Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.473.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.472.1 and Xcc-8004.473.1 are separated by 276 nucleotidesXcc-8004.473.1 and Xcc-8004.474.1 are separated by 12 nucleotides Xcc-8004.472.1: Xcc-8004.472.1 - Glycerol-3-phosphate regulon repressor, DeoR family, at 434,691 to 435,470 Xcc-8004.472.1 Xcc-8004.473.1: Xcc-8004.473.1 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 435,747 to 436,865 Xcc-8004.473.1 Xcc-8004.474.1: Xcc-8004.474.1 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 436,878 to 437,954 Xcc-8004.474.1 Position (kb) 435 436 437Strain fitness (log2 ratio) -2 -1 0 1 2at 435.262 kb on + strand, within Xcc-8004.472.1at 435.262 kb on + strand, within Xcc-8004.472.1at 435.262 kb on + strand, within Xcc-8004.472.1at 435.262 kb on + strand, within Xcc-8004.472.1at 435.262 kb on + strand, within Xcc-8004.472.1at 435.263 kb on - strand, within Xcc-8004.472.1at 435.263 kb on - strand, within Xcc-8004.472.1at 435.263 kb on - strand, within Xcc-8004.472.1at 435.263 kb on - strand, within Xcc-8004.472.1at 435.342 kb on + strand, within Xcc-8004.472.1at 435.342 kb on + strand, within Xcc-8004.472.1at 435.342 kb on + strand, within Xcc-8004.472.1at 435.343 kb on - strand, within Xcc-8004.472.1at 435.343 kb on - strand, within Xcc-8004.472.1at 435.479 kb on - strandat 435.479 kb on - strandat 435.479 kb on - strandat 435.607 kb on + strandat 435.607 kb on + strandat 435.608 kb on - strandat 435.608 kb on - strandat 435.608 kb on - strandat 435.608 kb on - strandat 435.660 kb on - strandat 435.981 kb on + strand, within Xcc-8004.473.1at 435.981 kb on + strand, within Xcc-8004.473.1at 435.982 kb on - strand, within Xcc-8004.473.1at 435.982 kb on - strand, within Xcc-8004.473.1at 436.156 kb on + strand, within Xcc-8004.473.1at 436.156 kb on + strand, within Xcc-8004.473.1at 436.157 kb on - strand, within Xcc-8004.473.1at 436.157 kb on - strand, within Xcc-8004.473.1at 436.157 kb on - strand, within Xcc-8004.473.1at 436.157 kb on - strand, within Xcc-8004.473.1at 436.157 kb on - strand, within Xcc-8004.473.1at 436.157 kb on - strand, within Xcc-8004.473.1at 436.157 kb on - strand, within Xcc-8004.473.1at 436.157 kb on - strand, within Xcc-8004.473.1at 436.157 kb on - strand, within Xcc-8004.473.1at 436.273 kb on + strand, within Xcc-8004.473.1at 436.274 kb on - strand, within Xcc-8004.473.1at 436.303 kb on + strand, within Xcc-8004.473.1at 436.303 kb on + strand, within Xcc-8004.473.1at 436.304 kb on - strand, within Xcc-8004.473.1at 436.304 kb on - strand, within Xcc-8004.473.1at 436.304 kb on - strand, within Xcc-8004.473.1at 436.304 kb on - strand, within Xcc-8004.473.1at 436.304 kb on - strand, within Xcc-8004.473.1at 436.425 kb on - strand, within Xcc-8004.473.1at 436.475 kb on + strand, within Xcc-8004.473.1at 436.475 kb on + strand, within Xcc-8004.473.1at 436.475 kb on + strand, within Xcc-8004.473.1at 436.475 kb on + strand, within Xcc-8004.473.1at 436.475 kb on + strand, within Xcc-8004.473.1at 436.475 kb on + strand, within Xcc-8004.473.1at 436.476 kb on - strand, within Xcc-8004.473.1at 436.476 kb on - strand, within Xcc-8004.473.1at 436.476 kb on - strand, within Xcc-8004.473.1at 436.476 kb on - strand, within Xcc-8004.473.1at 436.476 kb on - strand, within Xcc-8004.473.1at 436.476 kb on - strand, within Xcc-8004.473.1at 436.476 kb on - strand, within Xcc-8004.473.1at 436.525 kb on + strand, within Xcc-8004.473.1at 436.525 kb on + strand, within Xcc-8004.473.1at 436.526 kb on - strand, within Xcc-8004.473.1at 436.528 kb on + strand, within Xcc-8004.473.1at 436.528 kb on + strand, within Xcc-8004.473.1at 436.528 kb on + strand, within Xcc-8004.473.1at 436.529 kb on - strand, within Xcc-8004.473.1at 436.529 kb on - strand, within Xcc-8004.473.1at 436.529 kb on - strand, within Xcc-8004.473.1at 436.562 kb on - strand, within Xcc-8004.473.1at 436.724 kb on + strand, within Xcc-8004.473.1at 436.724 kb on + strand, within Xcc-8004.473.1at 436.725 kb on - strand, within Xcc-8004.473.1at 437.110 kb on + strand, within Xcc-8004.474.1at 437.111 kb on - strand, within Xcc-8004.474.1at 437.111 kb on - strand, within Xcc-8004.474.1at 437.134 kb on + strand, within Xcc-8004.474.1at 437.134 kb on + strand, within Xcc-8004.474.1at 437.135 kb on - strand, within Xcc-8004.474.1at 437.308 kb on + strand, within Xcc-8004.474.1at 437.308 kb on + strand, within Xcc-8004.474.1at 437.308 kb on + strand, within Xcc-8004.474.1at 437.308 kb on + strand, within Xcc-8004.474.1at 437.308 kb on + strand, within Xcc-8004.474.1at 437.308 kb on + strand, within Xcc-8004.474.1at 437.308 kb on + strand, within Xcc-8004.474.1at 437.623 kb on + strand, within Xcc-8004.474.1at 437.623 kb on + strand, within Xcc-8004.474.1at 437.623 kb on + strand, within Xcc-8004.474.1at 437.623 kb on + strand, within Xcc-8004.474.1at 437.623 kb on + strand, within Xcc-8004.474.1at 437.624 kb on - strand, within Xcc-8004.474.1at 437.624 kb on - strand, within Xcc-8004.474.1at 437.624 kb on - strand, within Xcc-8004.474.1at 437.720 kb on - strand, within Xcc-8004.474.1at 437.720 kb on - strand, within Xcc-8004.474.1at 437.840 kb on - strand, within Xcc-8004.474.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
remove
435,262 + Xcc-8004.472.1 0.73 +1.1
435,262 + Xcc-8004.472.1 0.73 -0.8
435,262 + Xcc-8004.472.1 0.73 +1.3
435,262 + Xcc-8004.472.1 0.73 +0.9
435,262 + Xcc-8004.472.1 0.73 -0.0
435,263 - Xcc-8004.472.1 0.73 -0.6
435,263 - Xcc-8004.472.1 0.73 -1.2
435,263 - Xcc-8004.472.1 0.73 -0.6
435,263 - Xcc-8004.472.1 0.73 -0.7
435,342 + Xcc-8004.472.1 0.83 +1.1
435,342 + Xcc-8004.472.1 0.83 -1.3
435,342 + Xcc-8004.472.1 0.83 -0.0
435,343 - Xcc-8004.472.1 0.84 +1.1
435,343 - Xcc-8004.472.1 0.84 +0.4
435,479 - -1.1
435,479 - +0.0
435,479 - +0.0
435,607 + +0.0
435,607 + -0.8
435,608 - -1.2
435,608 - +0.4
435,608 - +1.1
435,608 - -0.4
435,660 - -1.6
435,981 + Xcc-8004.473.1 0.21 +0.7
435,981 + Xcc-8004.473.1 0.21 +0.8
435,982 - Xcc-8004.473.1 0.21 +0.2
435,982 - Xcc-8004.473.1 0.21 +0.4
436,156 + Xcc-8004.473.1 0.37 +0.1
436,156 + Xcc-8004.473.1 0.37 +0.3
436,157 - Xcc-8004.473.1 0.37 -0.1
436,157 - Xcc-8004.473.1 0.37 +0.4
436,157 - Xcc-8004.473.1 0.37 +1.8
436,157 - Xcc-8004.473.1 0.37 +1.0
436,157 - Xcc-8004.473.1 0.37 -0.7
436,157 - Xcc-8004.473.1 0.37 +0.6
436,157 - Xcc-8004.473.1 0.37 -1.0
436,157 - Xcc-8004.473.1 0.37 -0.4
436,157 - Xcc-8004.473.1 0.37 -0.4
436,273 + Xcc-8004.473.1 0.47 +1.7
436,274 - Xcc-8004.473.1 0.47 +0.3
436,303 + Xcc-8004.473.1 0.50 -0.3
436,303 + Xcc-8004.473.1 0.50 -1.0
436,304 - Xcc-8004.473.1 0.50 +1.1
436,304 - Xcc-8004.473.1 0.50 -2.3
436,304 - Xcc-8004.473.1 0.50 -0.7
436,304 - Xcc-8004.473.1 0.50 +0.9
436,304 - Xcc-8004.473.1 0.50 -1.0
436,425 - Xcc-8004.473.1 0.61 +1.7
436,475 + Xcc-8004.473.1 0.65 +1.2
436,475 + Xcc-8004.473.1 0.65 +0.6
436,475 + Xcc-8004.473.1 0.65 -2.0
436,475 + Xcc-8004.473.1 0.65 +0.3
436,475 + Xcc-8004.473.1 0.65 +0.2
436,475 + Xcc-8004.473.1 0.65 +0.4
436,476 - Xcc-8004.473.1 0.65 -0.1
436,476 - Xcc-8004.473.1 0.65 -0.8
436,476 - Xcc-8004.473.1 0.65 -0.2
436,476 - Xcc-8004.473.1 0.65 -0.4
436,476 - Xcc-8004.473.1 0.65 +0.8
436,476 - Xcc-8004.473.1 0.65 -0.9
436,476 - Xcc-8004.473.1 0.65 +1.0
436,525 + Xcc-8004.473.1 0.70 +0.6
436,525 + Xcc-8004.473.1 0.70 +0.4
436,526 - Xcc-8004.473.1 0.70 -0.1
436,528 + Xcc-8004.473.1 0.70 -0.4
436,528 + Xcc-8004.473.1 0.70 -1.0
436,528 + Xcc-8004.473.1 0.70 -0.3
436,529 - Xcc-8004.473.1 0.70 -0.5
436,529 - Xcc-8004.473.1 0.70 -0.9
436,529 - Xcc-8004.473.1 0.70 +0.3
436,562 - Xcc-8004.473.1 0.73 +0.1
436,724 + Xcc-8004.473.1 0.87 -0.5
436,724 + Xcc-8004.473.1 0.87 -1.1
436,725 - Xcc-8004.473.1 0.87 +0.7
437,110 + Xcc-8004.474.1 0.22 -0.7
437,111 - Xcc-8004.474.1 0.22 +0.3
437,111 - Xcc-8004.474.1 0.22 -0.4
437,134 + Xcc-8004.474.1 0.24 +0.1
437,134 + Xcc-8004.474.1 0.24 +1.3
437,135 - Xcc-8004.474.1 0.24 +1.2
437,308 + Xcc-8004.474.1 0.40 -0.3
437,308 + Xcc-8004.474.1 0.40 -0.4
437,308 + Xcc-8004.474.1 0.40 +1.1
437,308 + Xcc-8004.474.1 0.40 +0.9
437,308 + Xcc-8004.474.1 0.40 +1.1
437,308 + Xcc-8004.474.1 0.40 -0.8
437,308 + Xcc-8004.474.1 0.40 -0.7
437,623 + Xcc-8004.474.1 0.69 -0.4
437,623 + Xcc-8004.474.1 0.69 -0.3
437,623 + Xcc-8004.474.1 0.69 +1.7
437,623 + Xcc-8004.474.1 0.69 +1.0
437,623 + Xcc-8004.474.1 0.69 -0.6
437,624 - Xcc-8004.474.1 0.69 -1.6
437,624 - Xcc-8004.474.1 0.69 +0.0
437,624 - Xcc-8004.474.1 0.69 -0.9
437,720 - Xcc-8004.474.1 0.78 -0.1
437,720 - Xcc-8004.474.1 0.78 -0.3
437,840 - Xcc-8004.474.1 0.89 -1.1

Or see this region's nucleotide sequence