Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5037.1 and Xcc-8004.5038.1 overlap by 4 nucleotides Xcc-8004.5038.1 and Xcc-8004.5039.1 are separated by 31 nucleotides Xcc-8004.5039.1 and Xcc-8004.5040.1 are separated by 66 nucleotides Xcc-8004.5040.1 and Xcc-8004.5041.1 overlap by 4 nucleotides Xcc-8004.5041.1 and Xcc-8004.5042.1 overlap by 41 nucleotides
Xcc-8004.5037.1: Xcc-8004.5037.1 - ABC-type Na+ efflux pump, permease component, at 4,778,004 to 4,779,197
Xcc-8004.5037.1
Xcc-8004.5038.1: Xcc-8004.5038.1 - ABC-type Na+ transport system, ATPase component, at 4,779,194 to 4,779,940
Xcc-8004.5038.1
Xcc-8004.5039.1: Xcc-8004.5039.1 - FIG032621: Hydrolase, alpha/beta hydrolase fold family, at 4,779,972 to 4,781,522
Xcc-8004.5039.1
Xcc-8004.5040.1: Xcc-8004.5040.1 - Transcriptional regulator, at 4,781,589 to 4,781,789
Xcc-8004.5040.1
Xcc-8004.5041.1: Xcc-8004.5041.1 - FIG01211213: hypothetical protein, at 4,781,786 to 4,782,373
Xcc-8004.5041.1
Xcc-8004.5042.1: Xcc-8004.5042.1 - hypothetical protein, at 4,782,333 to 4,782,518
Xcc-8004.5042.1
Position (kb) 4779
4780
4781
4782 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4779.148 kb on + strand at 4779.640 kb on - strand, within Xcc-8004.5038.1 at 4779.672 kb on + strand, within Xcc-8004.5038.1 at 4779.672 kb on + strand, within Xcc-8004.5038.1 at 4779.673 kb on - strand, within Xcc-8004.5038.1 at 4779.786 kb on + strand, within Xcc-8004.5038.1 at 4779.787 kb on - strand, within Xcc-8004.5038.1 at 4780.463 kb on - strand, within Xcc-8004.5039.1 at 4780.548 kb on + strand, within Xcc-8004.5039.1 at 4780.832 kb on - strand, within Xcc-8004.5039.1 at 4780.850 kb on + strand, within Xcc-8004.5039.1 at 4780.942 kb on + strand, within Xcc-8004.5039.1 at 4780.942 kb on + strand, within Xcc-8004.5039.1 at 4780.942 kb on + strand, within Xcc-8004.5039.1 at 4780.943 kb on - strand, within Xcc-8004.5039.1 at 4780.965 kb on + strand, within Xcc-8004.5039.1 at 4780.990 kb on + strand, within Xcc-8004.5039.1 at 4781.109 kb on + strand, within Xcc-8004.5039.1 at 4781.499 kb on + strand at 4781.499 kb on + strand at 4781.500 kb on - strand at 4781.507 kb on + strand at 4781.508 kb on - strand at 4781.677 kb on + strand, within Xcc-8004.5040.1 at 4781.793 kb on + strand at 4781.827 kb on - strand at 4781.827 kb on - strand at 4781.827 kb on - strand at 4781.919 kb on + strand, within Xcc-8004.5041.1 at 4781.919 kb on + strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4782.119 kb on + strand, within Xcc-8004.5041.1 at 4782.120 kb on - strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.153 kb on + strand, within Xcc-8004.5041.1 at 4782.247 kb on + strand, within Xcc-8004.5041.1 at 4782.270 kb on + strand, within Xcc-8004.5041.1 at 4782.271 kb on - strand, within Xcc-8004.5041.1 at 4782.271 kb on - strand, within Xcc-8004.5041.1 at 4782.297 kb on + strand, within Xcc-8004.5041.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,779,148 + +0.9 4,779,640 - Xcc-8004.5038.1 0.60 -0.1 4,779,672 + Xcc-8004.5038.1 0.64 -0.2 4,779,672 + Xcc-8004.5038.1 0.64 -0.1 4,779,673 - Xcc-8004.5038.1 0.64 +0.4 4,779,786 + Xcc-8004.5038.1 0.79 +0.4 4,779,787 - Xcc-8004.5038.1 0.79 +0.8 4,780,463 - Xcc-8004.5039.1 0.32 +0.3 4,780,548 + Xcc-8004.5039.1 0.37 -0.7 4,780,832 - Xcc-8004.5039.1 0.55 +0.3 4,780,850 + Xcc-8004.5039.1 0.57 +0.5 4,780,942 + Xcc-8004.5039.1 0.63 -0.3 4,780,942 + Xcc-8004.5039.1 0.63 -2.3 4,780,942 + Xcc-8004.5039.1 0.63 -0.6 4,780,943 - Xcc-8004.5039.1 0.63 -3.4 4,780,965 + Xcc-8004.5039.1 0.64 -0.4 4,780,990 + Xcc-8004.5039.1 0.66 -1.0 4,781,109 + Xcc-8004.5039.1 0.73 -0.3 4,781,499 + +0.1 4,781,499 + -0.2 4,781,500 - -0.5 4,781,507 + +0.9 4,781,508 - -0.3 4,781,677 + Xcc-8004.5040.1 0.44 -0.9 4,781,793 + +0.5 4,781,827 - -0.3 4,781,827 - -0.5 4,781,827 - -1.1 4,781,919 + Xcc-8004.5041.1 0.23 -0.9 4,781,919 + Xcc-8004.5041.1 0.23 +0.5 4,781,920 - Xcc-8004.5041.1 0.23 -1.7 4,781,920 - Xcc-8004.5041.1 0.23 -1.3 4,781,920 - Xcc-8004.5041.1 0.23 +0.1 4,781,920 - Xcc-8004.5041.1 0.23 -1.1 4,781,920 - Xcc-8004.5041.1 0.23 +0.1 4,781,920 - Xcc-8004.5041.1 0.23 +0.6 4,781,920 - Xcc-8004.5041.1 0.23 +1.1 4,782,119 + Xcc-8004.5041.1 0.57 +0.5 4,782,120 - Xcc-8004.5041.1 0.57 -0.0 4,782,123 + Xcc-8004.5041.1 0.57 -1.8 4,782,123 + Xcc-8004.5041.1 0.57 +0.2 4,782,123 + Xcc-8004.5041.1 0.57 -1.1 4,782,123 + Xcc-8004.5041.1 0.57 +1.2 4,782,123 + Xcc-8004.5041.1 0.57 +0.1 4,782,123 + Xcc-8004.5041.1 0.57 +0.5 4,782,123 + Xcc-8004.5041.1 0.57 -0.3 4,782,124 - Xcc-8004.5041.1 0.57 -0.6 4,782,124 - Xcc-8004.5041.1 0.57 -1.3 4,782,124 - Xcc-8004.5041.1 0.57 +0.9 4,782,124 - Xcc-8004.5041.1 0.57 +0.5 4,782,124 - Xcc-8004.5041.1 0.57 +0.3 4,782,124 - Xcc-8004.5041.1 0.57 -1.2 4,782,124 - Xcc-8004.5041.1 0.57 -0.8 4,782,124 - Xcc-8004.5041.1 0.57 +0.6 4,782,124 - Xcc-8004.5041.1 0.57 -0.7 4,782,124 - Xcc-8004.5041.1 0.57 -0.2 4,782,153 + Xcc-8004.5041.1 0.62 -0.9 4,782,247 + Xcc-8004.5041.1 0.78 -2.0 4,782,270 + Xcc-8004.5041.1 0.82 +1.1 4,782,271 - Xcc-8004.5041.1 0.82 +2.1 4,782,271 - Xcc-8004.5041.1 0.82 -0.5 4,782,297 + Xcc-8004.5041.1 0.87 -1.0
Or see this region's nucleotide sequence