Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5252.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5250.1 and Xcc-8004.5252.1 are separated by 353 nucleotidesXcc-8004.5252.1 and Xcc-8004.5253.1 are separated by 292 nucleotidesXcc-8004.5253.1 and Xcc-8004.5254.1 overlap by 4 nucleotides Xcc-8004.5250.1: Xcc-8004.5250.1 - Glycerol-3-phosphate acyltransferase (EC 2.3.1.15), at 4,987,510 to 4,989,897 Xcc-8004.5250.1 Xcc-8004.5252.1: Xcc-8004.5252.1 - FIG01210658: hypothetical protein, at 4,990,251 to 4,991,225 Xcc-8004.5252.1 Xcc-8004.5253.1: Xcc-8004.5253.1 - hypothetical protein, at 4,991,518 to 4,991,631 Xcc-8004.5253.1 Xcc-8004.5254.1: Xcc-8004.5254.1 - Transcriptional regulator, LacI family, at 4,991,628 to 4,992,680 Xcc-8004.5254.1 Position (kb) 4990 4991 4992Strain fitness (log2 ratio) -2 -1 0 1 2at 4990.397 kb on - strand, within Xcc-8004.5252.1at 4990.547 kb on - strand, within Xcc-8004.5252.1at 4990.756 kb on + strand, within Xcc-8004.5252.1at 4990.757 kb on - strand, within Xcc-8004.5252.1at 4990.757 kb on - strand, within Xcc-8004.5252.1at 4990.757 kb on - strand, within Xcc-8004.5252.1at 4990.757 kb on - strand, within Xcc-8004.5252.1at 4990.780 kb on + strand, within Xcc-8004.5252.1at 4990.801 kb on + strand, within Xcc-8004.5252.1at 4990.801 kb on + strand, within Xcc-8004.5252.1at 4990.801 kb on + strand, within Xcc-8004.5252.1at 4990.801 kb on + strand, within Xcc-8004.5252.1at 4990.801 kb on + strand, within Xcc-8004.5252.1at 4990.801 kb on + strand, within Xcc-8004.5252.1at 4990.802 kb on - strand, within Xcc-8004.5252.1at 4990.802 kb on - strand, within Xcc-8004.5252.1at 4990.802 kb on - strand, within Xcc-8004.5252.1at 4990.802 kb on - strand, within Xcc-8004.5252.1at 4990.935 kb on + strand, within Xcc-8004.5252.1at 4990.935 kb on + strand, within Xcc-8004.5252.1at 4990.936 kb on - strand, within Xcc-8004.5252.1at 4990.936 kb on - strand, within Xcc-8004.5252.1at 4990.936 kb on - strand, within Xcc-8004.5252.1at 4991.011 kb on + strand, within Xcc-8004.5252.1at 4991.012 kb on - strand, within Xcc-8004.5252.1at 4991.012 kb on - strand, within Xcc-8004.5252.1at 4991.012 kb on - strand, within Xcc-8004.5252.1at 4991.012 kb on - strand, within Xcc-8004.5252.1at 4991.012 kb on - strand, within Xcc-8004.5252.1at 4991.012 kb on - strand, within Xcc-8004.5252.1at 4991.012 kb on - strand, within Xcc-8004.5252.1at 4991.012 kb on - strand, within Xcc-8004.5252.1at 4991.012 kb on - strand, within Xcc-8004.5252.1at 4991.042 kb on - strand, within Xcc-8004.5252.1at 4991.375 kb on + strandat 4991.430 kb on - strandat 4991.481 kb on + strandat 4991.481 kb on + strandat 4991.567 kb on + strand, within Xcc-8004.5253.1at 4991.761 kb on + strand, within Xcc-8004.5254.1at 4991.762 kb on - strand, within Xcc-8004.5254.1at 4991.762 kb on - strand, within Xcc-8004.5254.1at 4991.762 kb on - strand, within Xcc-8004.5254.1at 4991.762 kb on - strand, within Xcc-8004.5254.1at 4991.762 kb on - strand, within Xcc-8004.5254.1at 4991.787 kb on + strand, within Xcc-8004.5254.1at 4991.787 kb on + strand, within Xcc-8004.5254.1at 4991.787 kb on + strand, within Xcc-8004.5254.1at 4991.787 kb on + strand, within Xcc-8004.5254.1at 4991.787 kb on + strand, within Xcc-8004.5254.1at 4991.787 kb on + strand, within Xcc-8004.5254.1at 4991.787 kb on + strand, within Xcc-8004.5254.1at 4991.787 kb on + strand, within Xcc-8004.5254.1at 4991.787 kb on + strand, within Xcc-8004.5254.1at 4991.787 kb on + strand, within Xcc-8004.5254.1at 4991.787 kb on + strand, within Xcc-8004.5254.1at 4991.787 kb on + strand, within Xcc-8004.5254.1at 4991.787 kb on + strand, within Xcc-8004.5254.1at 4991.787 kb on + strand, within Xcc-8004.5254.1at 4991.788 kb on - strand, within Xcc-8004.5254.1at 4991.788 kb on - strand, within Xcc-8004.5254.1at 4991.788 kb on - strand, within Xcc-8004.5254.1at 4991.788 kb on - strand, within Xcc-8004.5254.1at 4991.788 kb on - strand, within Xcc-8004.5254.1at 4991.788 kb on - strand, within Xcc-8004.5254.1at 4991.788 kb on - strand, within Xcc-8004.5254.1at 4991.788 kb on - strand, within Xcc-8004.5254.1at 4991.788 kb on - strand, within Xcc-8004.5254.1at 4991.788 kb on - strand, within Xcc-8004.5254.1at 4991.788 kb on - strand, within Xcc-8004.5254.1at 4991.788 kb on - strand, within Xcc-8004.5254.1at 4991.788 kb on - strand, within Xcc-8004.5254.1at 4991.923 kb on - strand, within Xcc-8004.5254.1at 4992.135 kb on + strand, within Xcc-8004.5254.1at 4992.135 kb on + strand, within Xcc-8004.5254.1at 4992.135 kb on + strand, within Xcc-8004.5254.1at 4992.135 kb on + strand, within Xcc-8004.5254.1at 4992.135 kb on + strand, within Xcc-8004.5254.1at 4992.135 kb on + strand, within Xcc-8004.5254.1at 4992.135 kb on + strand, within Xcc-8004.5254.1at 4992.135 kb on + strand, within Xcc-8004.5254.1at 4992.135 kb on + strand, within Xcc-8004.5254.1at 4992.135 kb on + strand, within Xcc-8004.5254.1at 4992.135 kb on + strand, within Xcc-8004.5254.1at 4992.135 kb on + strand, within Xcc-8004.5254.1at 4992.135 kb on + strand, within Xcc-8004.5254.1at 4992.136 kb on - strand, within Xcc-8004.5254.1at 4992.136 kb on - strand, within Xcc-8004.5254.1at 4992.136 kb on - strand, within Xcc-8004.5254.1at 4992.136 kb on - strand, within Xcc-8004.5254.1at 4992.136 kb on - strand, within Xcc-8004.5254.1at 4992.136 kb on - strand, within Xcc-8004.5254.1at 4992.136 kb on - strand, within Xcc-8004.5254.1at 4992.136 kb on - strand, within Xcc-8004.5254.1at 4992.136 kb on - strand, within Xcc-8004.5254.1at 4992.136 kb on - strand, within Xcc-8004.5254.1at 4992.136 kb on - strand, within Xcc-8004.5254.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,990,397 - Xcc-8004.5252.1 0.15 -1.3
4,990,547 - Xcc-8004.5252.1 0.30 +0.0
4,990,756 + Xcc-8004.5252.1 0.52 +0.0
4,990,757 - Xcc-8004.5252.1 0.52 -1.6
4,990,757 - Xcc-8004.5252.1 0.52 +0.9
4,990,757 - Xcc-8004.5252.1 0.52 -1.2
4,990,757 - Xcc-8004.5252.1 0.52 -1.5
4,990,780 + Xcc-8004.5252.1 0.54 +0.2
4,990,801 + Xcc-8004.5252.1 0.56 -0.1
4,990,801 + Xcc-8004.5252.1 0.56 +0.9
4,990,801 + Xcc-8004.5252.1 0.56 -0.7
4,990,801 + Xcc-8004.5252.1 0.56 -0.5
4,990,801 + Xcc-8004.5252.1 0.56 +0.9
4,990,801 + Xcc-8004.5252.1 0.56 -0.7
4,990,802 - Xcc-8004.5252.1 0.57 +0.9
4,990,802 - Xcc-8004.5252.1 0.57 -1.2
4,990,802 - Xcc-8004.5252.1 0.57 +2.5
4,990,802 - Xcc-8004.5252.1 0.57 +0.2
4,990,935 + Xcc-8004.5252.1 0.70 -0.5
4,990,935 + Xcc-8004.5252.1 0.70 +1.5
4,990,936 - Xcc-8004.5252.1 0.70 +2.5
4,990,936 - Xcc-8004.5252.1 0.70 -0.8
4,990,936 - Xcc-8004.5252.1 0.70 -0.1
4,991,011 + Xcc-8004.5252.1 0.78 +0.2
4,991,012 - Xcc-8004.5252.1 0.78 +0.5
4,991,012 - Xcc-8004.5252.1 0.78 +1.5
4,991,012 - Xcc-8004.5252.1 0.78 -1.9
4,991,012 - Xcc-8004.5252.1 0.78 +0.9
4,991,012 - Xcc-8004.5252.1 0.78 -0.5
4,991,012 - Xcc-8004.5252.1 0.78 -1.6
4,991,012 - Xcc-8004.5252.1 0.78 -1.0
4,991,012 - Xcc-8004.5252.1 0.78 +0.5
4,991,012 - Xcc-8004.5252.1 0.78 +0.2
4,991,042 - Xcc-8004.5252.1 0.81 -0.1
4,991,375 + +0.2
4,991,430 - +0.4
4,991,481 + -0.2
4,991,481 + +0.5
4,991,567 + Xcc-8004.5253.1 0.43 -0.1
4,991,761 + Xcc-8004.5254.1 0.13 -0.3
4,991,762 - Xcc-8004.5254.1 0.13 -1.2
4,991,762 - Xcc-8004.5254.1 0.13 -0.8
4,991,762 - Xcc-8004.5254.1 0.13 -0.4
4,991,762 - Xcc-8004.5254.1 0.13 +0.4
4,991,762 - Xcc-8004.5254.1 0.13 -0.6
4,991,787 + Xcc-8004.5254.1 0.15 +0.7
4,991,787 + Xcc-8004.5254.1 0.15 +0.3
4,991,787 + Xcc-8004.5254.1 0.15 -0.2
4,991,787 + Xcc-8004.5254.1 0.15 +1.2
4,991,787 + Xcc-8004.5254.1 0.15 +0.2
4,991,787 + Xcc-8004.5254.1 0.15 -1.3
4,991,787 + Xcc-8004.5254.1 0.15 -0.1
4,991,787 + Xcc-8004.5254.1 0.15 -0.9
4,991,787 + Xcc-8004.5254.1 0.15 +0.5
4,991,787 + Xcc-8004.5254.1 0.15 -0.9
4,991,787 + Xcc-8004.5254.1 0.15 +0.2
4,991,787 + Xcc-8004.5254.1 0.15 -0.7
4,991,787 + Xcc-8004.5254.1 0.15 -0.1
4,991,787 + Xcc-8004.5254.1 0.15 +0.2
4,991,788 - Xcc-8004.5254.1 0.15 +0.2
4,991,788 - Xcc-8004.5254.1 0.15 +1.1
4,991,788 - Xcc-8004.5254.1 0.15 +0.4
4,991,788 - Xcc-8004.5254.1 0.15 -0.5
4,991,788 - Xcc-8004.5254.1 0.15 -0.7
4,991,788 - Xcc-8004.5254.1 0.15 +0.2
4,991,788 - Xcc-8004.5254.1 0.15 -0.7
4,991,788 - Xcc-8004.5254.1 0.15 +0.5
4,991,788 - Xcc-8004.5254.1 0.15 -0.6
4,991,788 - Xcc-8004.5254.1 0.15 -0.0
4,991,788 - Xcc-8004.5254.1 0.15 -1.1
4,991,788 - Xcc-8004.5254.1 0.15 +0.1
4,991,788 - Xcc-8004.5254.1 0.15 -0.6
4,991,923 - Xcc-8004.5254.1 0.28 -0.7
4,992,135 + Xcc-8004.5254.1 0.48 -0.9
4,992,135 + Xcc-8004.5254.1 0.48 +0.5
4,992,135 + Xcc-8004.5254.1 0.48 -0.5
4,992,135 + Xcc-8004.5254.1 0.48 +0.4
4,992,135 + Xcc-8004.5254.1 0.48 +0.3
4,992,135 + Xcc-8004.5254.1 0.48 +0.3
4,992,135 + Xcc-8004.5254.1 0.48 -0.6
4,992,135 + Xcc-8004.5254.1 0.48 +1.1
4,992,135 + Xcc-8004.5254.1 0.48 +1.3
4,992,135 + Xcc-8004.5254.1 0.48 -0.2
4,992,135 + Xcc-8004.5254.1 0.48 +0.6
4,992,135 + Xcc-8004.5254.1 0.48 +0.1
4,992,135 + Xcc-8004.5254.1 0.48 -0.7
4,992,136 - Xcc-8004.5254.1 0.48 +0.7
4,992,136 - Xcc-8004.5254.1 0.48 +1.0
4,992,136 - Xcc-8004.5254.1 0.48 +0.0
4,992,136 - Xcc-8004.5254.1 0.48 -0.8
4,992,136 - Xcc-8004.5254.1 0.48 -0.8
4,992,136 - Xcc-8004.5254.1 0.48 -2.6
4,992,136 - Xcc-8004.5254.1 0.48 +0.5
4,992,136 - Xcc-8004.5254.1 0.48 -0.4
4,992,136 - Xcc-8004.5254.1 0.48 +0.0
4,992,136 - Xcc-8004.5254.1 0.48 -0.3
4,992,136 - Xcc-8004.5254.1 0.48 +1.4

Or see this region's nucleotide sequence