Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5185.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
4,919,333	+		Xcc-8004.5184.1	0.42	+0.2
4,919,333	+		Xcc-8004.5184.1	0.42	+0.6
4,919,334	-		Xcc-8004.5184.1	0.42	+0.1
4,919,334	-		Xcc-8004.5184.1	0.42	+0.8
4,919,336	+		Xcc-8004.5184.1	0.42	-1.4
4,919,337	-		Xcc-8004.5184.1	0.42	-0.3
4,919,337	-		Xcc-8004.5184.1	0.42	-0.5
4,919,345	+		Xcc-8004.5184.1	0.43	-0.1
4,919,345	+		Xcc-8004.5184.1	0.43	-1.5
4,919,346	-		Xcc-8004.5184.1	0.43	-0.0
4,919,346	-		Xcc-8004.5184.1	0.43	+0.3
4,919,346	-		Xcc-8004.5184.1	0.43	-0.1
4,919,349	-		Xcc-8004.5184.1	0.43	-0.5
4,919,349	-		Xcc-8004.5184.1	0.43	-0.6
4,919,543	+		Xcc-8004.5184.1	0.57	+0.6
4,919,618	+		Xcc-8004.5184.1	0.63	-0.2
4,919,618	+		Xcc-8004.5184.1	0.63	+0.3
4,919,741	+		Xcc-8004.5184.1	0.72	-0.6
4,919,742	-		Xcc-8004.5184.1	0.72	-0.9
4,919,816	+		Xcc-8004.5184.1	0.77	+0.2
4,919,817	-		Xcc-8004.5184.1	0.77	-0.6
4,919,865	-		Xcc-8004.5184.1	0.81	+0.7
4,919,865	-		Xcc-8004.5184.1	0.81	+0.6
4,919,865	-		Xcc-8004.5184.1	0.81	+0.3
4,919,865	-		Xcc-8004.5184.1	0.81	+0.5
4,919,865	-		Xcc-8004.5184.1	0.81	-2.3
4,919,983	+		Xcc-8004.5184.1	0.89	+0.0
4,920,215	+				+2.0
4,920,215	+				-0.6
4,920,216	-				-0.3
4,920,216	-				-1.2
4,920,277	+				-0.6
4,920,277	+				+0.5
4,920,277	+				+0.4
4,920,277	+				+0.6
4,920,278	-				+1.1
4,920,278	-				-0.1
4,920,278	-				-0.4
4,920,278	-				-0.3
4,920,278	-				-0.9
4,920,279	+				-0.3
4,920,279	+				+0.2
4,920,279	+				+0.5
4,920,279	+				-0.5
4,920,279	+				+0.3
4,920,279	+				-0.3
4,920,279	+				-1.8
4,920,280	-				-0.7
4,920,280	-				-0.5
4,920,280	-				-0.6
4,920,280	-				+0.6
4,920,280	-				+1.1
4,920,403	-		Xcc-8004.5185.1	0.21	+0.3
4,920,432	+		Xcc-8004.5185.1	0.27	-0.7
4,920,433	-		Xcc-8004.5185.1	0.27	-1.4
4,920,505	+		Xcc-8004.5185.1	0.40	-0.3
4,920,506	-		Xcc-8004.5185.1	0.40	-0.8
4,920,969	+				-0.5
4,920,970	-				+0.0
4,920,970	-				-1.0
4,920,991	+				+0.6
4,921,148	+				-1.7
4,921,148	+				+0.9
4,921,152	+		Xcc-8004.5186.1	0.11	-0.1
4,921,153	-		Xcc-8004.5186.1	0.11	-1.5
4,921,339	+		Xcc-8004.5186.1	0.67	+0.9
4,921,340	-		Xcc-8004.5186.1	0.67	-2.2
4,921,340	-		Xcc-8004.5186.1	0.67	-0.1
4,921,340	-		Xcc-8004.5186.1	0.67	-0.4
4,921,348	+		Xcc-8004.5186.1	0.69	-0.8
4,921,401	+		Xcc-8004.5186.1	0.85	+1.2
4,921,448	+				-0.7
4,921,483	+				+0.7
4,921,484	-				+0.4
4,921,486	+				+0.3
4,921,486	+				-0.3
4,921,487	-				-1.1
4,921,487	-				-1.5
4,921,487	-				+0.7
4,921,816	-		Xcc-8004.5188.1	0.11	-0.4
4,921,816	-		Xcc-8004.5188.1	0.11	+0.5
4,921,816	-		Xcc-8004.5188.1	0.11	+0.5