6 541,491 - Xcc-8004.583.1 0.78 -0.5 541,491 - Xcc-8004.583.1 0.78 -2.1 541,491 - Xcc-8004.583.1 0.78 -0.5 541,491 - Xcc-8004.583.1 0.78 +0.4 541,613 + +1.0 541,613 + -0.7 541,613 + -0.1 541,613 + -1.3 541,614 - -0.7 541,614 - -0.5 541,689 + -0.9 541,689 + -1.1 541,690 - -0.1 541,690 - +0.7 541,690 - -0.8 542,196 - Xcc-8004.585.1 0.10 -1.5 542,196 - Xcc-8004.585.1 0.10 +0.1 542,196 - Xcc-8004.585.1 0.10 -1.8 542,440 - +0.5 542,440 - +2.5 542,440 - -0.6
Or see this region's nucleotide sequence