Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.474.1 and Xcc-8004.475.1 are separated by 253 nucleotides Xcc-8004.475.1 and Xcc-8004.476.1 overlap by 4 nucleotides Xcc-8004.476.1 and Xcc-8004.477.1 overlap by 4 nucleotides
Xcc-8004.474.1: Xcc-8004.474.1 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 436,878 to 437,954
Xcc-8004.474.1
Xcc-8004.475.1: Xcc-8004.475.1 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6); Glutaconate CoA-transferase subunit A (EC 2.8.3.12), at 438,208 to 439,071
Xcc-8004.475.1
Xcc-8004.476.1: Xcc-8004.476.1 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6); Glutaconate CoA-transferase subunit B (EC 2.8.3.12), at 439,068 to 439,856
Xcc-8004.476.1
Xcc-8004.477.1: Xcc-8004.477.1 - Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-), at 439,853 to 441,061
Xcc-8004.477.1
Position (kb) 438
439
440 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 437.308 kb on + strand, within Xcc-8004.474.1 at 437.308 kb on + strand, within Xcc-8004.474.1 at 437.308 kb on + strand, within Xcc-8004.474.1 at 437.308 kb on + strand, within Xcc-8004.474.1 at 437.308 kb on + strand, within Xcc-8004.474.1 at 437.308 kb on + strand, within Xcc-8004.474.1 at 437.308 kb on + strand, within Xcc-8004.474.1 at 437.623 kb on + strand, within Xcc-8004.474.1 at 437.623 kb on + strand, within Xcc-8004.474.1 at 437.623 kb on + strand, within Xcc-8004.474.1 at 437.623 kb on + strand, within Xcc-8004.474.1 at 437.623 kb on + strand, within Xcc-8004.474.1 at 437.624 kb on - strand, within Xcc-8004.474.1 at 437.624 kb on - strand, within Xcc-8004.474.1 at 437.624 kb on - strand, within Xcc-8004.474.1 at 437.720 kb on - strand, within Xcc-8004.474.1 at 437.720 kb on - strand, within Xcc-8004.474.1 at 437.840 kb on - strand, within Xcc-8004.474.1 at 437.975 kb on + strand at 437.975 kb on + strand at 437.975 kb on + strand at 437.975 kb on + strand at 437.975 kb on + strand at 437.975 kb on + strand at 437.975 kb on + strand at 437.976 kb on - strand at 437.976 kb on - strand at 437.976 kb on - strand at 437.976 kb on - strand at 437.976 kb on - strand at 437.976 kb on - strand at 437.976 kb on - strand at 437.976 kb on - strand at 437.976 kb on - strand at 437.976 kb on - strand at 438.066 kb on + strand at 438.067 kb on - strand at 438.067 kb on - strand at 438.070 kb on + strand at 438.071 kb on - strand at 438.072 kb on + strand at 438.073 kb on - strand at 438.173 kb on + strand at 438.173 kb on + strand at 438.173 kb on + strand at 438.174 kb on - strand at 438.174 kb on - strand at 438.285 kb on + strand at 438.285 kb on + strand at 438.376 kb on + strand, within Xcc-8004.475.1 at 438.376 kb on + strand, within Xcc-8004.475.1 at 438.377 kb on - strand, within Xcc-8004.475.1 at 438.377 kb on - strand, within Xcc-8004.475.1 at 438.538 kb on + strand, within Xcc-8004.475.1 at 438.538 kb on + strand, within Xcc-8004.475.1 at 438.538 kb on + strand, within Xcc-8004.475.1 at 438.538 kb on + strand, within Xcc-8004.475.1 at 438.539 kb on - strand, within Xcc-8004.475.1 at 438.539 kb on - strand, within Xcc-8004.475.1 at 438.539 kb on - strand, within Xcc-8004.475.1 at 438.539 kb on - strand, within Xcc-8004.475.1 at 438.539 kb on - strand, within Xcc-8004.475.1 at 438.583 kb on + strand, within Xcc-8004.475.1 at 438.583 kb on + strand, within Xcc-8004.475.1 at 438.583 kb on + strand, within Xcc-8004.475.1 at 438.583 kb on + strand, within Xcc-8004.475.1 at 438.584 kb on - strand, within Xcc-8004.475.1 at 438.584 kb on - strand, within Xcc-8004.475.1 at 438.584 kb on - strand, within Xcc-8004.475.1 at 438.901 kb on + strand, within Xcc-8004.475.1 at 438.901 kb on + strand, within Xcc-8004.475.1 at 438.901 kb on + strand, within Xcc-8004.475.1 at 438.901 kb on + strand, within Xcc-8004.475.1 at 438.902 kb on - strand, within Xcc-8004.475.1 at 438.902 kb on - strand, within Xcc-8004.475.1 at 438.913 kb on + strand, within Xcc-8004.475.1 at 438.913 kb on + strand, within Xcc-8004.475.1 at 438.913 kb on + strand, within Xcc-8004.475.1 at 438.914 kb on - strand, within Xcc-8004.475.1 at 438.937 kb on + strand, within Xcc-8004.475.1 at 438.937 kb on + strand, within Xcc-8004.475.1 at 438.938 kb on - strand, within Xcc-8004.475.1 at 439.039 kb on + strand at 439.039 kb on + strand at 439.039 kb on + strand at 439.040 kb on - strand at 439.215 kb on + strand, within Xcc-8004.476.1 at 439.216 kb on - strand, within Xcc-8004.476.1 at 439.216 kb on - strand, within Xcc-8004.476.1 at 439.216 kb on - strand, within Xcc-8004.476.1 at 439.216 kb on - strand, within Xcc-8004.476.1 at 439.327 kb on - strand, within Xcc-8004.476.1 at 439.354 kb on + strand, within Xcc-8004.476.1 at 439.354 kb on + strand, within Xcc-8004.476.1 at 439.354 kb on + strand, within Xcc-8004.476.1 at 439.354 kb on + strand, within Xcc-8004.476.1 at 439.355 kb on - strand, within Xcc-8004.476.1 at 439.355 kb on - strand, within Xcc-8004.476.1 at 439.355 kb on - strand, within Xcc-8004.476.1 at 439.355 kb on - strand, within Xcc-8004.476.1 at 439.355 kb on - strand, within Xcc-8004.476.1 at 439.355 kb on - strand, within Xcc-8004.476.1 at 439.630 kb on + strand, within Xcc-8004.476.1 at 439.630 kb on + strand, within Xcc-8004.476.1 at 439.630 kb on + strand, within Xcc-8004.476.1 at 439.630 kb on + strand, within Xcc-8004.476.1 at 439.630 kb on + strand, within Xcc-8004.476.1 at 439.630 kb on + strand, within Xcc-8004.476.1 at 439.630 kb on + strand, within Xcc-8004.476.1 at 439.631 kb on - strand, within Xcc-8004.476.1 at 439.631 kb on - strand, within Xcc-8004.476.1 at 439.631 kb on - strand, within Xcc-8004.476.1 at 439.631 kb on - strand, within Xcc-8004.476.1 at 439.865 kb on + strand at 439.866 kb on - strand at 439.866 kb on - strand at 440.009 kb on + strand, within Xcc-8004.477.1 at 440.009 kb on + strand, within Xcc-8004.477.1 at 440.009 kb on + strand, within Xcc-8004.477.1 at 440.010 kb on - strand, within Xcc-8004.477.1 at 440.010 kb on - strand, within Xcc-8004.477.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 437,308 + Xcc-8004.474.1 0.40 -0.3 437,308 + Xcc-8004.474.1 0.40 -0.4 437,308 + Xcc-8004.474.1 0.40 +1.1 437,308 + Xcc-8004.474.1 0.40 +0.9 437,308 + Xcc-8004.474.1 0.40 +1.1 437,308 + Xcc-8004.474.1 0.40 -0.8 437,308 + Xcc-8004.474.1 0.40 -0.7 437,623 + Xcc-8004.474.1 0.69 -0.4 437,623 + Xcc-8004.474.1 0.69 -0.3 437,623 + Xcc-8004.474.1 0.69 +1.7 437,623 + Xcc-8004.474.1 0.69 +1.0 437,623 + Xcc-8004.474.1 0.69 -0.6 437,624 - Xcc-8004.474.1 0.69 -1.6 437,624 - Xcc-8004.474.1 0.69 +0.0 437,624 - Xcc-8004.474.1 0.69 -0.9 437,720 - Xcc-8004.474.1 0.78 -0.1 437,720 - Xcc-8004.474.1 0.78 -0.3 437,840 - Xcc-8004.474.1 0.89 -1.1 437,975 + -0.5 437,975 + -0.2 437,975 + -0.3 437,975 + -0.3 437,975 + +0.5 437,975 + -0.3 437,975 + +1.2 437,976 - -0.4 437,976 - -1.0 437,976 - +0.5 437,976 - +1.3 437,976 - +2.1 437,976 - +0.8 437,976 - -0.6 437,976 - -0.8 437,976 - +1.3 437,976 - -1.5 438,066 + -0.1 438,067 - -0.1 438,067 - -1.3 438,070 + +0.1 438,071 - -0.1 438,072 + -2.2 438,073 - +1.0 438,173 + +1.0 438,173 + -1.3 438,173 + -0.9 438,174 - -1.2 438,174 - +0.3 438,285 + -1.0 438,285 + -0.2 438,376 + Xcc-8004.475.1 0.19 +0.2 438,376 + Xcc-8004.475.1 0.19 +0.2 438,377 - Xcc-8004.475.1 0.20 +0.1 438,377 - Xcc-8004.475.1 0.20 -1.0 438,538 + Xcc-8004.475.1 0.38 -0.8 438,538 + Xcc-8004.475.1 0.38 +0.4 438,538 + Xcc-8004.475.1 0.38 +0.5 438,538 + Xcc-8004.475.1 0.38 -0.5 438,539 - Xcc-8004.475.1 0.38 +0.6 438,539 - Xcc-8004.475.1 0.38 -1.4 438,539 - Xcc-8004.475.1 0.38 -0.6 438,539 - Xcc-8004.475.1 0.38 -1.0 438,539 - Xcc-8004.475.1 0.38 -0.3 438,583 + Xcc-8004.475.1 0.43 +0.7 438,583 + Xcc-8004.475.1 0.43 -0.7 438,583 + Xcc-8004.475.1 0.43 -0.8 438,583 + Xcc-8004.475.1 0.43 +0.0 438,584 - Xcc-8004.475.1 0.44 -1.3 438,584 - Xcc-8004.475.1 0.44 -0.1 438,584 - Xcc-8004.475.1 0.44 -0.9 438,901 + Xcc-8004.475.1 0.80 +0.3 438,901 + Xcc-8004.475.1 0.80 -0.0 438,901 + Xcc-8004.475.1 0.80 +0.2 438,901 + Xcc-8004.475.1 0.80 -0.1 438,902 - Xcc-8004.475.1 0.80 -0.8 438,902 - Xcc-8004.475.1 0.80 +2.2 438,913 + Xcc-8004.475.1 0.82 -0.5 438,913 + Xcc-8004.475.1 0.82 +0.6 438,913 + Xcc-8004.475.1 0.82 +0.4 438,914 - Xcc-8004.475.1 0.82 -0.6 438,937 + Xcc-8004.475.1 0.84 -0.2 438,937 + Xcc-8004.475.1 0.84 -0.5 438,938 - Xcc-8004.475.1 0.84 -0.6 439,039 + +1.1 439,039 + -2.2 439,039 + +0.6 439,040 - -0.8 439,215 + Xcc-8004.476.1 0.19 +0.9 439,216 - Xcc-8004.476.1 0.19 +0.6 439,216 - Xcc-8004.476.1 0.19 +1.0 439,216 - Xcc-8004.476.1 0.19 -1.1 439,216 - Xcc-8004.476.1 0.19 +0.3 439,327 - Xcc-8004.476.1 0.33 +0.1 439,354 + Xcc-8004.476.1 0.36 +0.3 439,354 + Xcc-8004.476.1 0.36 -0.5 439,354 + Xcc-8004.476.1 0.36 -0.2 439,354 + Xcc-8004.476.1 0.36 -0.4 439,355 - Xcc-8004.476.1 0.36 -0.1 439,355 - Xcc-8004.476.1 0.36 -0.9 439,355 - Xcc-8004.476.1 0.36 -0.1 439,355 - Xcc-8004.476.1 0.36 +3.0 439,355 - Xcc-8004.476.1 0.36 +0.0 439,355 - Xcc-8004.476.1 0.36 -0.2 439,630 + Xcc-8004.476.1 0.71 -0.8 439,630 + Xcc-8004.476.1 0.71 +1.2 439,630 + Xcc-8004.476.1 0.71 +0.9 439,630 + Xcc-8004.476.1 0.71 +1.2 439,630 + Xcc-8004.476.1 0.71 -0.3 439,630 + Xcc-8004.476.1 0.71 +0.8 439,630 + Xcc-8004.476.1 0.71 -1.9 439,631 - Xcc-8004.476.1 0.71 +1.3 439,631 - Xcc-8004.476.1 0.71 +1.2 439,631 - Xcc-8004.476.1 0.71 -1.3 439,631 - Xcc-8004.476.1 0.71 -0.3 439,865 + -0.7 439,866 - -0.8 439,866 - -1.4 440,009 + Xcc-8004.477.1 0.13 +0.4 440,009 + Xcc-8004.477.1 0.13 +0.9 440,009 + Xcc-8004.477.1 0.13 +1.3 440,010 - Xcc-8004.477.1 0.13 -0.9 440,010 - Xcc-8004.477.1 0.13 +1.2
Or see this region's nucleotide sequence