Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4942.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
4,696,492	+		Xcc-8004.4940.1	0.85	-0.8
4,696,493	-		Xcc-8004.4940.1	0.85	+0.6
4,696,493	-		Xcc-8004.4940.1	0.85	+0.6
4,696,636	-				+0.8
4,696,818	+		Xcc-8004.4941.1	0.20	+0.1
4,696,818	+		Xcc-8004.4941.1	0.20	+0.4
4,696,818	+		Xcc-8004.4941.1	0.20	+1.0
4,696,818	+		Xcc-8004.4941.1	0.20	+1.4
4,696,818	+		Xcc-8004.4941.1	0.20	-1.2
4,696,818	+		Xcc-8004.4941.1	0.20	-0.0
4,696,819	-		Xcc-8004.4941.1	0.20	+0.4
4,696,819	-		Xcc-8004.4941.1	0.20	+1.7
4,696,819	-		Xcc-8004.4941.1	0.20	-1.9
4,696,819	-		Xcc-8004.4941.1	0.20	-2.9
4,696,819	-		Xcc-8004.4941.1	0.20	+0.4
4,696,819	-		Xcc-8004.4941.1	0.20	-0.1
4,696,819	-		Xcc-8004.4941.1	0.20	-0.4
4,697,019	+		Xcc-8004.4941.1	0.53	+0.5
4,697,019	+		Xcc-8004.4941.1	0.53	-0.4
4,697,019	+		Xcc-8004.4941.1	0.53	+0.1
4,697,019	+		Xcc-8004.4941.1	0.53	+2.5
4,697,020	-		Xcc-8004.4941.1	0.54	-0.7
4,697,020	-		Xcc-8004.4941.1	0.54	-0.3
4,697,020	-		Xcc-8004.4941.1	0.54	-0.3
4,697,020	-		Xcc-8004.4941.1	0.54	+0.2
4,697,020	-		Xcc-8004.4941.1	0.54	-1.3
4,697,020	-		Xcc-8004.4941.1	0.54	-0.9
4,697,239	+				-0.3
4,697,239	+				-0.4
4,697,239	+				-0.8
4,697,239	+				-0.7
4,697,239	+				-0.9
4,697,239	+				+0.1
4,697,240	-				-0.7
4,697,240	-				-0.7
4,697,240	-				-1.3
4,697,240	-				+0.5
4,697,241	+				+0.6
4,697,241	+				-1.3
4,697,241	+				+0.3
4,697,241	+				+1.5
4,697,241	+				-0.6
4,697,241	+				-1.0
4,697,241	+				+0.8
4,697,241	+				-0.6
4,697,242	-				+0.7
4,697,242	-				+0.5
4,697,242	-				+1.1
4,697,242	-				+0.0
4,697,242	-				-0.1
4,697,242	-				+0.7
4,697,294	+				-0.6
4,697,352	+				+0.1
4,697,352	+				-0.2
4,697,352	+				-0.6
4,697,353	-				+0.8
4,697,353	-				+3.5
4,697,353	-				+0.9
4,697,353	-				+0.6
4,697,355	+				-1.6
4,697,355	+				+1.0
4,697,355	+				-0.6
4,697,355	+				+0.0
4,697,355	+				+0.5
4,697,355	+				-0.5
4,697,355	+				-1.9
4,697,355	+				-1.0
4,697,356	-				-0.4
4,697,356	-				-0.0
4,697,356	-				-0.9
4,697,356	-				-0.1
4,697,356	-				+0.7
4,697,356	-				-1.9
4,697,356	-				-0.0
4,697,364	-				+0.1
4,697,364	-				+0.5
4,697,473	+				-0.1
4,697,473	+				-0.3
4,697,473	+				-0.1
4,697,473	+				-0.8
4,697,473	+				+0.4
4,697,473	+				-0.8
4,697,474	-				+0.9
4,697,474	-				-1.1
4,697,474	-				+1.0
4,697,474	-				-1.3
4,697,474	-				+0.9
4,697,474	-				+0.9
4,697,557	+		Xcc-8004.4942.1	0.20	-1.2
4,697,557	+		Xcc-8004.4942.1	0.20	-0.5
4,697,557	+		Xcc-8004.4942.1	0.20	-0.0
4,697,557	+		Xcc-8004.4942.1	0.20	-1.2
4,697,557	+		Xcc-8004.4942.1	0.20	-0.8
4,697,557	+		Xcc-8004.4942.1	0.20	-0.7
4,697,557	+		Xcc-8004.4942.1	0.20	-0.4
4,697,558	-		Xcc-8004.4942.1	0.20	+0.8
4,697,558	-		Xcc-8004.4942.1	0.20	+0.3
4,697,558	-		Xcc-8004.4942.1	0.20	-1.3
4,697,617	+		Xcc-8004.4942.1	0.29	-0.5
4,697,617	+		Xcc-8004.4942.1	0.29	-0.1
4,697,617	+		Xcc-8004.4942.1	0.29	-0.1
4,697,618	-		Xcc-8004.4942.1	0.29	-0.5
4,697,618	-		Xcc-8004.4942.1	0.29	-0.7
4,697,632	+		Xcc-8004.4942.1	0.31	-0.3
4,697,632	+		Xcc-8004.4942.1	0.31	-0.5
4,697,633	-		Xcc-8004.4942.1	0.31	-0.2
4,697,633	-		Xcc-8004.4942.1	0.31	-1.0
4,697,633	-		Xcc-8004.4942.1	0.31	-0.3
4,697,633	-		Xcc-8004.4942.1	0.31	-1.1
4,697,633	-		Xcc-8004.4942.1	0.31	-1.1
4,697,633	-		Xcc-8004.4942.1	0.31	-1.1
4,697,640	+		Xcc-8004.4942.1	0.32	+0.2
4,697,716	+		Xcc-8004.4942.1	0.44	-1.0
4,697,716	+		Xcc-8004.4942.1	0.44	-1.1
4,697,716	+		Xcc-8004.4942.1	0.44	+1.3
4,697,716	+		Xcc-8004.4942.1	0.44	-0.7
4,697,716	+		Xcc-8004.4942.1	0.44	-1.1
4,697,717	-		Xcc-8004.4942.1	0.44	-1.5
4,697,717	-		Xcc-8004.4942.1	0.44	+3.0
4,697,959	+		Xcc-8004.4942.1	0.80	-0.6
4,697,959	+		Xcc-8004.4942.1	0.80	+0.5
4,697,959	+		Xcc-8004.4942.1	0.80	+0.5
4,697,959	+		Xcc-8004.4942.1	0.80	+0.3
4,697,960	-		Xcc-8004.4942.1	0.80	+0.1
4,697,960	-		Xcc-8004.4942.1	0.80	-1.9
4,698,001	+		Xcc-8004.4942.1	0.86	+0.5
4,698,001	+		Xcc-8004.4942.1	0.86	+0.7
4,698,001	+		Xcc-8004.4942.1	0.86	-1.0
4,698,002	-		Xcc-8004.4942.1	0.87	-0.6
4,698,002	-		Xcc-8004.4942.1	0.87	-1.2
4,698,052	+				+1.2
4,698,052	+				-0.7
4,698,052	+				-2.0
4,698,052	+				-0.1
4,698,052	+				-0.6
4,698,052	+				+0.8
4,698,052	+				-1.3
4,698,053	-				-1.0
4,698,053	-				+0.5
4,698,053	-				-2.0
4,698,053	-				+0.5
4,698,053	-				+0.6
4,698,053	-				-0.3
4,698,053	-				-1.4
4,698,064	+				-0.9
4,698,064	+				-0.0
4,698,064	+				+2.2
4,698,064	+				+0.9
4,698,065	-				+0.1
4,698,065	-				-0.1
4,698,396	-		Xcc-8004.4944.1	0.26	+0.9
4,698,666	+		Xcc-8004.4944.1	0.48	+0.1
4,698,666	+		Xcc-8004.4944.1	0.48	+0.6
4,698,666	+		Xcc-8004.4944.1	0.48	-0.8
4,698,667	-		Xcc-8004.4944.1	0.48	-0.3
4,698,667	-		Xcc-8004.4944.1	0.48	+0.8
4,698,667	-		Xcc-8004.4944.1	0.48	+0.2
4,698,749	+		Xcc-8004.4944.1	0.55	+1.4
4,698,750	-		Xcc-8004.4944.1	0.55	-2.0
4,698,813	+		Xcc-8004.4944.1	0.60	+0.5
4,698,850	+		Xcc-8004.4944.1	0.63	+0.1
4,698,850	+		Xcc-8004.4944.1	0.63	-0.5
4,698,850	+		Xcc-8004.4944.1	0.63	+0.1
4,698,850	+		Xcc-8004.4944.1	0.63	+0.1
4,698,850	+		Xcc-8004.4944.1	0.63	-3.8
4,698,850	+		Xcc-8004.4944.1	0.63	+0.4
4,698,851	-		Xcc-8004.4944.1	0.63	+1.0
4,698,851	-		Xcc-8004.4944.1	0.63	-0.7
4,698,851	-		Xcc-8004.4944.1	0.63	+0.9