Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4666.1 and Xcc-8004.4667.1 are separated by 177 nucleotides Xcc-8004.4667.1 and Xcc-8004.4668.1 overlap by 7 nucleotides Xcc-8004.4668.1 and Xcc-8004.4669.1 overlap by 4 nucleotides Xcc-8004.4669.1 and Xcc-8004.4671.1 are separated by 527 nucleotides Xcc-8004.4671.1 and Xcc-8004.4672.1 are separated by 53 nucleotides
Xcc-8004.4666.1: Xcc-8004.4666.1 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 4,445,314 to 4,448,871
Xcc-8004.4666.1
Xcc-8004.4667.1: Xcc-8004.4667.1 - Two-component system regulatory protein, at 4,449,049 to 4,449,432
Xcc-8004.4667.1
Xcc-8004.4668.1: Xcc-8004.4668.1 - FIG01210168: hypothetical protein, at 4,449,426 to 4,449,656
Xcc-8004.4668.1
Xcc-8004.4669.1: Xcc-8004.4669.1 - Transcriptional regulator NtrC family, at 4,449,653 to 4,450,936
Xcc-8004.4669.1
Xcc-8004.4671.1: Xcc-8004.4671.1 - FIG01212254: hypothetical protein, at 4,451,464 to 4,451,760
Xcc-8004.4671.1
Xcc-8004.4672.1: Xcc-8004.4672.1 - hypothetical protein, at 4,451,814 to 4,451,921
Xcc-8004.4672.1
Position (kb) 4449
4450
4451 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4448.800 kb on + strand at 4448.800 kb on + strand at 4448.800 kb on + strand at 4448.800 kb on + strand at 4448.800 kb on + strand at 4448.800 kb on + strand at 4448.801 kb on - strand at 4448.801 kb on - strand at 4448.801 kb on - strand at 4448.882 kb on + strand at 4448.882 kb on + strand at 4448.882 kb on + strand at 4448.882 kb on + strand at 4448.882 kb on + strand at 4448.882 kb on + strand at 4448.883 kb on - strand at 4448.883 kb on - strand at 4448.883 kb on - strand at 4448.883 kb on - strand at 4448.883 kb on - strand at 4448.883 kb on - strand at 4448.883 kb on - strand at 4448.889 kb on + strand at 4448.889 kb on + strand at 4448.889 kb on + strand at 4448.889 kb on + strand at 4448.889 kb on + strand at 4448.889 kb on + strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.890 kb on - strand at 4448.969 kb on + strand at 4448.969 kb on + strand at 4448.995 kb on + strand at 4448.995 kb on + strand at 4448.995 kb on + strand at 4448.995 kb on + strand at 4448.995 kb on + strand at 4448.995 kb on + strand at 4448.995 kb on + strand at 4448.996 kb on - strand at 4448.996 kb on - strand at 4448.996 kb on - strand at 4448.996 kb on - strand at 4449.019 kb on + strand at 4449.019 kb on + strand at 4449.019 kb on + strand at 4449.020 kb on - strand at 4449.027 kb on - strand at 4449.027 kb on - strand at 4449.027 kb on - strand at 4449.027 kb on - strand at 4449.035 kb on - strand at 4449.100 kb on + strand, within Xcc-8004.4667.1 at 4449.100 kb on + strand, within Xcc-8004.4667.1 at 4449.100 kb on + strand, within Xcc-8004.4667.1 at 4449.101 kb on - strand, within Xcc-8004.4667.1 at 4449.101 kb on - strand, within Xcc-8004.4667.1 at 4449.129 kb on - strand, within Xcc-8004.4667.1 at 4449.129 kb on - strand, within Xcc-8004.4667.1 at 4449.313 kb on + strand, within Xcc-8004.4667.1 at 4449.323 kb on - strand, within Xcc-8004.4667.1 at 4449.340 kb on + strand, within Xcc-8004.4667.1 at 4449.340 kb on + strand, within Xcc-8004.4667.1 at 4449.341 kb on - strand, within Xcc-8004.4667.1 at 4449.355 kb on + strand, within Xcc-8004.4667.1 at 4449.355 kb on + strand, within Xcc-8004.4667.1 at 4449.355 kb on + strand, within Xcc-8004.4667.1 at 4449.356 kb on - strand, within Xcc-8004.4667.1 at 4449.356 kb on - strand, within Xcc-8004.4667.1 at 4449.356 kb on - strand, within Xcc-8004.4667.1 at 4449.370 kb on + strand, within Xcc-8004.4667.1 at 4449.370 kb on + strand, within Xcc-8004.4667.1 at 4449.371 kb on - strand, within Xcc-8004.4667.1 at 4449.395 kb on + strand at 4449.395 kb on + strand at 4449.456 kb on + strand, within Xcc-8004.4668.1 at 4449.575 kb on - strand, within Xcc-8004.4668.1 at 4449.575 kb on - strand, within Xcc-8004.4668.1 at 4449.606 kb on - strand, within Xcc-8004.4668.1 at 4449.606 kb on - strand, within Xcc-8004.4668.1 at 4449.735 kb on + strand at 4449.736 kb on - strand at 4449.885 kb on + strand, within Xcc-8004.4669.1 at 4449.885 kb on + strand, within Xcc-8004.4669.1 at 4449.885 kb on + strand, within Xcc-8004.4669.1 at 4449.886 kb on - strand, within Xcc-8004.4669.1 at 4449.886 kb on - strand, within Xcc-8004.4669.1 at 4449.886 kb on - strand, within Xcc-8004.4669.1 at 4449.886 kb on - strand, within Xcc-8004.4669.1 at 4449.891 kb on + strand, within Xcc-8004.4669.1 at 4449.892 kb on - strand, within Xcc-8004.4669.1 at 4449.892 kb on - strand, within Xcc-8004.4669.1 at 4449.949 kb on - strand, within Xcc-8004.4669.1 at 4449.949 kb on - strand, within Xcc-8004.4669.1 at 4449.949 kb on - strand, within Xcc-8004.4669.1 at 4449.987 kb on + strand, within Xcc-8004.4669.1 at 4449.988 kb on - strand, within Xcc-8004.4669.1 at 4449.988 kb on - strand, within Xcc-8004.4669.1 at 4450.090 kb on - strand, within Xcc-8004.4669.1 at 4450.090 kb on - strand, within Xcc-8004.4669.1 at 4450.090 kb on - strand, within Xcc-8004.4669.1 at 4450.090 kb on - strand, within Xcc-8004.4669.1 at 4450.227 kb on + strand, within Xcc-8004.4669.1 at 4450.227 kb on + strand, within Xcc-8004.4669.1 at 4450.227 kb on + strand, within Xcc-8004.4669.1 at 4450.227 kb on + strand, within Xcc-8004.4669.1 at 4450.227 kb on + strand, within Xcc-8004.4669.1 at 4450.227 kb on + strand, within Xcc-8004.4669.1 at 4450.228 kb on - strand, within Xcc-8004.4669.1 at 4450.228 kb on - strand, within Xcc-8004.4669.1 at 4450.228 kb on - strand, within Xcc-8004.4669.1 at 4450.228 kb on - strand, within Xcc-8004.4669.1 at 4450.532 kb on + strand, within Xcc-8004.4669.1 at 4450.532 kb on + strand, within Xcc-8004.4669.1 at 4450.532 kb on + strand, within Xcc-8004.4669.1 at 4450.533 kb on - strand, within Xcc-8004.4669.1 at 4450.533 kb on - strand, within Xcc-8004.4669.1 at 4450.533 kb on - strand, within Xcc-8004.4669.1 at 4450.686 kb on + strand, within Xcc-8004.4669.1 at 4450.686 kb on + strand, within Xcc-8004.4669.1 at 4450.687 kb on - strand, within Xcc-8004.4669.1 at 4450.687 kb on - strand, within Xcc-8004.4669.1 at 4450.936 kb on + strand at 4450.936 kb on + strand at 4450.936 kb on + strand at 4450.936 kb on + strand at 4450.959 kb on + strand at 4450.959 kb on + strand at 4450.959 kb on + strand at 4450.959 kb on + strand at 4450.960 kb on - strand at 4450.960 kb on - strand at 4450.960 kb on - strand at 4450.962 kb on + strand at 4450.962 kb on + strand at 4450.962 kb on + strand at 4450.963 kb on - strand at 4450.963 kb on - strand at 4450.963 kb on - strand at 4451.072 kb on - strand at 4451.119 kb on + strand at 4451.119 kb on + strand at 4451.119 kb on + strand at 4451.119 kb on + strand at 4451.120 kb on - strand at 4451.180 kb on + strand at 4451.181 kb on - strand at 4451.358 kb on + strand at 4451.358 kb on + strand at 4451.358 kb on + strand at 4451.359 kb on - strand at 4451.369 kb on + strand at 4451.370 kb on - strand at 4451.395 kb on + strand at 4451.395 kb on + strand at 4451.395 kb on + strand at 4451.395 kb on + strand at 4451.395 kb on + strand at 4451.396 kb on - strand at 4451.396 kb on - strand at 4451.566 kb on + strand, within Xcc-8004.4671.1 at 4451.566 kb on + strand, within Xcc-8004.4671.1 at 4451.567 kb on - strand, within Xcc-8004.4671.1 at 4451.567 kb on - strand, within Xcc-8004.4671.1 at 4451.567 kb on - strand, within Xcc-8004.4671.1 at 4451.567 kb on - strand, within Xcc-8004.4671.1 at 4451.570 kb on - strand, within Xcc-8004.4671.1 at 4451.874 kb on + strand, within Xcc-8004.4672.1 at 4451.874 kb on + strand, within Xcc-8004.4672.1 at 4451.875 kb on - strand, within Xcc-8004.4672.1 at 4451.875 kb on - strand, within Xcc-8004.4672.1 at 4451.875 kb on - strand, within Xcc-8004.4672.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,448,800 + +0.0 4,448,800 + -0.7 4,448,800 + -0.8 4,448,800 + +0.3 4,448,800 + +0.5 4,448,800 + +0.3 4,448,801 - +0.9 4,448,801 - -0.9 4,448,801 - +1.1 4,448,882 + +0.7 4,448,882 + +0.1 4,448,882 + +0.4 4,448,882 + +0.6 4,448,882 + +0.6 4,448,882 + +0.4 4,448,883 - +0.1 4,448,883 - -0.1 4,448,883 - +0.6 4,448,883 - -0.0 4,448,883 - +0.2 4,448,883 - -0.4 4,448,883 - +0.3 4,448,889 + +1.0 4,448,889 + +0.1 4,448,889 + -0.4 4,448,889 + -1.3 4,448,889 + -0.6 4,448,889 + -0.2 4,448,890 - -0.2 4,448,890 - +0.3 4,448,890 - +1.4 4,448,890 - +1.7 4,448,890 - +1.2 4,448,890 - -1.3 4,448,890 - -0.1 4,448,890 - -0.1 4,448,890 - +0.4 4,448,890 - -0.1 4,448,890 - -1.6 4,448,890 - +0.8 4,448,969 + -1.9 4,448,969 + -1.2 4,448,995 + +0.9 4,448,995 + +0.9 4,448,995 + -0.6 4,448,995 + -1.0 4,448,995 + +1.2 4,448,995 + +0.1 4,448,995 + +0.2 4,448,996 - -0.1 4,448,996 - +1.1 4,448,996 - -0.1 4,448,996 - +0.2 4,449,019 + -0.5 4,449,019 + +0.3 4,449,019 + -0.1 4,449,020 - -1.1 4,449,027 - +0.4 4,449,027 - -1.0 4,449,027 - +0.6 4,449,027 - -0.1 4,449,035 - +0.1 4,449,100 + Xcc-8004.4667.1 0.13 +0.2 4,449,100 + Xcc-8004.4667.1 0.13 -1.4 4,449,100 + Xcc-8004.4667.1 0.13 -0.6 4,449,101 - Xcc-8004.4667.1 0.14 -0.4 4,449,101 - Xcc-8004.4667.1 0.14 +0.6 4,449,129 - Xcc-8004.4667.1 0.21 -0.5 4,449,129 - Xcc-8004.4667.1 0.21 +1.0 4,449,313 + Xcc-8004.4667.1 0.69 +1.0 4,449,323 - Xcc-8004.4667.1 0.71 -0.2 4,449,340 + Xcc-8004.4667.1 0.76 -0.2 4,449,340 + Xcc-8004.4667.1 0.76 +0.1 4,449,341 - Xcc-8004.4667.1 0.76 -0.3 4,449,355 + Xcc-8004.4667.1 0.80 -0.1 4,449,355 + Xcc-8004.4667.1 0.80 +0.3 4,449,355 + Xcc-8004.4667.1 0.80 +0.1 4,449,356 - Xcc-8004.4667.1 0.80 -0.4 4,449,356 - Xcc-8004.4667.1 0.80 -0.2 4,449,356 - Xcc-8004.4667.1 0.80 -1.4 4,449,370 + Xcc-8004.4667.1 0.84 -1.1 4,449,370 + Xcc-8004.4667.1 0.84 +1.2 4,449,371 - Xcc-8004.4667.1 0.84 +0.6 4,449,395 + -0.2 4,449,395 + -0.8 4,449,456 + Xcc-8004.4668.1 0.13 -0.1 4,449,575 - Xcc-8004.4668.1 0.65 +0.5 4,449,575 - Xcc-8004.4668.1 0.65 -0.4 4,449,606 - Xcc-8004.4668.1 0.78 -0.7 4,449,606 - Xcc-8004.4668.1 0.78 +0.2 4,449,735 + -0.9 4,449,736 - -2.0 4,449,885 + Xcc-8004.4669.1 0.18 -1.3 4,449,885 + Xcc-8004.4669.1 0.18 +0.3 4,449,885 + Xcc-8004.4669.1 0.18 -1.4 4,449,886 - Xcc-8004.4669.1 0.18 -2.1 4,449,886 - Xcc-8004.4669.1 0.18 -1.4 4,449,886 - Xcc-8004.4669.1 0.18 -2.5 4,449,886 - Xcc-8004.4669.1 0.18 -0.2 4,449,891 + Xcc-8004.4669.1 0.19 -0.6 4,449,892 - Xcc-8004.4669.1 0.19 -1.1 4,449,892 - Xcc-8004.4669.1 0.19 -1.6 4,449,949 - Xcc-8004.4669.1 0.23 -0.2 4,449,949 - Xcc-8004.4669.1 0.23 -2.4 4,449,949 - Xcc-8004.4669.1 0.23 -0.4 4,449,987 + Xcc-8004.4669.1 0.26 -0.1 4,449,988 - Xcc-8004.4669.1 0.26 -1.3 4,449,988 - Xcc-8004.4669.1 0.26 -1.5 4,450,090 - Xcc-8004.4669.1 0.34 -1.1 4,450,090 - Xcc-8004.4669.1 0.34 -1.9 4,450,090 - Xcc-8004.4669.1 0.34 -0.4 4,450,090 - Xcc-8004.4669.1 0.34 -0.5 4,450,227 + Xcc-8004.4669.1 0.45 -2.1 4,450,227 + Xcc-8004.4669.1 0.45 -2.7 4,450,227 + Xcc-8004.4669.1 0.45 -0.2 4,450,227 + Xcc-8004.4669.1 0.45 -1.3 4,450,227 + Xcc-8004.4669.1 0.45 -2.5 4,450,227 + Xcc-8004.4669.1 0.45 -1.3 4,450,228 - Xcc-8004.4669.1 0.45 -2.0 4,450,228 - Xcc-8004.4669.1 0.45 -2.5 4,450,228 - Xcc-8004.4669.1 0.45 +0.1 4,450,228 - Xcc-8004.4669.1 0.45 -0.9 4,450,532 + Xcc-8004.4669.1 0.68 -0.1 4,450,532 + Xcc-8004.4669.1 0.68 -0.5 4,450,532 + Xcc-8004.4669.1 0.68 +0.1 4,450,533 - Xcc-8004.4669.1 0.69 -2.1 4,450,533 - Xcc-8004.4669.1 0.69 -3.0 4,450,533 - Xcc-8004.4669.1 0.69 -0.7 4,450,686 + Xcc-8004.4669.1 0.80 -2.4 4,450,686 + Xcc-8004.4669.1 0.80 +0.0 4,450,687 - Xcc-8004.4669.1 0.81 -1.1 4,450,687 - Xcc-8004.4669.1 0.81 -1.1 4,450,936 + -2.6 4,450,936 + -1.6 4,450,936 + -0.9 4,450,936 + -1.7 4,450,959 + -1.8 4,450,959 + -1.4 4,450,959 + -0.2 4,450,959 + -0.4 4,450,960 - +1.0 4,450,960 - +0.3 4,450,960 - -0.3 4,450,962 + -2.0 4,450,962 + -1.8 4,450,962 + -1.7 4,450,963 - -1.4 4,450,963 - +1.5 4,450,963 - +0.7 4,451,072 - -0.0 4,451,119 + -0.2 4,451,119 + +0.2 4,451,119 + -2.3 4,451,119 + +0.3 4,451,120 - +0.2 4,451,180 + -0.3 4,451,181 - +0.8 4,451,358 + +1.0 4,451,358 + +0.4 4,451,358 + +1.1 4,451,359 - -0.1 4,451,369 + +0.5 4,451,370 - -1.3 4,451,395 + -2.5 4,451,395 + -0.6 4,451,395 + -0.6 4,451,395 + +1.1 4,451,395 + -0.5 4,451,396 - -0.3 4,451,396 - -1.0 4,451,566 + Xcc-8004.4671.1 0.34 -0.2 4,451,566 + Xcc-8004.4671.1 0.34 -1.4 4,451,567 - Xcc-8004.4671.1 0.35 +0.3 4,451,567 - Xcc-8004.4671.1 0.35 -0.7 4,451,567 - Xcc-8004.4671.1 0.35 +0.0 4,451,567 - Xcc-8004.4671.1 0.35 -1.0 4,451,570 - Xcc-8004.4671.1 0.36 +0.0 4,451,874 + Xcc-8004.4672.1 0.56 +1.3 4,451,874 + Xcc-8004.4672.1 0.56 -0.4 4,451,875 - Xcc-8004.4672.1 0.56 -1.2 4,451,875 - Xcc-8004.4672.1 0.56 +0.7 4,451,875 - Xcc-8004.4672.1 0.56 -0.1
Or see this region's nucleotide sequence