Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.476.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.475.1 and Xcc-8004.476.1 overlap by 4 nucleotidesXcc-8004.476.1 and Xcc-8004.477.1 overlap by 4 nucleotides Xcc-8004.475.1: Xcc-8004.475.1 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6); Glutaconate CoA-transferase subunit A (EC 2.8.3.12), at 438,208 to 439,071 Xcc-8004.475.1 Xcc-8004.476.1: Xcc-8004.476.1 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6); Glutaconate CoA-transferase subunit B (EC 2.8.3.12), at 439,068 to 439,856 Xcc-8004.476.1 Xcc-8004.477.1: Xcc-8004.477.1 - Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-), at 439,853 to 441,061 Xcc-8004.477.1 Position (kb) 439 440Strain fitness (log2 ratio) -2 -1 0 1 2 3at 438.070 kb on + strandat 438.071 kb on - strandat 438.072 kb on + strandat 438.073 kb on - strandat 438.173 kb on + strandat 438.173 kb on + strandat 438.173 kb on + strandat 438.174 kb on - strandat 438.174 kb on - strandat 438.285 kb on + strandat 438.285 kb on + strandat 438.376 kb on + strand, within Xcc-8004.475.1at 438.376 kb on + strand, within Xcc-8004.475.1at 438.377 kb on - strand, within Xcc-8004.475.1at 438.377 kb on - strand, within Xcc-8004.475.1at 438.538 kb on + strand, within Xcc-8004.475.1at 438.538 kb on + strand, within Xcc-8004.475.1at 438.538 kb on + strand, within Xcc-8004.475.1at 438.538 kb on + strand, within Xcc-8004.475.1at 438.539 kb on - strand, within Xcc-8004.475.1at 438.539 kb on - strand, within Xcc-8004.475.1at 438.539 kb on - strand, within Xcc-8004.475.1at 438.539 kb on - strand, within Xcc-8004.475.1at 438.539 kb on - strand, within Xcc-8004.475.1at 438.583 kb on + strand, within Xcc-8004.475.1at 438.583 kb on + strand, within Xcc-8004.475.1at 438.583 kb on + strand, within Xcc-8004.475.1at 438.583 kb on + strand, within Xcc-8004.475.1at 438.584 kb on - strand, within Xcc-8004.475.1at 438.584 kb on - strand, within Xcc-8004.475.1at 438.584 kb on - strand, within Xcc-8004.475.1at 438.901 kb on + strand, within Xcc-8004.475.1at 438.901 kb on + strand, within Xcc-8004.475.1at 438.901 kb on + strand, within Xcc-8004.475.1at 438.901 kb on + strand, within Xcc-8004.475.1at 438.902 kb on - strand, within Xcc-8004.475.1at 438.902 kb on - strand, within Xcc-8004.475.1at 438.913 kb on + strand, within Xcc-8004.475.1at 438.913 kb on + strand, within Xcc-8004.475.1at 438.913 kb on + strand, within Xcc-8004.475.1at 438.914 kb on - strand, within Xcc-8004.475.1at 438.937 kb on + strand, within Xcc-8004.475.1at 438.937 kb on + strand, within Xcc-8004.475.1at 438.938 kb on - strand, within Xcc-8004.475.1at 439.039 kb on + strandat 439.039 kb on + strandat 439.039 kb on + strandat 439.040 kb on - strandat 439.215 kb on + strand, within Xcc-8004.476.1at 439.216 kb on - strand, within Xcc-8004.476.1at 439.216 kb on - strand, within Xcc-8004.476.1at 439.216 kb on - strand, within Xcc-8004.476.1at 439.216 kb on - strand, within Xcc-8004.476.1at 439.327 kb on - strand, within Xcc-8004.476.1at 439.354 kb on + strand, within Xcc-8004.476.1at 439.354 kb on + strand, within Xcc-8004.476.1at 439.354 kb on + strand, within Xcc-8004.476.1at 439.354 kb on + strand, within Xcc-8004.476.1at 439.355 kb on - strand, within Xcc-8004.476.1at 439.355 kb on - strand, within Xcc-8004.476.1at 439.355 kb on - strand, within Xcc-8004.476.1at 439.355 kb on - strand, within Xcc-8004.476.1at 439.355 kb on - strand, within Xcc-8004.476.1at 439.355 kb on - strand, within Xcc-8004.476.1at 439.630 kb on + strand, within Xcc-8004.476.1at 439.630 kb on + strand, within Xcc-8004.476.1at 439.630 kb on + strand, within Xcc-8004.476.1at 439.630 kb on + strand, within Xcc-8004.476.1at 439.630 kb on + strand, within Xcc-8004.476.1at 439.630 kb on + strand, within Xcc-8004.476.1at 439.630 kb on + strand, within Xcc-8004.476.1at 439.631 kb on - strand, within Xcc-8004.476.1at 439.631 kb on - strand, within Xcc-8004.476.1at 439.631 kb on - strand, within Xcc-8004.476.1at 439.631 kb on - strand, within Xcc-8004.476.1at 439.865 kb on + strandat 439.866 kb on - strandat 439.866 kb on - strandat 440.009 kb on + strand, within Xcc-8004.477.1at 440.009 kb on + strand, within Xcc-8004.477.1at 440.009 kb on + strand, within Xcc-8004.477.1at 440.010 kb on - strand, within Xcc-8004.477.1at 440.010 kb on - strand, within Xcc-8004.477.1at 440.372 kb on + strand, within Xcc-8004.477.1at 440.372 kb on + strand, within Xcc-8004.477.1at 440.373 kb on - strand, within Xcc-8004.477.1at 440.735 kb on + strand, within Xcc-8004.477.1at 440.735 kb on + strand, within Xcc-8004.477.1at 440.735 kb on + strand, within Xcc-8004.477.1at 440.735 kb on + strand, within Xcc-8004.477.1at 440.735 kb on + strand, within Xcc-8004.477.1at 440.735 kb on + strand, within Xcc-8004.477.1at 440.735 kb on + strand, within Xcc-8004.477.1at 440.735 kb on + strand, within Xcc-8004.477.1at 440.735 kb on + strand, within Xcc-8004.477.1at 440.735 kb on + strand, within Xcc-8004.477.1at 440.735 kb on + strand, within Xcc-8004.477.1at 440.735 kb on + strand, within Xcc-8004.477.1at 440.736 kb on - strand, within Xcc-8004.477.1at 440.736 kb on - strand, within Xcc-8004.477.1at 440.736 kb on - strand, within Xcc-8004.477.1at 440.736 kb on - strand, within Xcc-8004.477.1at 440.736 kb on - strand, within Xcc-8004.477.1at 440.736 kb on - strand, within Xcc-8004.477.1at 440.736 kb on - strand, within Xcc-8004.477.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
remove
438,070 + +0.1
438,071 - -0.1
438,072 + -2.2
438,073 - +1.0
438,173 + +1.0
438,173 + -1.3
438,173 + -0.9
438,174 - -1.2
438,174 - +0.3
438,285 + -1.0
438,285 + -0.2
438,376 + Xcc-8004.475.1 0.19 +0.2
438,376 + Xcc-8004.475.1 0.19 +0.2
438,377 - Xcc-8004.475.1 0.20 +0.1
438,377 - Xcc-8004.475.1 0.20 -1.0
438,538 + Xcc-8004.475.1 0.38 -0.8
438,538 + Xcc-8004.475.1 0.38 +0.4
438,538 + Xcc-8004.475.1 0.38 +0.5
438,538 + Xcc-8004.475.1 0.38 -0.5
438,539 - Xcc-8004.475.1 0.38 +0.6
438,539 - Xcc-8004.475.1 0.38 -1.4
438,539 - Xcc-8004.475.1 0.38 -0.6
438,539 - Xcc-8004.475.1 0.38 -1.0
438,539 - Xcc-8004.475.1 0.38 -0.3
438,583 + Xcc-8004.475.1 0.43 +0.7
438,583 + Xcc-8004.475.1 0.43 -0.7
438,583 + Xcc-8004.475.1 0.43 -0.8
438,583 + Xcc-8004.475.1 0.43 +0.0
438,584 - Xcc-8004.475.1 0.44 -1.3
438,584 - Xcc-8004.475.1 0.44 -0.1
438,584 - Xcc-8004.475.1 0.44 -0.9
438,901 + Xcc-8004.475.1 0.80 +0.3
438,901 + Xcc-8004.475.1 0.80 -0.0
438,901 + Xcc-8004.475.1 0.80 +0.2
438,901 + Xcc-8004.475.1 0.80 -0.1
438,902 - Xcc-8004.475.1 0.80 -0.8
438,902 - Xcc-8004.475.1 0.80 +2.2
438,913 + Xcc-8004.475.1 0.82 -0.5
438,913 + Xcc-8004.475.1 0.82 +0.6
438,913 + Xcc-8004.475.1 0.82 +0.4
438,914 - Xcc-8004.475.1 0.82 -0.6
438,937 + Xcc-8004.475.1 0.84 -0.2
438,937 + Xcc-8004.475.1 0.84 -0.5
438,938 - Xcc-8004.475.1 0.84 -0.6
439,039 + +1.1
439,039 + -2.2
439,039 + +0.6
439,040 - -0.8
439,215 + Xcc-8004.476.1 0.19 +0.9
439,216 - Xcc-8004.476.1 0.19 +0.6
439,216 - Xcc-8004.476.1 0.19 +1.0
439,216 - Xcc-8004.476.1 0.19 -1.1
439,216 - Xcc-8004.476.1 0.19 +0.3
439,327 - Xcc-8004.476.1 0.33 +0.1
439,354 + Xcc-8004.476.1 0.36 +0.3
439,354 + Xcc-8004.476.1 0.36 -0.5
439,354 + Xcc-8004.476.1 0.36 -0.2
439,354 + Xcc-8004.476.1 0.36 -0.4
439,355 - Xcc-8004.476.1 0.36 -0.1
439,355 - Xcc-8004.476.1 0.36 -0.9
439,355 - Xcc-8004.476.1 0.36 -0.1
439,355 - Xcc-8004.476.1 0.36 +3.0
439,355 - Xcc-8004.476.1 0.36 +0.0
439,355 - Xcc-8004.476.1 0.36 -0.2
439,630 + Xcc-8004.476.1 0.71 -0.8
439,630 + Xcc-8004.476.1 0.71 +1.2
439,630 + Xcc-8004.476.1 0.71 +0.9
439,630 + Xcc-8004.476.1 0.71 +1.2
439,630 + Xcc-8004.476.1 0.71 -0.3
439,630 + Xcc-8004.476.1 0.71 +0.8
439,630 + Xcc-8004.476.1 0.71 -1.9
439,631 - Xcc-8004.476.1 0.71 +1.3
439,631 - Xcc-8004.476.1 0.71 +1.2
439,631 - Xcc-8004.476.1 0.71 -1.3
439,631 - Xcc-8004.476.1 0.71 -0.3
439,865 + -0.7
439,866 - -0.8
439,866 - -1.4
440,009 + Xcc-8004.477.1 0.13 +0.4
440,009 + Xcc-8004.477.1 0.13 +0.9
440,009 + Xcc-8004.477.1 0.13 +1.3
440,010 - Xcc-8004.477.1 0.13 -0.9
440,010 - Xcc-8004.477.1 0.13 +1.2
440,372 + Xcc-8004.477.1 0.43 +0.8
440,372 + Xcc-8004.477.1 0.43 +0.6
440,373 - Xcc-8004.477.1 0.43 -1.6
440,735 + Xcc-8004.477.1 0.73 +0.4
440,735 + Xcc-8004.477.1 0.73 +0.0
440,735 + Xcc-8004.477.1 0.73 +0.8
440,735 + Xcc-8004.477.1 0.73 -0.5
440,735 + Xcc-8004.477.1 0.73 -0.4
440,735 + Xcc-8004.477.1 0.73 -1.9
440,735 + Xcc-8004.477.1 0.73 +1.2
440,735 + Xcc-8004.477.1 0.73 +0.2
440,735 + Xcc-8004.477.1 0.73 +0.6
440,735 + Xcc-8004.477.1 0.73 +0.3
440,735 + Xcc-8004.477.1 0.73 +1.5
440,735 + Xcc-8004.477.1 0.73 +0.2
440,736 - Xcc-8004.477.1 0.73 +0.1
440,736 - Xcc-8004.477.1 0.73 -0.3
440,736 - Xcc-8004.477.1 0.73 -1.5
440,736 - Xcc-8004.477.1 0.73 +1.0
440,736 - Xcc-8004.477.1 0.73 +0.0
440,736 - Xcc-8004.477.1 0.73 +0.5
440,736 - Xcc-8004.477.1 0.73 +0.2

Or see this region's nucleotide sequence