Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.52.1 and Xcc-8004.53.1 are separated by 299 nucleotides Xcc-8004.53.1 and Xcc-8004.54.1 overlap by 4 nucleotides Xcc-8004.54.1 and Xcc-8004.55.1 are separated by 134 nucleotides
Xcc-8004.52.1: Xcc-8004.52.1 - transcriptional regulator lysR family, at 50,747 to 51,640
Xcc-8004.52.1
Xcc-8004.53.1: Xcc-8004.53.1 - hypothetical protein, at 51,940 to 52,245
Xcc-8004.53.1
Xcc-8004.54.1: Xcc-8004.54.1 - ThiJ/PfpI family protein, at 52,242 to 52,919
Xcc-8004.54.1
Xcc-8004.55.1: Xcc-8004.55.1 - transcriptional regulator, at 53,054 to 53,944
Xcc-8004.55.1
Position (kb) 51
52
53 Strain fitness (log2 ratio) -2
-1
0
1
2 at 50.957 kb on + strand, within Xcc-8004.52.1 at 50.957 kb on + strand, within Xcc-8004.52.1 at 50.958 kb on - strand, within Xcc-8004.52.1 at 50.958 kb on - strand, within Xcc-8004.52.1 at 50.958 kb on - strand, within Xcc-8004.52.1 at 50.971 kb on + strand, within Xcc-8004.52.1 at 50.971 kb on + strand, within Xcc-8004.52.1 at 50.972 kb on - strand, within Xcc-8004.52.1 at 50.972 kb on - strand, within Xcc-8004.52.1 at 51.026 kb on + strand, within Xcc-8004.52.1 at 51.026 kb on + strand, within Xcc-8004.52.1 at 51.026 kb on + strand, within Xcc-8004.52.1 at 51.026 kb on + strand, within Xcc-8004.52.1 at 51.026 kb on + strand, within Xcc-8004.52.1 at 51.027 kb on - strand, within Xcc-8004.52.1 at 51.027 kb on - strand, within Xcc-8004.52.1 at 51.127 kb on - strand, within Xcc-8004.52.1 at 51.183 kb on + strand, within Xcc-8004.52.1 at 51.183 kb on + strand, within Xcc-8004.52.1 at 51.183 kb on + strand, within Xcc-8004.52.1 at 51.183 kb on + strand, within Xcc-8004.52.1 at 51.184 kb on - strand, within Xcc-8004.52.1 at 51.184 kb on - strand, within Xcc-8004.52.1 at 51.184 kb on - strand, within Xcc-8004.52.1 at 51.184 kb on - strand, within Xcc-8004.52.1 at 51.444 kb on + strand, within Xcc-8004.52.1 at 51.445 kb on - strand, within Xcc-8004.52.1 at 51.445 kb on - strand, within Xcc-8004.52.1 at 51.547 kb on + strand, within Xcc-8004.52.1 at 51.547 kb on + strand, within Xcc-8004.52.1 at 51.596 kb on - strand at 51.612 kb on + strand at 51.612 kb on + strand at 51.612 kb on + strand at 51.612 kb on + strand at 51.612 kb on + strand at 51.612 kb on + strand at 51.612 kb on + strand at 51.613 kb on - strand at 51.613 kb on - strand at 51.613 kb on - strand at 51.674 kb on + strand at 51.674 kb on + strand at 51.785 kb on + strand at 51.785 kb on + strand at 51.785 kb on + strand at 51.785 kb on + strand at 51.785 kb on + strand at 51.786 kb on - strand at 51.791 kb on + strand at 51.791 kb on + strand at 51.792 kb on - strand at 51.830 kb on - strand at 51.893 kb on + strand at 51.894 kb on - strand at 52.016 kb on + strand, within Xcc-8004.53.1 at 52.016 kb on + strand, within Xcc-8004.53.1 at 52.017 kb on - strand, within Xcc-8004.53.1 at 52.017 kb on - strand, within Xcc-8004.53.1 at 52.115 kb on + strand, within Xcc-8004.53.1 at 52.177 kb on + strand, within Xcc-8004.53.1 at 52.177 kb on + strand, within Xcc-8004.53.1 at 52.177 kb on + strand, within Xcc-8004.53.1 at 52.178 kb on - strand, within Xcc-8004.53.1 at 52.178 kb on - strand, within Xcc-8004.53.1 at 52.366 kb on + strand, within Xcc-8004.54.1 at 52.366 kb on + strand, within Xcc-8004.54.1 at 52.366 kb on + strand, within Xcc-8004.54.1 at 52.367 kb on - strand, within Xcc-8004.54.1 at 52.367 kb on - strand, within Xcc-8004.54.1 at 52.367 kb on - strand, within Xcc-8004.54.1 at 52.427 kb on - strand, within Xcc-8004.54.1 at 52.645 kb on + strand, within Xcc-8004.54.1 at 52.646 kb on - strand, within Xcc-8004.54.1 at 52.680 kb on - strand, within Xcc-8004.54.1 at 52.680 kb on - strand, within Xcc-8004.54.1 at 52.744 kb on + strand, within Xcc-8004.54.1 at 52.846 kb on + strand, within Xcc-8004.54.1 at 52.971 kb on + strand at 52.971 kb on + strand at 52.971 kb on + strand at 52.971 kb on + strand at 52.971 kb on + strand at 52.971 kb on + strand at 52.971 kb on + strand at 52.971 kb on + strand at 52.971 kb on + strand at 52.971 kb on + strand at 52.971 kb on + strand at 52.971 kb on + strand at 52.971 kb on + strand at 52.971 kb on + strand at 52.971 kb on + strand at 52.972 kb on - strand at 52.972 kb on - strand at 52.972 kb on - strand at 52.972 kb on - strand at 52.972 kb on - strand at 52.972 kb on - strand at 52.972 kb on - strand at 52.972 kb on - strand at 52.972 kb on - strand at 52.972 kb on - strand at 52.972 kb on - strand at 52.994 kb on + strand at 52.994 kb on + strand at 52.995 kb on - strand at 52.995 kb on - strand at 52.995 kb on - strand at 53.210 kb on + strand, within Xcc-8004.55.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 50,957 + Xcc-8004.52.1 0.23 +0.3 50,957 + Xcc-8004.52.1 0.23 -1.4 50,958 - Xcc-8004.52.1 0.24 -0.1 50,958 - Xcc-8004.52.1 0.24 +1.0 50,958 - Xcc-8004.52.1 0.24 -1.9 50,971 + Xcc-8004.52.1 0.25 +0.3 50,971 + Xcc-8004.52.1 0.25 -1.3 50,972 - Xcc-8004.52.1 0.25 -0.3 50,972 - Xcc-8004.52.1 0.25 +2.5 51,026 + Xcc-8004.52.1 0.31 -0.2 51,026 + Xcc-8004.52.1 0.31 -0.3 51,026 + Xcc-8004.52.1 0.31 -0.1 51,026 + Xcc-8004.52.1 0.31 -1.1 51,026 + Xcc-8004.52.1 0.31 +0.4 51,027 - Xcc-8004.52.1 0.31 +0.6 51,027 - Xcc-8004.52.1 0.31 -0.9 51,127 - Xcc-8004.52.1 0.43 -0.2 51,183 + Xcc-8004.52.1 0.49 -0.8 51,183 + Xcc-8004.52.1 0.49 -1.4 51,183 + Xcc-8004.52.1 0.49 +0.6 51,183 + Xcc-8004.52.1 0.49 +0.2 51,184 - Xcc-8004.52.1 0.49 +0.4 51,184 - Xcc-8004.52.1 0.49 -2.1 51,184 - Xcc-8004.52.1 0.49 -0.5 51,184 - Xcc-8004.52.1 0.49 +0.1 51,444 + Xcc-8004.52.1 0.78 +0.3 51,445 - Xcc-8004.52.1 0.78 -0.2 51,445 - Xcc-8004.52.1 0.78 +0.5 51,547 + Xcc-8004.52.1 0.89 +0.3 51,547 + Xcc-8004.52.1 0.89 -0.3 51,596 - -0.8 51,612 + -2.0 51,612 + +0.4 51,612 + -1.2 51,612 + -0.3 51,612 + -2.3 51,612 + -0.2 51,612 + -1.7 51,613 - -0.5 51,613 - -1.1 51,613 - -0.6 51,674 + +0.6 51,674 + -1.5 51,785 + +0.5 51,785 + -0.3 51,785 + -0.2 51,785 + -1.0 51,785 + -1.4 51,786 - -0.0 51,791 + +0.1 51,791 + -0.3 51,792 - -1.4 51,830 - -0.5 51,893 + +0.2 51,894 - +0.9 52,016 + Xcc-8004.53.1 0.25 -0.4 52,016 + Xcc-8004.53.1 0.25 -0.8 52,017 - Xcc-8004.53.1 0.25 -0.6 52,017 - Xcc-8004.53.1 0.25 -1.0 52,115 + Xcc-8004.53.1 0.57 -1.0 52,177 + Xcc-8004.53.1 0.77 -2.3 52,177 + Xcc-8004.53.1 0.77 +0.6 52,177 + Xcc-8004.53.1 0.77 -1.1 52,178 - Xcc-8004.53.1 0.78 +0.2 52,178 - Xcc-8004.53.1 0.78 -0.7 52,366 + Xcc-8004.54.1 0.18 -0.2 52,366 + Xcc-8004.54.1 0.18 +0.6 52,366 + Xcc-8004.54.1 0.18 +0.9 52,367 - Xcc-8004.54.1 0.18 +0.2 52,367 - Xcc-8004.54.1 0.18 +0.0 52,367 - Xcc-8004.54.1 0.18 +0.1 52,427 - Xcc-8004.54.1 0.27 +1.9 52,645 + Xcc-8004.54.1 0.59 -0.0 52,646 - Xcc-8004.54.1 0.60 -0.4 52,680 - Xcc-8004.54.1 0.65 -1.2 52,680 - Xcc-8004.54.1 0.65 -2.2 52,744 + Xcc-8004.54.1 0.74 -1.2 52,846 + Xcc-8004.54.1 0.89 -0.8 52,971 + +0.1 52,971 + -0.0 52,971 + +0.7 52,971 + +0.5 52,971 + +0.8 52,971 + +0.8 52,971 + +0.6 52,971 + -0.1 52,971 + -0.5 52,971 + +0.9 52,971 + -1.9 52,971 + +1.5 52,971 + -0.4 52,971 + +0.2 52,971 + -1.6 52,972 - -0.5 52,972 - +0.7 52,972 - -1.0 52,972 - -0.4 52,972 - +0.4 52,972 - -0.2 52,972 - -0.5 52,972 - -0.1 52,972 - -0.5 52,972 - -0.4 52,972 - -1.0 52,994 + -0.2 52,994 + +0.8 52,995 - +0.3 52,995 - +1.0 52,995 - +1.6 53,210 + Xcc-8004.55.1 0.18 +0.5
Or see this region's nucleotide sequence