Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4776.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4774.1 and Xcc-8004.4775.1 are separated by 8 nucleotidesXcc-8004.4775.1 and Xcc-8004.4776.1 overlap by 4 nucleotidesXcc-8004.4776.1 and Xcc-8004.4777.1 are separated by 75 nucleotides Xcc-8004.4774.1: Xcc-8004.4774.1 - Response regulator protein, at 4,542,448 to 4,543,290 Xcc-8004.4774.1 Xcc-8004.4775.1: Xcc-8004.4775.1 - Cell division protein FtsX, at 4,543,299 to 4,544,249 Xcc-8004.4775.1 Xcc-8004.4776.1: Xcc-8004.4776.1 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 4,544,246 to 4,544,932 Xcc-8004.4776.1 Xcc-8004.4777.1: Xcc-8004.4777.1 - ATP-dependent RNA helicase RhlB, at 4,545,008 to 4,546,777 Xcc-8004.4777.1 Position (kb) 4544 4545Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4543.376 kb on + strandat 4543.424 kb on + strand, within Xcc-8004.4775.1at 4543.424 kb on + strand, within Xcc-8004.4775.1at 4543.438 kb on + strand, within Xcc-8004.4775.1at 4543.438 kb on + strand, within Xcc-8004.4775.1at 4543.438 kb on + strand, within Xcc-8004.4775.1at 4543.438 kb on + strand, within Xcc-8004.4775.1at 4543.438 kb on + strand, within Xcc-8004.4775.1at 4543.438 kb on + strand, within Xcc-8004.4775.1at 4543.438 kb on + strand, within Xcc-8004.4775.1at 4543.438 kb on + strand, within Xcc-8004.4775.1at 4543.439 kb on - strand, within Xcc-8004.4775.1at 4543.439 kb on - strand, within Xcc-8004.4775.1at 4543.439 kb on - strand, within Xcc-8004.4775.1at 4543.439 kb on - strand, within Xcc-8004.4775.1at 4543.439 kb on - strand, within Xcc-8004.4775.1at 4543.466 kb on + strand, within Xcc-8004.4775.1at 4543.466 kb on + strand, within Xcc-8004.4775.1at 4543.467 kb on - strand, within Xcc-8004.4775.1at 4543.467 kb on - strand, within Xcc-8004.4775.1at 4543.544 kb on - strand, within Xcc-8004.4775.1at 4543.544 kb on - strand, within Xcc-8004.4775.1at 4543.623 kb on - strand, within Xcc-8004.4775.1at 4543.637 kb on + strand, within Xcc-8004.4775.1at 4543.638 kb on - strand, within Xcc-8004.4775.1at 4543.638 kb on - strand, within Xcc-8004.4775.1at 4543.723 kb on - strand, within Xcc-8004.4775.1at 4543.723 kb on - strand, within Xcc-8004.4775.1at 4543.723 kb on - strand, within Xcc-8004.4775.1at 4543.838 kb on + strand, within Xcc-8004.4775.1at 4543.838 kb on + strand, within Xcc-8004.4775.1at 4543.839 kb on - strand, within Xcc-8004.4775.1at 4543.839 kb on - strand, within Xcc-8004.4775.1at 4543.839 kb on - strand, within Xcc-8004.4775.1at 4543.839 kb on - strand, within Xcc-8004.4775.1at 4543.839 kb on - strand, within Xcc-8004.4775.1at 4544.043 kb on - strand, within Xcc-8004.4775.1at 4544.043 kb on - strand, within Xcc-8004.4775.1at 4544.043 kb on - strand, within Xcc-8004.4775.1at 4544.673 kb on + strand, within Xcc-8004.4776.1at 4544.673 kb on + strand, within Xcc-8004.4776.1at 4544.673 kb on + strand, within Xcc-8004.4776.1at 4544.673 kb on + strand, within Xcc-8004.4776.1at 4544.673 kb on + strand, within Xcc-8004.4776.1at 4544.895 kb on + strandat 4544.895 kb on + strandat 4544.895 kb on + strandat 4544.896 kb on - strandat 4544.896 kb on - strandat 4544.896 kb on - strandat 4544.896 kb on - strandat 4544.941 kb on + strandat 4544.942 kb on - strandat 4545.004 kb on + strandat 4545.004 kb on + strandat 4545.004 kb on + strandat 4545.005 kb on - strandat 4545.005 kb on - strandat 4545.005 kb on - strandat 4545.093 kb on - strandat 4545.572 kb on - strand, within Xcc-8004.4777.1at 4545.606 kb on + strand, within Xcc-8004.4777.1at 4545.606 kb on + strand, within Xcc-8004.4777.1at 4545.606 kb on + strand, within Xcc-8004.4777.1at 4545.606 kb on + strand, within Xcc-8004.4777.1at 4545.606 kb on + strand, within Xcc-8004.4777.1at 4545.607 kb on - strand, within Xcc-8004.4777.1at 4545.607 kb on - strand, within Xcc-8004.4777.1at 4545.607 kb on - strand, within Xcc-8004.4777.1at 4545.607 kb on - strand, within Xcc-8004.4777.1at 4545.607 kb on - strand, within Xcc-8004.4777.1at 4545.607 kb on - strand, within Xcc-8004.4777.1at 4545.637 kb on - strand, within Xcc-8004.4777.1at 4545.708 kb on + strand, within Xcc-8004.4777.1at 4545.708 kb on + strand, within Xcc-8004.4777.1at 4545.708 kb on + strand, within Xcc-8004.4777.1at 4545.708 kb on + strand, within Xcc-8004.4777.1at 4545.708 kb on + strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.709 kb on - strand, within Xcc-8004.4777.1at 4545.735 kb on + strand, within Xcc-8004.4777.1at 4545.735 kb on + strand, within Xcc-8004.4777.1at 4545.741 kb on + strand, within Xcc-8004.4777.1at 4545.741 kb on + strand, within Xcc-8004.4777.1at 4545.741 kb on + strand, within Xcc-8004.4777.1at 4545.742 kb on - strand, within Xcc-8004.4777.1at 4545.742 kb on - strand, within Xcc-8004.4777.1at 4545.742 kb on - strand, within Xcc-8004.4777.1at 4545.742 kb on - strand, within Xcc-8004.4777.1at 4545.742 kb on - strand, within Xcc-8004.4777.1at 4545.747 kb on + strand, within Xcc-8004.4777.1at 4545.747 kb on + strand, within Xcc-8004.4777.1at 4545.747 kb on + strand, within Xcc-8004.4777.1at 4545.747 kb on + strand, within Xcc-8004.4777.1at 4545.747 kb on + strand, within Xcc-8004.4777.1at 4545.747 kb on + strand, within Xcc-8004.4777.1at 4545.747 kb on + strand, within Xcc-8004.4777.1at 4545.747 kb on + strand, within Xcc-8004.4777.1at 4545.747 kb on + strand, within Xcc-8004.4777.1at 4545.748 kb on - strand, within Xcc-8004.4777.1at 4545.748 kb on - strand, within Xcc-8004.4777.1at 4545.748 kb on - strand, within Xcc-8004.4777.1at 4545.748 kb on - strand, within Xcc-8004.4777.1at 4545.748 kb on - strand, within Xcc-8004.4777.1at 4545.748 kb on - strand, within Xcc-8004.4777.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,543,376 + -0.3
4,543,424 + Xcc-8004.4775.1 0.13 -0.1
4,543,424 + Xcc-8004.4775.1 0.13 +0.1
4,543,438 + Xcc-8004.4775.1 0.15 -1.3
4,543,438 + Xcc-8004.4775.1 0.15 -0.0
4,543,438 + Xcc-8004.4775.1 0.15 -0.0
4,543,438 + Xcc-8004.4775.1 0.15 -1.1
4,543,438 + Xcc-8004.4775.1 0.15 -1.0
4,543,438 + Xcc-8004.4775.1 0.15 +0.6
4,543,438 + Xcc-8004.4775.1 0.15 -1.5
4,543,438 + Xcc-8004.4775.1 0.15 +0.0
4,543,439 - Xcc-8004.4775.1 0.15 +0.1
4,543,439 - Xcc-8004.4775.1 0.15 +0.1
4,543,439 - Xcc-8004.4775.1 0.15 -0.7
4,543,439 - Xcc-8004.4775.1 0.15 -2.2
4,543,439 - Xcc-8004.4775.1 0.15 -0.8
4,543,466 + Xcc-8004.4775.1 0.18 -1.9
4,543,466 + Xcc-8004.4775.1 0.18 +1.1
4,543,467 - Xcc-8004.4775.1 0.18 +0.7
4,543,467 - Xcc-8004.4775.1 0.18 +0.4
4,543,544 - Xcc-8004.4775.1 0.26 +0.6
4,543,544 - Xcc-8004.4775.1 0.26 -3.0
4,543,623 - Xcc-8004.4775.1 0.34 -0.4
4,543,637 + Xcc-8004.4775.1 0.36 +1.3
4,543,638 - Xcc-8004.4775.1 0.36 +0.8
4,543,638 - Xcc-8004.4775.1 0.36 +0.4
4,543,723 - Xcc-8004.4775.1 0.45 -1.8
4,543,723 - Xcc-8004.4775.1 0.45 -0.6
4,543,723 - Xcc-8004.4775.1 0.45 +0.7
4,543,838 + Xcc-8004.4775.1 0.57 -3.0
4,543,838 + Xcc-8004.4775.1 0.57 -0.9
4,543,839 - Xcc-8004.4775.1 0.57 +0.8
4,543,839 - Xcc-8004.4775.1 0.57 +0.1
4,543,839 - Xcc-8004.4775.1 0.57 -0.4
4,543,839 - Xcc-8004.4775.1 0.57 +1.3
4,543,839 - Xcc-8004.4775.1 0.57 -0.3
4,544,043 - Xcc-8004.4775.1 0.78 -2.1
4,544,043 - Xcc-8004.4775.1 0.78 -0.5
4,544,043 - Xcc-8004.4775.1 0.78 -0.2
4,544,673 + Xcc-8004.4776.1 0.62 -0.5
4,544,673 + Xcc-8004.4776.1 0.62 -1.7
4,544,673 + Xcc-8004.4776.1 0.62 -1.1
4,544,673 + Xcc-8004.4776.1 0.62 +0.3
4,544,673 + Xcc-8004.4776.1 0.62 -0.0
4,544,895 + -1.5
4,544,895 + -0.0
4,544,895 + +1.5
4,544,896 - -0.1
4,544,896 - -0.9
4,544,896 - -0.4
4,544,896 - -0.1
4,544,941 + +0.1
4,544,942 - +0.3
4,545,004 + +0.4
4,545,004 + -1.5
4,545,004 + -0.1
4,545,005 - -0.2
4,545,005 - +0.7
4,545,005 - +0.8
4,545,093 - +2.2
4,545,572 - Xcc-8004.4777.1 0.32 -0.7
4,545,606 + Xcc-8004.4777.1 0.34 -1.0
4,545,606 + Xcc-8004.4777.1 0.34 +0.3
4,545,606 + Xcc-8004.4777.1 0.34 -2.2
4,545,606 + Xcc-8004.4777.1 0.34 +0.9
4,545,606 + Xcc-8004.4777.1 0.34 +0.7
4,545,607 - Xcc-8004.4777.1 0.34 -0.3
4,545,607 - Xcc-8004.4777.1 0.34 +0.2
4,545,607 - Xcc-8004.4777.1 0.34 -1.5
4,545,607 - Xcc-8004.4777.1 0.34 -0.1
4,545,607 - Xcc-8004.4777.1 0.34 +2.7
4,545,607 - Xcc-8004.4777.1 0.34 +0.5
4,545,637 - Xcc-8004.4777.1 0.36 -0.4
4,545,708 + Xcc-8004.4777.1 0.40 -0.7
4,545,708 + Xcc-8004.4777.1 0.40 -1.6
4,545,708 + Xcc-8004.4777.1 0.40 -2.5
4,545,708 + Xcc-8004.4777.1 0.40 +0.5
4,545,708 + Xcc-8004.4777.1 0.40 -2.1
4,545,709 - Xcc-8004.4777.1 0.40 +0.7
4,545,709 - Xcc-8004.4777.1 0.40 +0.5
4,545,709 - Xcc-8004.4777.1 0.40 -0.3
4,545,709 - Xcc-8004.4777.1 0.40 -0.9
4,545,709 - Xcc-8004.4777.1 0.40 +0.5
4,545,709 - Xcc-8004.4777.1 0.40 -0.3
4,545,709 - Xcc-8004.4777.1 0.40 -1.0
4,545,709 - Xcc-8004.4777.1 0.40 -0.9
4,545,709 - Xcc-8004.4777.1 0.40 -1.6
4,545,709 - Xcc-8004.4777.1 0.40 -0.5
4,545,709 - Xcc-8004.4777.1 0.40 +0.5
4,545,709 - Xcc-8004.4777.1 0.40 +1.7
4,545,735 + Xcc-8004.4777.1 0.41 -1.4
4,545,735 + Xcc-8004.4777.1 0.41 -0.4
4,545,741 + Xcc-8004.4777.1 0.41 +0.1
4,545,741 + Xcc-8004.4777.1 0.41 -0.1
4,545,741 + Xcc-8004.4777.1 0.41 +0.1
4,545,742 - Xcc-8004.4777.1 0.41 -1.3
4,545,742 - Xcc-8004.4777.1 0.41 +0.2
4,545,742 - Xcc-8004.4777.1 0.41 -1.4
4,545,742 - Xcc-8004.4777.1 0.41 +0.9
4,545,742 - Xcc-8004.4777.1 0.41 -1.0
4,545,747 + Xcc-8004.4777.1 0.42 -2.1
4,545,747 + Xcc-8004.4777.1 0.42 -0.2
4,545,747 + Xcc-8004.4777.1 0.42 +1.5
4,545,747 + Xcc-8004.4777.1 0.42 -0.5
4,545,747 + Xcc-8004.4777.1 0.42 +0.2
4,545,747 + Xcc-8004.4777.1 0.42 +0.1
4,545,747 + Xcc-8004.4777.1 0.42 -2.2
4,545,747 + Xcc-8004.4777.1 0.42 -1.6
4,545,747 + Xcc-8004.4777.1 0.42 +0.1
4,545,748 - Xcc-8004.4777.1 0.42 +0.2
4,545,748 - Xcc-8004.4777.1 0.42 +0.1
4,545,748 - Xcc-8004.4777.1 0.42 +0.7
4,545,748 - Xcc-8004.4777.1 0.42 -0.6
4,545,748 - Xcc-8004.4777.1 0.42 +0.4
4,545,748 - Xcc-8004.4777.1 0.42 -1.1

Or see this region's nucleotide sequence