Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5133.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.5132.1 and Xcc-8004.5133.1 are separated by 55 nucleotidesXcc-8004.5133.1 and Xcc-8004.5134.1 are separated by 222 nucleotides Xcc-8004.5132.1: Xcc-8004.5132.1 - Heavy metal RND efflux outer membrane protein, CzcC family, at 4,864,559 to 4,865,824 Xcc-8004.5132.1 Xcc-8004.5133.1: Xcc-8004.5133.1 - FIG01212313: hypothetical protein, at 4,865,880 to 4,866,263 Xcc-8004.5133.1 Xcc-8004.5134.1: Xcc-8004.5134.1 - FIG01113058: hypothetical protein, at 4,866,486 to 4,868,303 Xcc-8004.5134.1 Position (kb) 4865 4866 4867Strain fitness (log2 ratio) -3 -2 -1 0 1at 4865.760 kb on - strandat 4865.760 kb on - strandat 4865.760 kb on - strandat 4866.025 kb on + strand, within Xcc-8004.5133.1at 4866.025 kb on + strand, within Xcc-8004.5133.1at 4866.277 kb on + strandat 4866.277 kb on + strandat 4866.277 kb on + strandat 4866.277 kb on + strandat 4866.277 kb on + strandat 4866.278 kb on - strandat 4866.278 kb on - strandat 4866.278 kb on - strandat 4866.278 kb on - strandat 4866.279 kb on + strandat 4866.280 kb on - strandat 4866.280 kb on - strandat 4866.280 kb on - strandat 4866.295 kb on + strandat 4866.333 kb on + strandat 4866.333 kb on + strandat 4866.333 kb on + strandat 4866.334 kb on - strandat 4866.334 kb on - strandat 4866.334 kb on - strandat 4866.419 kb on + strandat 4866.419 kb on + strandat 4866.419 kb on + strandat 4866.420 kb on - strandat 4866.420 kb on - strandat 4866.420 kb on - strandat 4866.420 kb on - strandat 4866.420 kb on - strandat 4866.420 kb on - strandat 4866.601 kb on - strandat 4866.601 kb on - strandat 4866.601 kb on - strandat 4866.601 kb on - strandat 4866.694 kb on + strand, within Xcc-8004.5134.1at 4866.694 kb on + strand, within Xcc-8004.5134.1at 4866.694 kb on + strand, within Xcc-8004.5134.1at 4866.694 kb on + strand, within Xcc-8004.5134.1at 4866.695 kb on - strand, within Xcc-8004.5134.1at 4866.724 kb on + strand, within Xcc-8004.5134.1at 4866.724 kb on + strand, within Xcc-8004.5134.1at 4866.724 kb on + strand, within Xcc-8004.5134.1at 4866.724 kb on + strand, within Xcc-8004.5134.1at 4866.724 kb on + strand, within Xcc-8004.5134.1at 4866.724 kb on + strand, within Xcc-8004.5134.1at 4866.724 kb on + strand, within Xcc-8004.5134.1at 4866.724 kb on + strand, within Xcc-8004.5134.1at 4866.724 kb on + strand, within Xcc-8004.5134.1at 4866.725 kb on - strand, within Xcc-8004.5134.1at 4866.725 kb on - strand, within Xcc-8004.5134.1at 4866.725 kb on - strand, within Xcc-8004.5134.1at 4866.725 kb on - strand, within Xcc-8004.5134.1at 4866.781 kb on + strand, within Xcc-8004.5134.1at 4866.781 kb on + strand, within Xcc-8004.5134.1at 4866.782 kb on - strand, within Xcc-8004.5134.1at 4866.782 kb on - strand, within Xcc-8004.5134.1at 4866.782 kb on - strand, within Xcc-8004.5134.1at 4866.782 kb on - strand, within Xcc-8004.5134.1at 4866.862 kb on + strand, within Xcc-8004.5134.1at 4866.862 kb on + strand, within Xcc-8004.5134.1at 4866.862 kb on + strand, within Xcc-8004.5134.1at 4866.862 kb on + strand, within Xcc-8004.5134.1at 4866.862 kb on + strand, within Xcc-8004.5134.1at 4866.862 kb on + strand, within Xcc-8004.5134.1at 4866.862 kb on + strand, within Xcc-8004.5134.1at 4866.863 kb on - strand, within Xcc-8004.5134.1at 4866.863 kb on - strand, within Xcc-8004.5134.1at 4866.863 kb on - strand, within Xcc-8004.5134.1at 4866.886 kb on + strand, within Xcc-8004.5134.1at 4866.898 kb on + strand, within Xcc-8004.5134.1at 4866.898 kb on + strand, within Xcc-8004.5134.1at 4866.898 kb on + strand, within Xcc-8004.5134.1at 4866.898 kb on + strand, within Xcc-8004.5134.1at 4866.898 kb on + strand, within Xcc-8004.5134.1at 4866.899 kb on - strand, within Xcc-8004.5134.1at 4866.899 kb on - strand, within Xcc-8004.5134.1at 4866.899 kb on - strand, within Xcc-8004.5134.1at 4866.899 kb on - strand, within Xcc-8004.5134.1at 4866.899 kb on - strand, within Xcc-8004.5134.1at 4866.899 kb on - strand, within Xcc-8004.5134.1at 4866.931 kb on + strand, within Xcc-8004.5134.1at 4866.931 kb on + strand, within Xcc-8004.5134.1at 4866.931 kb on + strand, within Xcc-8004.5134.1at 4866.931 kb on + strand, within Xcc-8004.5134.1at 4866.932 kb on - strand, within Xcc-8004.5134.1at 4866.932 kb on - strand, within Xcc-8004.5134.1at 4866.932 kb on - strand, within Xcc-8004.5134.1at 4866.932 kb on - strand, within Xcc-8004.5134.1at 4866.932 kb on - strand, within Xcc-8004.5134.1at 4866.932 kb on - strand, within Xcc-8004.5134.1at 4866.964 kb on + strand, within Xcc-8004.5134.1at 4866.964 kb on + strand, within Xcc-8004.5134.1at 4866.965 kb on - strand, within Xcc-8004.5134.1at 4866.965 kb on - strand, within Xcc-8004.5134.1at 4866.965 kb on - strand, within Xcc-8004.5134.1at 4866.965 kb on - strand, within Xcc-8004.5134.1at 4866.965 kb on - strand, within Xcc-8004.5134.1at 4867.069 kb on + strand, within Xcc-8004.5134.1at 4867.069 kb on + strand, within Xcc-8004.5134.1at 4867.069 kb on + strand, within Xcc-8004.5134.1at 4867.070 kb on - strand, within Xcc-8004.5134.1at 4867.070 kb on - strand, within Xcc-8004.5134.1at 4867.070 kb on - strand, within Xcc-8004.5134.1at 4867.093 kb on + strand, within Xcc-8004.5134.1at 4867.093 kb on + strand, within Xcc-8004.5134.1at 4867.093 kb on + strand, within Xcc-8004.5134.1at 4867.093 kb on + strand, within Xcc-8004.5134.1at 4867.093 kb on + strand, within Xcc-8004.5134.1at 4867.093 kb on + strand, within Xcc-8004.5134.1at 4867.093 kb on + strand, within Xcc-8004.5134.1at 4867.094 kb on - strand, within Xcc-8004.5134.1at 4867.094 kb on - strand, within Xcc-8004.5134.1at 4867.094 kb on - strand, within Xcc-8004.5134.1at 4867.094 kb on - strand, within Xcc-8004.5134.1at 4867.094 kb on - strand, within Xcc-8004.5134.1at 4867.108 kb on + strand, within Xcc-8004.5134.1at 4867.108 kb on + strand, within Xcc-8004.5134.1at 4867.108 kb on + strand, within Xcc-8004.5134.1at 4867.108 kb on + strand, within Xcc-8004.5134.1at 4867.108 kb on + strand, within Xcc-8004.5134.1at 4867.108 kb on + strand, within Xcc-8004.5134.1at 4867.108 kb on + strand, within Xcc-8004.5134.1at 4867.109 kb on - strand, within Xcc-8004.5134.1at 4867.109 kb on - strand, within Xcc-8004.5134.1at 4867.109 kb on - strand, within Xcc-8004.5134.1at 4867.109 kb on - strand, within Xcc-8004.5134.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
remove
4,865,760 - -0.4
4,865,760 - -0.6
4,865,760 - +0.2
4,866,025 + Xcc-8004.5133.1 0.38 -1.0
4,866,025 + Xcc-8004.5133.1 0.38 -1.2
4,866,277 + -0.3
4,866,277 + +0.5
4,866,277 + -0.9
4,866,277 + +0.2
4,866,277 + +0.8
4,866,278 - +0.7
4,866,278 - +0.7
4,866,278 - -1.4
4,866,278 - -0.4
4,866,279 + -1.2
4,866,280 - -0.6
4,866,280 - -1.2
4,866,280 - -0.1
4,866,295 + +0.8
4,866,333 + -0.8
4,866,333 + +0.6
4,866,333 + +0.1
4,866,334 - -0.4
4,866,334 - +0.3
4,866,334 - +0.4
4,866,419 + +0.2
4,866,419 + +0.1
4,866,419 + +0.0
4,866,420 - +0.8
4,866,420 - +0.2
4,866,420 - +0.5
4,866,420 - +0.4
4,866,420 - -0.3
4,866,420 - -0.9
4,866,601 - +0.8
4,866,601 - -0.8
4,866,601 - +0.1
4,866,601 - +0.4
4,866,694 + Xcc-8004.5134.1 0.11 +0.5
4,866,694 + Xcc-8004.5134.1 0.11 +0.6
4,866,694 + Xcc-8004.5134.1 0.11 +0.6
4,866,694 + Xcc-8004.5134.1 0.11 +1.5
4,866,695 - Xcc-8004.5134.1 0.11 -0.3
4,866,724 + Xcc-8004.5134.1 0.13 +0.5
4,866,724 + Xcc-8004.5134.1 0.13 +0.3
4,866,724 + Xcc-8004.5134.1 0.13 -0.5
4,866,724 + Xcc-8004.5134.1 0.13 +0.3
4,866,724 + Xcc-8004.5134.1 0.13 +1.6
4,866,724 + Xcc-8004.5134.1 0.13 -0.3
4,866,724 + Xcc-8004.5134.1 0.13 -1.0
4,866,724 + Xcc-8004.5134.1 0.13 +0.1
4,866,724 + Xcc-8004.5134.1 0.13 -0.2
4,866,725 - Xcc-8004.5134.1 0.13 +0.7
4,866,725 - Xcc-8004.5134.1 0.13 +0.3
4,866,725 - Xcc-8004.5134.1 0.13 +1.6
4,866,725 - Xcc-8004.5134.1 0.13 -0.6
4,866,781 + Xcc-8004.5134.1 0.16 -0.1
4,866,781 + Xcc-8004.5134.1 0.16 -1.0
4,866,782 - Xcc-8004.5134.1 0.16 +0.2
4,866,782 - Xcc-8004.5134.1 0.16 -0.0
4,866,782 - Xcc-8004.5134.1 0.16 +0.2
4,866,782 - Xcc-8004.5134.1 0.16 +1.1
4,866,862 + Xcc-8004.5134.1 0.21 +0.0
4,866,862 + Xcc-8004.5134.1 0.21 +0.5
4,866,862 + Xcc-8004.5134.1 0.21 -1.8
4,866,862 + Xcc-8004.5134.1 0.21 +0.9
4,866,862 + Xcc-8004.5134.1 0.21 -2.1
4,866,862 + Xcc-8004.5134.1 0.21 +1.2
4,866,862 + Xcc-8004.5134.1 0.21 -0.0
4,866,863 - Xcc-8004.5134.1 0.21 +0.7
4,866,863 - Xcc-8004.5134.1 0.21 +1.5
4,866,863 - Xcc-8004.5134.1 0.21 +0.8
4,866,886 + Xcc-8004.5134.1 0.22 -1.2
4,866,898 + Xcc-8004.5134.1 0.23 -0.8
4,866,898 + Xcc-8004.5134.1 0.23 -0.8
4,866,898 + Xcc-8004.5134.1 0.23 +1.0
4,866,898 + Xcc-8004.5134.1 0.23 +0.5
4,866,898 + Xcc-8004.5134.1 0.23 -0.3
4,866,899 - Xcc-8004.5134.1 0.23 +0.5
4,866,899 - Xcc-8004.5134.1 0.23 -0.7
4,866,899 - Xcc-8004.5134.1 0.23 +0.2
4,866,899 - Xcc-8004.5134.1 0.23 +0.3
4,866,899 - Xcc-8004.5134.1 0.23 -0.2
4,866,899 - Xcc-8004.5134.1 0.23 +0.0
4,866,931 + Xcc-8004.5134.1 0.24 +0.5
4,866,931 + Xcc-8004.5134.1 0.24 +0.2
4,866,931 + Xcc-8004.5134.1 0.24 -0.5
4,866,931 + Xcc-8004.5134.1 0.24 -0.5
4,866,932 - Xcc-8004.5134.1 0.25 +0.5
4,866,932 - Xcc-8004.5134.1 0.25 -0.7
4,866,932 - Xcc-8004.5134.1 0.25 +0.7
4,866,932 - Xcc-8004.5134.1 0.25 +0.4
4,866,932 - Xcc-8004.5134.1 0.25 +0.3
4,866,932 - Xcc-8004.5134.1 0.25 -1.7
4,866,964 + Xcc-8004.5134.1 0.26 +1.3
4,866,964 + Xcc-8004.5134.1 0.26 +1.5
4,866,965 - Xcc-8004.5134.1 0.26 -1.1
4,866,965 - Xcc-8004.5134.1 0.26 +0.5
4,866,965 - Xcc-8004.5134.1 0.26 -0.0
4,866,965 - Xcc-8004.5134.1 0.26 +0.7
4,866,965 - Xcc-8004.5134.1 0.26 -0.7
4,867,069 + Xcc-8004.5134.1 0.32 -1.0
4,867,069 + Xcc-8004.5134.1 0.32 -0.7
4,867,069 + Xcc-8004.5134.1 0.32 -0.1
4,867,070 - Xcc-8004.5134.1 0.32 +0.2
4,867,070 - Xcc-8004.5134.1 0.32 -0.2
4,867,070 - Xcc-8004.5134.1 0.32 -1.0
4,867,093 + Xcc-8004.5134.1 0.33 +0.7
4,867,093 + Xcc-8004.5134.1 0.33 -0.8
4,867,093 + Xcc-8004.5134.1 0.33 -0.1
4,867,093 + Xcc-8004.5134.1 0.33 -0.6
4,867,093 + Xcc-8004.5134.1 0.33 -2.9
4,867,093 + Xcc-8004.5134.1 0.33 -0.0
4,867,093 + Xcc-8004.5134.1 0.33 -0.6
4,867,094 - Xcc-8004.5134.1 0.33 +0.8
4,867,094 - Xcc-8004.5134.1 0.33 -0.3
4,867,094 - Xcc-8004.5134.1 0.33 +0.4
4,867,094 - Xcc-8004.5134.1 0.33 +1.2
4,867,094 - Xcc-8004.5134.1 0.33 -1.2
4,867,108 + Xcc-8004.5134.1 0.34 -0.1
4,867,108 + Xcc-8004.5134.1 0.34 +0.2
4,867,108 + Xcc-8004.5134.1 0.34 -0.5
4,867,108 + Xcc-8004.5134.1 0.34 -0.8
4,867,108 + Xcc-8004.5134.1 0.34 +0.6
4,867,108 + Xcc-8004.5134.1 0.34 +0.3
4,867,108 + Xcc-8004.5134.1 0.34 -0.1
4,867,109 - Xcc-8004.5134.1 0.34 -0.1
4,867,109 - Xcc-8004.5134.1 0.34 +1.1
4,867,109 - Xcc-8004.5134.1 0.34 +0.2
4,867,109 - Xcc-8004.5134.1 0.34 -0.4

Or see this region's nucleotide sequence