Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4604.1 and Xcc-8004.4605.1 are separated by 257 nucleotides Xcc-8004.4605.1 and Xcc-8004.4606.1 are separated by 55 nucleotides Xcc-8004.4606.1 and Xcc-8004.4607.1 are separated by 127 nucleotides
Xcc-8004.4604.1: Xcc-8004.4604.1 - hypothetical protein, at 4,388,540 to 4,389,448
Xcc-8004.4604.1
Xcc-8004.4605.1: Xcc-8004.4605.1 - FIG001943: hypothetical protein YajQ, at 4,389,706 to 4,390,191
Xcc-8004.4605.1
Xcc-8004.4606.1: Xcc-8004.4606.1 - FIG01210755: hypothetical protein, at 4,390,247 to 4,390,921
Xcc-8004.4606.1
Xcc-8004.4607.1: Xcc-8004.4607.1 - Histidinol phosphatase and related hydrolases of the PHP family, at 4,391,049 to 4,392,482
Xcc-8004.4607.1
Position (kb) 4390
4391 Strain fitness (log2 ratio) -2
-1
0
1 at 4389.334 kb on - strand, within Xcc-8004.4604.1 at 4389.578 kb on + strand at 4389.578 kb on + strand at 4389.578 kb on + strand at 4389.578 kb on + strand at 4389.579 kb on - strand at 4389.579 kb on - strand at 4389.579 kb on - strand at 4389.579 kb on - strand at 4389.579 kb on - strand at 4389.579 kb on - strand at 4389.579 kb on - strand at 4389.579 kb on - strand at 4389.671 kb on + strand at 4389.672 kb on - strand at 4390.136 kb on + strand, within Xcc-8004.4605.1 at 4390.136 kb on + strand, within Xcc-8004.4605.1 at 4390.137 kb on - strand, within Xcc-8004.4605.1 at 4390.327 kb on + strand, within Xcc-8004.4606.1 at 4390.327 kb on + strand, within Xcc-8004.4606.1 at 4390.327 kb on + strand, within Xcc-8004.4606.1 at 4390.327 kb on + strand, within Xcc-8004.4606.1 at 4390.328 kb on - strand, within Xcc-8004.4606.1 at 4390.328 kb on - strand, within Xcc-8004.4606.1 at 4390.328 kb on - strand, within Xcc-8004.4606.1 at 4390.328 kb on - strand, within Xcc-8004.4606.1 at 4390.328 kb on - strand, within Xcc-8004.4606.1 at 4390.328 kb on - strand, within Xcc-8004.4606.1 at 4390.463 kb on + strand, within Xcc-8004.4606.1 at 4390.464 kb on - strand, within Xcc-8004.4606.1 at 4390.625 kb on + strand, within Xcc-8004.4606.1 at 4390.625 kb on + strand, within Xcc-8004.4606.1 at 4390.626 kb on - strand, within Xcc-8004.4606.1 at 4390.626 kb on - strand, within Xcc-8004.4606.1 at 4390.626 kb on - strand, within Xcc-8004.4606.1 at 4390.626 kb on - strand, within Xcc-8004.4606.1 at 4390.712 kb on + strand, within Xcc-8004.4606.1 at 4390.935 kb on - strand at 4390.935 kb on - strand at 4390.935 kb on - strand at 4391.083 kb on + strand at 4391.083 kb on + strand at 4391.083 kb on + strand at 4391.083 kb on + strand at 4391.084 kb on - strand at 4391.084 kb on - strand at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.563 kb on + strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.564 kb on - strand, within Xcc-8004.4607.1 at 4391.575 kb on + strand, within Xcc-8004.4607.1 at 4391.575 kb on + strand, within Xcc-8004.4607.1 at 4391.576 kb on - strand, within Xcc-8004.4607.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,389,334 - Xcc-8004.4604.1 0.87 +0.5 4,389,578 + +1.5 4,389,578 + -0.8 4,389,578 + +0.5 4,389,578 + +0.5 4,389,579 - +0.9 4,389,579 - -0.5 4,389,579 - +0.8 4,389,579 - +0.1 4,389,579 - +0.6 4,389,579 - -0.9 4,389,579 - -0.4 4,389,579 - -0.6 4,389,671 + +0.7 4,389,672 - -0.5 4,390,136 + Xcc-8004.4605.1 0.88 +1.3 4,390,136 + Xcc-8004.4605.1 0.88 +0.1 4,390,137 - Xcc-8004.4605.1 0.89 -0.9 4,390,327 + Xcc-8004.4606.1 0.12 -1.0 4,390,327 + Xcc-8004.4606.1 0.12 -0.5 4,390,327 + Xcc-8004.4606.1 0.12 +0.6 4,390,327 + Xcc-8004.4606.1 0.12 +0.4 4,390,328 - Xcc-8004.4606.1 0.12 -0.3 4,390,328 - Xcc-8004.4606.1 0.12 -0.1 4,390,328 - Xcc-8004.4606.1 0.12 -2.0 4,390,328 - Xcc-8004.4606.1 0.12 -0.1 4,390,328 - Xcc-8004.4606.1 0.12 -0.8 4,390,328 - Xcc-8004.4606.1 0.12 -0.1 4,390,463 + Xcc-8004.4606.1 0.32 -0.1 4,390,464 - Xcc-8004.4606.1 0.32 -0.8 4,390,625 + Xcc-8004.4606.1 0.56 +0.1 4,390,625 + Xcc-8004.4606.1 0.56 -0.5 4,390,626 - Xcc-8004.4606.1 0.56 -1.4 4,390,626 - Xcc-8004.4606.1 0.56 -0.2 4,390,626 - Xcc-8004.4606.1 0.56 -0.9 4,390,626 - Xcc-8004.4606.1 0.56 +0.5 4,390,712 + Xcc-8004.4606.1 0.69 +0.5 4,390,935 - -1.8 4,390,935 - -1.1 4,390,935 - -2.0 4,391,083 + +0.2 4,391,083 + +0.7 4,391,083 + +0.6 4,391,083 + -0.4 4,391,084 - -1.5 4,391,084 - +0.9 4,391,563 + Xcc-8004.4607.1 0.36 -0.3 4,391,563 + Xcc-8004.4607.1 0.36 -1.1 4,391,563 + Xcc-8004.4607.1 0.36 +0.4 4,391,563 + Xcc-8004.4607.1 0.36 -0.0 4,391,563 + Xcc-8004.4607.1 0.36 -0.0 4,391,563 + Xcc-8004.4607.1 0.36 -1.8 4,391,563 + Xcc-8004.4607.1 0.36 +0.2 4,391,563 + Xcc-8004.4607.1 0.36 -0.4 4,391,563 + Xcc-8004.4607.1 0.36 +0.5 4,391,563 + Xcc-8004.4607.1 0.36 -1.3 4,391,563 + Xcc-8004.4607.1 0.36 +0.2 4,391,563 + Xcc-8004.4607.1 0.36 -0.2 4,391,563 + Xcc-8004.4607.1 0.36 -0.6 4,391,564 - Xcc-8004.4607.1 0.36 -1.0 4,391,564 - Xcc-8004.4607.1 0.36 -1.2 4,391,564 - Xcc-8004.4607.1 0.36 +0.2 4,391,564 - Xcc-8004.4607.1 0.36 -1.8 4,391,564 - Xcc-8004.4607.1 0.36 +0.3 4,391,564 - Xcc-8004.4607.1 0.36 +0.6 4,391,564 - Xcc-8004.4607.1 0.36 +0.9 4,391,564 - Xcc-8004.4607.1 0.36 -0.9 4,391,564 - Xcc-8004.4607.1 0.36 -0.6 4,391,564 - Xcc-8004.4607.1 0.36 +0.0 4,391,564 - Xcc-8004.4607.1 0.36 -0.6 4,391,564 - Xcc-8004.4607.1 0.36 +0.1 4,391,564 - Xcc-8004.4607.1 0.36 -0.1 4,391,575 + Xcc-8004.4607.1 0.37 -1.9 4,391,575 + Xcc-8004.4607.1 0.37 -0.7 4,391,576 - Xcc-8004.4607.1 0.37 -0.5
Or see this region's nucleotide sequence