Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5101.1 and Xcc-8004.5105.1 are separated by 550 nucleotides Xcc-8004.5105.1 and Xcc-8004.5106.1 are separated by 77 nucleotides Xcc-8004.5106.1 and Xcc-8004.5107.1 are separated by 268 nucleotides Xcc-8004.5107.1 and Xcc-8004.5108.1 overlap by 52 nucleotides
Xcc-8004.5101.1: Xcc-8004.5101.1 - Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3), at 4,838,663 to 4,839,562
Xcc-8004.5101.1
Xcc-8004.5105.1: Xcc-8004.5105.1 - DNA polymerase I (EC 2.7.7.7), at 4,840,113 to 4,842,896
Xcc-8004.5105.1
Xcc-8004.5106.1: Xcc-8004.5106.1 - FIG01210192: hypothetical protein, at 4,842,974 to 4,843,255
Xcc-8004.5106.1
Xcc-8004.5107.1: Xcc-8004.5107.1 - Uncharacterized protein ImpA, at 4,843,524 to 4,843,643
Xcc-8004.5107.1
Xcc-8004.5108.1: Xcc-8004.5108.1 - Uncharacterized protein ImpA, at 4,843,592 to 4,844,344
Xcc-8004.5108.1
Position (kb) 4840
4841
4842
4843 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4839.609 kb on - strand at 4839.609 kb on - strand at 4839.675 kb on + strand at 4839.675 kb on + strand at 4839.675 kb on + strand at 4839.675 kb on + strand at 4839.675 kb on + strand at 4839.676 kb on - strand at 4839.676 kb on - strand at 4839.676 kb on - strand at 4839.676 kb on - strand at 4839.727 kb on + strand at 4839.727 kb on + strand at 4839.727 kb on + strand at 4839.727 kb on + strand at 4839.727 kb on + strand at 4839.728 kb on - strand at 4839.728 kb on - strand at 4839.728 kb on - strand at 4839.763 kb on - strand at 4839.769 kb on + strand at 4839.769 kb on + strand at 4839.769 kb on + strand at 4839.769 kb on + strand at 4839.770 kb on - strand at 4839.770 kb on - strand at 4839.795 kb on + strand at 4839.795 kb on + strand at 4839.795 kb on + strand at 4839.795 kb on + strand at 4839.795 kb on + strand at 4839.795 kb on + strand at 4839.795 kb on + strand at 4839.795 kb on + strand at 4839.796 kb on - strand at 4839.796 kb on - strand at 4839.796 kb on - strand at 4839.796 kb on - strand at 4839.796 kb on - strand at 4839.796 kb on - strand at 4839.796 kb on - strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.808 kb on + strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.809 kb on - strand at 4839.838 kb on + strand at 4839.838 kb on + strand at 4839.839 kb on - strand at 4839.968 kb on + strand at 4839.968 kb on + strand at 4839.968 kb on + strand at 4839.968 kb on + strand at 4839.968 kb on + strand at 4839.969 kb on - strand at 4839.970 kb on + strand at 4839.970 kb on + strand at 4839.970 kb on + strand at 4839.970 kb on + strand at 4839.970 kb on + strand at 4839.970 kb on + strand at 4839.970 kb on + strand at 4839.970 kb on + strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.971 kb on - strand at 4839.983 kb on + strand at 4839.984 kb on - strand at 4839.984 kb on - strand at 4840.021 kb on + strand at 4840.028 kb on + strand at 4840.035 kb on + strand at 4840.069 kb on + strand at 4840.070 kb on - strand at 4840.083 kb on + strand at 4840.092 kb on + strand at 4840.092 kb on + strand at 4840.092 kb on + strand at 4840.092 kb on + strand at 4840.093 kb on - strand at 4840.093 kb on - strand at 4840.093 kb on - strand at 4840.093 kb on - strand at 4840.134 kb on - strand at 4842.098 kb on - strand, within Xcc-8004.5105.1 at 4842.695 kb on - strand at 4842.886 kb on - strand at 4842.907 kb on + strand at 4842.907 kb on + strand at 4842.908 kb on - strand at 4842.908 kb on - strand at 4842.943 kb on - strand at 4843.109 kb on + strand, within Xcc-8004.5106.1 at 4843.166 kb on + strand, within Xcc-8004.5106.1 at 4843.166 kb on + strand, within Xcc-8004.5106.1 at 4843.166 kb on + strand, within Xcc-8004.5106.1 at 4843.166 kb on + strand, within Xcc-8004.5106.1 at 4843.166 kb on + strand, within Xcc-8004.5106.1 at 4843.166 kb on + strand, within Xcc-8004.5106.1 at 4843.167 kb on - strand, within Xcc-8004.5106.1 at 4843.167 kb on - strand, within Xcc-8004.5106.1 at 4843.167 kb on - strand, within Xcc-8004.5106.1 at 4843.167 kb on - strand, within Xcc-8004.5106.1 at 4843.175 kb on + strand, within Xcc-8004.5106.1 at 4843.175 kb on + strand, within Xcc-8004.5106.1 at 4843.176 kb on - strand, within Xcc-8004.5106.1 at 4843.199 kb on - strand, within Xcc-8004.5106.1 at 4843.199 kb on - strand, within Xcc-8004.5106.1 at 4843.199 kb on - strand, within Xcc-8004.5106.1 at 4843.232 kb on + strand at 4843.232 kb on + strand at 4843.232 kb on + strand at 4843.233 kb on - strand at 4843.233 kb on - strand at 4843.233 kb on - strand at 4843.233 kb on - strand at 4843.233 kb on - strand at 4843.233 kb on - strand at 4843.233 kb on - strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.244 kb on + strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.245 kb on - strand at 4843.246 kb on + strand at 4843.246 kb on + strand at 4843.246 kb on + strand at 4843.246 kb on + strand at 4843.246 kb on + strand at 4843.246 kb on + strand at 4843.247 kb on - strand at 4843.247 kb on - strand at 4843.247 kb on - strand at 4843.247 kb on - strand at 4843.247 kb on - strand at 4843.247 kb on - strand at 4843.296 kb on + strand at 4843.366 kb on + strand at 4843.366 kb on + strand at 4843.366 kb on + strand at 4843.366 kb on + strand at 4843.367 kb on - strand at 4843.367 kb on - strand at 4843.367 kb on - strand at 4843.367 kb on - strand at 4843.367 kb on - strand at 4843.367 kb on - strand at 4843.367 kb on - strand at 4843.507 kb on + strand at 4843.675 kb on + strand, within Xcc-8004.5108.1 at 4843.675 kb on + strand, within Xcc-8004.5108.1 at 4843.676 kb on - strand, within Xcc-8004.5108.1 at 4843.676 kb on - strand, within Xcc-8004.5108.1 at 4843.678 kb on + strand, within Xcc-8004.5108.1 at 4843.678 kb on + strand, within Xcc-8004.5108.1 at 4843.678 kb on + strand, within Xcc-8004.5108.1 at 4843.678 kb on + strand, within Xcc-8004.5108.1 at 4843.679 kb on - strand, within Xcc-8004.5108.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,839,609 - +0.8 4,839,609 - -0.3 4,839,675 + +0.7 4,839,675 + +1.0 4,839,675 + +0.9 4,839,675 + -1.0 4,839,675 + -0.1 4,839,676 - -0.0 4,839,676 - -0.7 4,839,676 - +0.4 4,839,676 - +1.7 4,839,727 + -1.1 4,839,727 + +0.9 4,839,727 + +0.2 4,839,727 + -1.1 4,839,727 + +1.1 4,839,728 - +0.4 4,839,728 - -0.5 4,839,728 - +0.6 4,839,763 - +0.1 4,839,769 + +0.6 4,839,769 + +0.8 4,839,769 + +0.0 4,839,769 + -0.4 4,839,770 - +0.6 4,839,770 - +0.7 4,839,795 + -1.0 4,839,795 + +0.1 4,839,795 + +0.1 4,839,795 + -0.6 4,839,795 + -0.7 4,839,795 + +0.9 4,839,795 + -0.4 4,839,795 + +0.2 4,839,796 - -1.4 4,839,796 - -0.0 4,839,796 - +0.4 4,839,796 - +0.5 4,839,796 - +0.5 4,839,796 - -1.0 4,839,796 - -0.1 4,839,808 + -0.1 4,839,808 + +0.4 4,839,808 + +0.4 4,839,808 + -0.1 4,839,808 + -1.5 4,839,808 + -0.3 4,839,808 + +0.6 4,839,808 + +0.9 4,839,808 + -0.1 4,839,808 + +0.7 4,839,808 + -0.7 4,839,808 + -0.0 4,839,808 + +0.9 4,839,808 + +0.2 4,839,808 + -1.3 4,839,809 - +0.8 4,839,809 - +0.8 4,839,809 - -0.1 4,839,809 - +1.0 4,839,809 - +0.5 4,839,809 - -0.9 4,839,809 - -0.5 4,839,809 - -0.0 4,839,809 - -0.3 4,839,809 - -0.3 4,839,809 - -0.5 4,839,809 - -0.9 4,839,809 - +0.0 4,839,809 - +0.8 4,839,809 - +0.3 4,839,809 - +0.2 4,839,809 - +0.5 4,839,809 - +1.1 4,839,809 - +0.3 4,839,809 - +1.1 4,839,809 - +0.5 4,839,809 - -0.6 4,839,809 - -0.1 4,839,809 - -0.2 4,839,809 - -0.2 4,839,809 - -0.3 4,839,809 - -0.6 4,839,809 - -0.1 4,839,809 - -0.3 4,839,809 - -0.6 4,839,809 - +0.3 4,839,838 + +0.8 4,839,838 + -0.4 4,839,839 - -0.5 4,839,968 + +0.4 4,839,968 + +0.8 4,839,968 + +0.4 4,839,968 + -0.9 4,839,968 + -0.8 4,839,969 - -0.0 4,839,970 + -2.3 4,839,970 + -0.4 4,839,970 + +1.2 4,839,970 + -1.1 4,839,970 + +0.2 4,839,970 + -1.0 4,839,970 + +0.7 4,839,970 + +0.1 4,839,971 - -1.3 4,839,971 - +0.9 4,839,971 - +1.8 4,839,971 - -0.1 4,839,971 - +0.2 4,839,971 - -0.7 4,839,971 - -0.6 4,839,971 - -0.0 4,839,971 - +0.6 4,839,971 - +2.5 4,839,971 - -0.4 4,839,971 - -0.5 4,839,971 - +0.3 4,839,971 - -0.2 4,839,971 - -0.7 4,839,971 - -2.7 4,839,971 - -1.5 4,839,971 - +0.9 4,839,971 - +0.4 4,839,971 - -0.1 4,839,983 + +0.7 4,839,984 - -0.8 4,839,984 - +1.7 4,840,021 + -2.5 4,840,028 + +0.1 4,840,035 + +0.2 4,840,069 + +1.1 4,840,070 - -0.1 4,840,083 + +0.9 4,840,092 + -1.0 4,840,092 + +0.1 4,840,092 + +0.4 4,840,092 + +1.3 4,840,093 - +0.5 4,840,093 - -1.1 4,840,093 - -2.5 4,840,093 - -0.4 4,840,134 - -1.0 4,842,098 - Xcc-8004.5105.1 0.71 +1.5 4,842,695 - +1.5 4,842,886 - -0.6 4,842,907 + +1.0 4,842,907 + +0.8 4,842,908 - -1.9 4,842,908 - +0.4 4,842,943 - +0.1 4,843,109 + Xcc-8004.5106.1 0.48 -1.5 4,843,166 + Xcc-8004.5106.1 0.68 -1.1 4,843,166 + Xcc-8004.5106.1 0.68 +0.7 4,843,166 + Xcc-8004.5106.1 0.68 +0.8 4,843,166 + Xcc-8004.5106.1 0.68 +0.9 4,843,166 + Xcc-8004.5106.1 0.68 -0.9 4,843,166 + Xcc-8004.5106.1 0.68 -0.4 4,843,167 - Xcc-8004.5106.1 0.68 -0.4 4,843,167 - Xcc-8004.5106.1 0.68 -0.5 4,843,167 - Xcc-8004.5106.1 0.68 +0.4 4,843,167 - Xcc-8004.5106.1 0.68 -0.7 4,843,175 + Xcc-8004.5106.1 0.71 -0.1 4,843,175 + Xcc-8004.5106.1 0.71 -0.4 4,843,176 - Xcc-8004.5106.1 0.72 -0.2 4,843,199 - Xcc-8004.5106.1 0.80 -1.5 4,843,199 - Xcc-8004.5106.1 0.80 -0.3 4,843,199 - Xcc-8004.5106.1 0.80 -1.1 4,843,232 + +0.7 4,843,232 + +1.0 4,843,232 + -0.2 4,843,233 - +0.6 4,843,233 - -0.1 4,843,233 - -0.2 4,843,233 - -1.1 4,843,233 - +0.3 4,843,233 - -1.2 4,843,233 - -0.8 4,843,244 + +1.0 4,843,244 + -0.6 4,843,244 + +0.9 4,843,244 + -0.1 4,843,244 + -1.4 4,843,244 + -0.5 4,843,244 + -1.0 4,843,244 + +0.7 4,843,244 + +0.8 4,843,244 + -1.6 4,843,244 + -0.6 4,843,244 + -1.1 4,843,244 + -0.6 4,843,244 + -0.3 4,843,244 + +0.1 4,843,244 + -1.6 4,843,244 + -0.6 4,843,244 + +0.7 4,843,244 + +1.1 4,843,244 + +0.1 4,843,244 + -0.3 4,843,244 + -0.0 4,843,244 + +1.1 4,843,244 + -2.9 4,843,245 - -0.9 4,843,245 - -0.3 4,843,245 - -0.8 4,843,245 - +0.1 4,843,245 - +0.1 4,843,245 - +0.2 4,843,245 - -1.0 4,843,245 - +0.7 4,843,245 - -0.4 4,843,245 - +0.3 4,843,245 - +1.2 4,843,245 - +0.3 4,843,245 - -0.7 4,843,245 - -1.2 4,843,245 - -0.4 4,843,246 + +1.5 4,843,246 + -0.1 4,843,246 + +0.1 4,843,246 + -0.6 4,843,246 + -1.0 4,843,246 + -0.1 4,843,247 - -0.5 4,843,247 - +0.0 4,843,247 - +0.0 4,843,247 - +0.1 4,843,247 - -0.1 4,843,247 - +0.5 4,843,296 + +0.3 4,843,366 + +1.7 4,843,366 + -0.2 4,843,366 + +0.6 4,843,366 + +0.1 4,843,367 - +1.5 4,843,367 - -1.1 4,843,367 - -0.5 4,843,367 - -0.2 4,843,367 - -0.2 4,843,367 - -0.2 4,843,367 - -0.9 4,843,507 + +0.5 4,843,675 + Xcc-8004.5108.1 0.11 -0.9 4,843,675 + Xcc-8004.5108.1 0.11 +0.9 4,843,676 - Xcc-8004.5108.1 0.11 -0.6 4,843,676 - Xcc-8004.5108.1 0.11 +0.0 4,843,678 + Xcc-8004.5108.1 0.11 +1.4 4,843,678 + Xcc-8004.5108.1 0.11 -0.3 4,843,678 + Xcc-8004.5108.1 0.11 -0.5 4,843,678 + Xcc-8004.5108.1 0.11 -0.4 4,843,679 - Xcc-8004.5108.1 0.12 -2.2
Or see this region's nucleotide sequence