Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.517.1 and Xcc-8004.518.1 are separated by 581 nucleotides Xcc-8004.518.1 and Xcc-8004.519.1 are separated by 25 nucleotides Xcc-8004.519.1 and Xcc-8004.522.1 overlap by 23 nucleotides
Xcc-8004.517.1: Xcc-8004.517.1 - hypothetical protein, at 471,893 to 472,324
Xcc-8004.517.1
Xcc-8004.518.1: Xcc-8004.518.1 - hypothetical protein, at 472,906 to 473,097
Xcc-8004.518.1
Xcc-8004.519.1: Xcc-8004.519.1 - TonB-dependent receptor; Outer membrane receptor for ferrienterochelin and colicins, at 473,123 to 475,726
Xcc-8004.519.1
Xcc-8004.522.1: Xcc-8004.522.1 - Mobile element protein, at 475,704 to 477,200
Xcc-8004.522.1
Position (kb) 473
474
475
476 Strain fitness (log2 ratio) -2
-1
0
1
2 at 472.150 kb on - strand, within Xcc-8004.517.1 at 472.225 kb on + strand, within Xcc-8004.517.1 at 472.250 kb on + strand, within Xcc-8004.517.1 at 472.250 kb on + strand, within Xcc-8004.517.1 at 472.251 kb on - strand, within Xcc-8004.517.1 at 472.251 kb on - strand, within Xcc-8004.517.1 at 472.251 kb on - strand, within Xcc-8004.517.1 at 472.251 kb on - strand, within Xcc-8004.517.1 at 472.301 kb on + strand at 472.301 kb on + strand at 472.302 kb on - strand at 472.302 kb on - strand at 472.392 kb on + strand at 472.521 kb on - strand at 472.523 kb on + strand at 472.524 kb on - strand at 472.595 kb on + strand at 472.595 kb on + strand at 472.595 kb on + strand at 472.595 kb on + strand at 472.595 kb on + strand at 472.596 kb on - strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.628 kb on + strand at 472.629 kb on - strand at 472.629 kb on - strand at 472.629 kb on - strand at 472.629 kb on - strand at 472.629 kb on - strand at 472.629 kb on - strand at 472.629 kb on - strand at 472.629 kb on - strand at 472.629 kb on - strand at 472.635 kb on + strand at 472.635 kb on + strand at 472.635 kb on + strand at 472.635 kb on + strand at 472.636 kb on - strand at 472.655 kb on + strand at 472.656 kb on - strand at 472.661 kb on + strand at 472.661 kb on + strand at 472.662 kb on - strand at 472.737 kb on + strand at 472.737 kb on + strand at 472.738 kb on - strand at 472.738 kb on - strand at 472.792 kb on + strand at 472.792 kb on + strand at 472.792 kb on + strand at 472.952 kb on + strand, within Xcc-8004.518.1 at 472.969 kb on - strand, within Xcc-8004.518.1 at 472.972 kb on + strand, within Xcc-8004.518.1 at 473.020 kb on + strand, within Xcc-8004.518.1 at 473.020 kb on + strand, within Xcc-8004.518.1 at 473.021 kb on - strand, within Xcc-8004.518.1 at 473.021 kb on - strand, within Xcc-8004.518.1 at 473.050 kb on + strand, within Xcc-8004.518.1 at 473.050 kb on + strand, within Xcc-8004.518.1 at 473.050 kb on + strand, within Xcc-8004.518.1 at 473.050 kb on + strand, within Xcc-8004.518.1 at 473.051 kb on - strand, within Xcc-8004.518.1 at 473.051 kb on - strand, within Xcc-8004.518.1 at 473.051 kb on - strand, within Xcc-8004.518.1 at 473.051 kb on - strand, within Xcc-8004.518.1 at 473.051 kb on - strand, within Xcc-8004.518.1 at 473.051 kb on - strand, within Xcc-8004.518.1 at 473.072 kb on + strand, within Xcc-8004.518.1 at 473.072 kb on + strand, within Xcc-8004.518.1 at 473.073 kb on - strand, within Xcc-8004.518.1 at 473.131 kb on + strand at 473.132 kb on - strand at 473.229 kb on + strand at 473.230 kb on - strand at 473.238 kb on - strand at 473.251 kb on + strand at 473.251 kb on + strand at 473.251 kb on + strand at 473.252 kb on - strand at 473.252 kb on - strand at 473.252 kb on - strand at 473.314 kb on + strand at 473.314 kb on + strand at 473.315 kb on - strand at 473.423 kb on + strand, within Xcc-8004.519.1 at 473.424 kb on - strand, within Xcc-8004.519.1 at 473.442 kb on + strand, within Xcc-8004.519.1 at 473.621 kb on + strand, within Xcc-8004.519.1 at 473.621 kb on + strand, within Xcc-8004.519.1 at 473.622 kb on - strand, within Xcc-8004.519.1 at 473.622 kb on - strand, within Xcc-8004.519.1 at 473.696 kb on + strand, within Xcc-8004.519.1 at 473.696 kb on + strand, within Xcc-8004.519.1 at 473.696 kb on + strand, within Xcc-8004.519.1 at 473.696 kb on + strand, within Xcc-8004.519.1 at 473.696 kb on + strand, within Xcc-8004.519.1 at 473.696 kb on + strand, within Xcc-8004.519.1 at 473.696 kb on + strand, within Xcc-8004.519.1 at 473.696 kb on + strand, within Xcc-8004.519.1 at 473.696 kb on + strand, within Xcc-8004.519.1 at 473.697 kb on - strand, within Xcc-8004.519.1 at 473.697 kb on - strand, within Xcc-8004.519.1 at 473.697 kb on - strand, within Xcc-8004.519.1 at 473.697 kb on - strand, within Xcc-8004.519.1 at 473.697 kb on - strand, within Xcc-8004.519.1 at 473.697 kb on - strand, within Xcc-8004.519.1 at 473.705 kb on - strand, within Xcc-8004.519.1 at 473.894 kb on + strand, within Xcc-8004.519.1 at 473.894 kb on + strand, within Xcc-8004.519.1 at 473.894 kb on + strand, within Xcc-8004.519.1 at 473.895 kb on - strand, within Xcc-8004.519.1 at 473.895 kb on - strand, within Xcc-8004.519.1 at 473.895 kb on - strand, within Xcc-8004.519.1 at 473.895 kb on - strand, within Xcc-8004.519.1 at 474.011 kb on + strand, within Xcc-8004.519.1 at 474.012 kb on - strand, within Xcc-8004.519.1 at 474.019 kb on - strand, within Xcc-8004.519.1 at 474.019 kb on - strand, within Xcc-8004.519.1 at 474.019 kb on - strand, within Xcc-8004.519.1 at 474.050 kb on + strand, within Xcc-8004.519.1 at 474.050 kb on + strand, within Xcc-8004.519.1 at 474.092 kb on + strand, within Xcc-8004.519.1 at 474.093 kb on - strand, within Xcc-8004.519.1 at 474.093 kb on - strand, within Xcc-8004.519.1 at 474.093 kb on - strand, within Xcc-8004.519.1 at 474.093 kb on - strand, within Xcc-8004.519.1 at 474.093 kb on - strand, within Xcc-8004.519.1 at 474.093 kb on - strand, within Xcc-8004.519.1 at 474.093 kb on - strand, within Xcc-8004.519.1 at 474.093 kb on - strand, within Xcc-8004.519.1 at 474.093 kb on - strand, within Xcc-8004.519.1 at 474.126 kb on + strand, within Xcc-8004.519.1 at 474.126 kb on + strand, within Xcc-8004.519.1 at 474.126 kb on + strand, within Xcc-8004.519.1 at 474.126 kb on + strand, within Xcc-8004.519.1 at 474.127 kb on - strand, within Xcc-8004.519.1 at 474.127 kb on - strand, within Xcc-8004.519.1 at 474.127 kb on - strand, within Xcc-8004.519.1 at 474.127 kb on - strand, within Xcc-8004.519.1 at 474.137 kb on + strand, within Xcc-8004.519.1 at 474.138 kb on - strand, within Xcc-8004.519.1 at 474.238 kb on - strand, within Xcc-8004.519.1 at 474.248 kb on + strand, within Xcc-8004.519.1 at 474.275 kb on + strand, within Xcc-8004.519.1 at 474.326 kb on + strand, within Xcc-8004.519.1 at 474.438 kb on - strand, within Xcc-8004.519.1 at 474.476 kb on + strand, within Xcc-8004.519.1 at 474.477 kb on - strand, within Xcc-8004.519.1 at 474.477 kb on - strand, within Xcc-8004.519.1 at 474.477 kb on - strand, within Xcc-8004.519.1 at 474.605 kb on + strand, within Xcc-8004.519.1 at 474.605 kb on + strand, within Xcc-8004.519.1 at 474.606 kb on - strand, within Xcc-8004.519.1 at 474.606 kb on - strand, within Xcc-8004.519.1 at 474.606 kb on - strand, within Xcc-8004.519.1 at 474.671 kb on + strand, within Xcc-8004.519.1 at 474.689 kb on - strand, within Xcc-8004.519.1 at 474.689 kb on - strand, within Xcc-8004.519.1 at 474.752 kb on + strand, within Xcc-8004.519.1 at 474.753 kb on - strand, within Xcc-8004.519.1 at 474.808 kb on + strand, within Xcc-8004.519.1 at 474.809 kb on - strand, within Xcc-8004.519.1 at 474.971 kb on + strand, within Xcc-8004.519.1 at 474.972 kb on - strand, within Xcc-8004.519.1 at 474.972 kb on - strand, within Xcc-8004.519.1 at 475.037 kb on + strand, within Xcc-8004.519.1 at 475.037 kb on + strand, within Xcc-8004.519.1 at 475.134 kb on - strand, within Xcc-8004.519.1 at 475.187 kb on + strand, within Xcc-8004.519.1 at 475.188 kb on - strand, within Xcc-8004.519.1 at 475.188 kb on - strand, within Xcc-8004.519.1 at 475.331 kb on + strand, within Xcc-8004.519.1 at 475.331 kb on + strand, within Xcc-8004.519.1 at 475.331 kb on + strand, within Xcc-8004.519.1 at 475.332 kb on - strand, within Xcc-8004.519.1 at 475.479 kb on - strand at 475.479 kb on - strand at 475.670 kb on + strand at 475.670 kb on + strand at 475.670 kb on + strand at 475.670 kb on + strand at 475.671 kb on - strand at 475.671 kb on - strand at 475.671 kb on - strand at 475.673 kb on - strand at 475.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 472,150 - Xcc-8004.517.1 0.59 +0.4 472,225 + Xcc-8004.517.1 0.77 +0.3 472,250 + Xcc-8004.517.1 0.83 +0.5 472,250 + Xcc-8004.517.1 0.83 +0.5 472,251 - Xcc-8004.517.1 0.83 -0.1 472,251 - Xcc-8004.517.1 0.83 -2.5 472,251 - Xcc-8004.517.1 0.83 -1.4 472,251 - Xcc-8004.517.1 0.83 +0.5 472,301 + +0.9 472,301 + +0.6 472,302 - -0.0 472,302 - +0.0 472,392 + +0.2 472,521 - +0.3 472,523 + +0.6 472,524 - +0.3 472,595 + -2.1 472,595 + +0.5 472,595 + -1.1 472,595 + -0.0 472,595 + +0.2 472,596 - +0.0 472,628 + +0.0 472,628 + +0.1 472,628 + +0.3 472,628 + +1.0 472,628 + -0.0 472,628 + -0.8 472,628 + -0.3 472,628 + -0.4 472,628 + +0.7 472,628 + +1.0 472,628 + -0.7 472,628 + -0.5 472,629 - -0.5 472,629 - -1.4 472,629 - +0.0 472,629 - -0.1 472,629 - +0.3 472,629 - +0.7 472,629 - -0.2 472,629 - -0.5 472,629 - -0.2 472,635 + +0.2 472,635 + -0.2 472,635 + -1.0 472,635 + -0.4 472,636 - -0.6 472,655 + -1.2 472,656 - +1.5 472,661 + -1.5 472,661 + -0.8 472,662 - +1.8 472,737 + -0.4 472,737 + -0.2 472,738 - -0.6 472,738 - -0.0 472,792 + -0.3 472,792 + -0.2 472,792 + -0.5 472,952 + Xcc-8004.518.1 0.24 -1.1 472,969 - Xcc-8004.518.1 0.33 +0.2 472,972 + Xcc-8004.518.1 0.34 +0.1 473,020 + Xcc-8004.518.1 0.59 +0.5 473,020 + Xcc-8004.518.1 0.59 -0.4 473,021 - Xcc-8004.518.1 0.60 -1.1 473,021 - Xcc-8004.518.1 0.60 -0.6 473,050 + Xcc-8004.518.1 0.75 +0.1 473,050 + Xcc-8004.518.1 0.75 -0.6 473,050 + Xcc-8004.518.1 0.75 -0.4 473,050 + Xcc-8004.518.1 0.75 +0.6 473,051 - Xcc-8004.518.1 0.76 -0.1 473,051 - Xcc-8004.518.1 0.76 -0.7 473,051 - Xcc-8004.518.1 0.76 -0.4 473,051 - Xcc-8004.518.1 0.76 +0.4 473,051 - Xcc-8004.518.1 0.76 -0.4 473,051 - Xcc-8004.518.1 0.76 -0.6 473,072 + Xcc-8004.518.1 0.86 +0.8 473,072 + Xcc-8004.518.1 0.86 -0.1 473,073 - Xcc-8004.518.1 0.87 +0.1 473,131 + -1.6 473,132 - -0.2 473,229 + +0.2 473,230 - +0.5 473,238 - -1.6 473,251 + +0.8 473,251 + -0.4 473,251 + +0.4 473,252 - -0.8 473,252 - -1.1 473,252 - -0.4 473,314 + +0.3 473,314 + +1.1 473,315 - +0.5 473,423 + Xcc-8004.519.1 0.12 -0.1 473,424 - Xcc-8004.519.1 0.12 -1.5 473,442 + Xcc-8004.519.1 0.12 -0.9 473,621 + Xcc-8004.519.1 0.19 +0.8 473,621 + Xcc-8004.519.1 0.19 +0.1 473,622 - Xcc-8004.519.1 0.19 +0.4 473,622 - Xcc-8004.519.1 0.19 +0.6 473,696 + Xcc-8004.519.1 0.22 -1.9 473,696 + Xcc-8004.519.1 0.22 -0.0 473,696 + Xcc-8004.519.1 0.22 -0.6 473,696 + Xcc-8004.519.1 0.22 -0.9 473,696 + Xcc-8004.519.1 0.22 +0.8 473,696 + Xcc-8004.519.1 0.22 -0.4 473,696 + Xcc-8004.519.1 0.22 -0.1 473,696 + Xcc-8004.519.1 0.22 +0.4 473,696 + Xcc-8004.519.1 0.22 +1.2 473,697 - Xcc-8004.519.1 0.22 +0.4 473,697 - Xcc-8004.519.1 0.22 +0.5 473,697 - Xcc-8004.519.1 0.22 -1.5 473,697 - Xcc-8004.519.1 0.22 +0.8 473,697 - Xcc-8004.519.1 0.22 +0.5 473,697 - Xcc-8004.519.1 0.22 -0.3 473,705 - Xcc-8004.519.1 0.22 -1.1 473,894 + Xcc-8004.519.1 0.30 -0.1 473,894 + Xcc-8004.519.1 0.30 -0.4 473,894 + Xcc-8004.519.1 0.30 +1.1 473,895 - Xcc-8004.519.1 0.30 +0.6 473,895 - Xcc-8004.519.1 0.30 -0.6 473,895 - Xcc-8004.519.1 0.30 +0.2 473,895 - Xcc-8004.519.1 0.30 +0.6 474,011 + Xcc-8004.519.1 0.34 +1.8 474,012 - Xcc-8004.519.1 0.34 -0.5 474,019 - Xcc-8004.519.1 0.34 +0.5 474,019 - Xcc-8004.519.1 0.34 -0.1 474,019 - Xcc-8004.519.1 0.34 -0.0 474,050 + Xcc-8004.519.1 0.36 -0.1 474,050 + Xcc-8004.519.1 0.36 +0.6 474,092 + Xcc-8004.519.1 0.37 -0.6 474,093 - Xcc-8004.519.1 0.37 -0.8 474,093 - Xcc-8004.519.1 0.37 +1.2 474,093 - Xcc-8004.519.1 0.37 +0.5 474,093 - Xcc-8004.519.1 0.37 -0.6 474,093 - Xcc-8004.519.1 0.37 +0.4 474,093 - Xcc-8004.519.1 0.37 +0.7 474,093 - Xcc-8004.519.1 0.37 +0.2 474,093 - Xcc-8004.519.1 0.37 -0.1 474,093 - Xcc-8004.519.1 0.37 -1.1 474,126 + Xcc-8004.519.1 0.39 +0.3 474,126 + Xcc-8004.519.1 0.39 +0.3 474,126 + Xcc-8004.519.1 0.39 +1.3 474,126 + Xcc-8004.519.1 0.39 +1.2 474,127 - Xcc-8004.519.1 0.39 -0.9 474,127 - Xcc-8004.519.1 0.39 +0.6 474,127 - Xcc-8004.519.1 0.39 -0.5 474,127 - Xcc-8004.519.1 0.39 -1.2 474,137 + Xcc-8004.519.1 0.39 -0.0 474,138 - Xcc-8004.519.1 0.39 +0.5 474,238 - Xcc-8004.519.1 0.43 +1.0 474,248 + Xcc-8004.519.1 0.43 +0.0 474,275 + Xcc-8004.519.1 0.44 +0.6 474,326 + Xcc-8004.519.1 0.46 -0.9 474,438 - Xcc-8004.519.1 0.50 -0.9 474,476 + Xcc-8004.519.1 0.52 -0.1 474,477 - Xcc-8004.519.1 0.52 -0.5 474,477 - Xcc-8004.519.1 0.52 +0.0 474,477 - Xcc-8004.519.1 0.52 -0.3 474,605 + Xcc-8004.519.1 0.57 -0.3 474,605 + Xcc-8004.519.1 0.57 +0.2 474,606 - Xcc-8004.519.1 0.57 -1.0 474,606 - Xcc-8004.519.1 0.57 -1.0 474,606 - Xcc-8004.519.1 0.57 +0.9 474,671 + Xcc-8004.519.1 0.59 -0.5 474,689 - Xcc-8004.519.1 0.60 -0.4 474,689 - Xcc-8004.519.1 0.60 -0.2 474,752 + Xcc-8004.519.1 0.63 -0.0 474,753 - Xcc-8004.519.1 0.63 +0.4 474,808 + Xcc-8004.519.1 0.65 +0.2 474,809 - Xcc-8004.519.1 0.65 -0.3 474,971 + Xcc-8004.519.1 0.71 +0.7 474,972 - Xcc-8004.519.1 0.71 +0.6 474,972 - Xcc-8004.519.1 0.71 -0.0 475,037 + Xcc-8004.519.1 0.74 -0.9 475,037 + Xcc-8004.519.1 0.74 -1.8 475,134 - Xcc-8004.519.1 0.77 -0.2 475,187 + Xcc-8004.519.1 0.79 +0.4 475,188 - Xcc-8004.519.1 0.79 -0.1 475,188 - Xcc-8004.519.1 0.79 -0.8 475,331 + Xcc-8004.519.1 0.85 -0.9 475,331 + Xcc-8004.519.1 0.85 +0.1 475,331 + Xcc-8004.519.1 0.85 +0.6 475,332 - Xcc-8004.519.1 0.85 +0.2 475,479 - -1.2 475,479 - -0.4 475,670 + +0.0 475,670 + -0.9 475,670 + +0.2 475,670 + +1.5 475,671 - +0.2 475,671 - -0.1 475,671 - -0.6 475,673 - +0.3 475,715 - +0.9
Or see this region's nucleotide sequence