Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.455.1 and Xcc-8004.456.1 are separated by 81 nucleotides Xcc-8004.456.1 and Xcc-8004.458.1 are separated by 491 nucleotides Xcc-8004.458.1 and Xcc-8004.459.1 are separated by 24 nucleotides
Xcc-8004.455.1: Xcc-8004.455.1 - Putative inner membrane protein, at 418,002 to 418,898
Xcc-8004.455.1
Xcc-8004.456.1: Xcc-8004.456.1 - carbonic anhydrase, family 3, at 418,980 to 419,540
Xcc-8004.456.1
Xcc-8004.458.1: Xcc-8004.458.1 - hypothetical protein, at 420,032 to 420,388
Xcc-8004.458.1
Xcc-8004.459.1: Xcc-8004.459.1 - 4-hydroxybenzoate transporter, at 420,413 to 421,723
Xcc-8004.459.1
Position (kb) 418
419
420 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 418.171 kb on + strand, within Xcc-8004.455.1 at 418.171 kb on + strand, within Xcc-8004.455.1 at 418.171 kb on + strand, within Xcc-8004.455.1 at 418.171 kb on + strand, within Xcc-8004.455.1 at 418.171 kb on + strand, within Xcc-8004.455.1 at 418.172 kb on - strand, within Xcc-8004.455.1 at 418.172 kb on - strand, within Xcc-8004.455.1 at 418.172 kb on - strand, within Xcc-8004.455.1 at 418.172 kb on - strand, within Xcc-8004.455.1 at 418.313 kb on - strand, within Xcc-8004.455.1 at 418.342 kb on + strand, within Xcc-8004.455.1 at 418.394 kb on - strand, within Xcc-8004.455.1 at 418.459 kb on + strand, within Xcc-8004.455.1 at 418.460 kb on - strand, within Xcc-8004.455.1 at 418.529 kb on - strand, within Xcc-8004.455.1 at 418.561 kb on + strand, within Xcc-8004.455.1 at 418.561 kb on + strand, within Xcc-8004.455.1 at 418.561 kb on + strand, within Xcc-8004.455.1 at 418.561 kb on + strand, within Xcc-8004.455.1 at 418.561 kb on + strand, within Xcc-8004.455.1 at 418.562 kb on - strand, within Xcc-8004.455.1 at 418.562 kb on - strand, within Xcc-8004.455.1 at 418.562 kb on - strand, within Xcc-8004.455.1 at 418.562 kb on - strand, within Xcc-8004.455.1 at 418.574 kb on + strand, within Xcc-8004.455.1 at 418.576 kb on + strand, within Xcc-8004.455.1 at 418.576 kb on + strand, within Xcc-8004.455.1 at 418.576 kb on + strand, within Xcc-8004.455.1 at 418.576 kb on + strand, within Xcc-8004.455.1 at 418.577 kb on - strand, within Xcc-8004.455.1 at 418.577 kb on - strand, within Xcc-8004.455.1 at 418.711 kb on + strand, within Xcc-8004.455.1 at 418.712 kb on - strand, within Xcc-8004.455.1 at 419.026 kb on + strand at 419.026 kb on + strand at 419.027 kb on - strand at 419.027 kb on - strand at 419.041 kb on + strand, within Xcc-8004.456.1 at 419.041 kb on + strand, within Xcc-8004.456.1 at 419.042 kb on - strand, within Xcc-8004.456.1 at 419.544 kb on - strand at 419.577 kb on + strand at 419.577 kb on + strand at 419.578 kb on - strand at 419.694 kb on + strand at 419.728 kb on - strand at 419.833 kb on - strand at 419.889 kb on + strand at 419.910 kb on + strand at 419.911 kb on - strand at 419.911 kb on - strand at 419.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 418,171 + Xcc-8004.455.1 0.19 -0.5 418,171 + Xcc-8004.455.1 0.19 -0.0 418,171 + Xcc-8004.455.1 0.19 +0.5 418,171 + Xcc-8004.455.1 0.19 -0.9 418,171 + Xcc-8004.455.1 0.19 +1.4 418,172 - Xcc-8004.455.1 0.19 -2.4 418,172 - Xcc-8004.455.1 0.19 +0.4 418,172 - Xcc-8004.455.1 0.19 -0.0 418,172 - Xcc-8004.455.1 0.19 +0.2 418,313 - Xcc-8004.455.1 0.35 -2.5 418,342 + Xcc-8004.455.1 0.38 -0.8 418,394 - Xcc-8004.455.1 0.44 -0.5 418,459 + Xcc-8004.455.1 0.51 +0.3 418,460 - Xcc-8004.455.1 0.51 -1.1 418,529 - Xcc-8004.455.1 0.59 -0.2 418,561 + Xcc-8004.455.1 0.62 -0.6 418,561 + Xcc-8004.455.1 0.62 +0.6 418,561 + Xcc-8004.455.1 0.62 +1.1 418,561 + Xcc-8004.455.1 0.62 -0.4 418,561 + Xcc-8004.455.1 0.62 -0.0 418,562 - Xcc-8004.455.1 0.62 -2.2 418,562 - Xcc-8004.455.1 0.62 -0.5 418,562 - Xcc-8004.455.1 0.62 -0.0 418,562 - Xcc-8004.455.1 0.62 -0.3 418,574 + Xcc-8004.455.1 0.64 +1.4 418,576 + Xcc-8004.455.1 0.64 +0.1 418,576 + Xcc-8004.455.1 0.64 -1.0 418,576 + Xcc-8004.455.1 0.64 +2.8 418,576 + Xcc-8004.455.1 0.64 +0.3 418,577 - Xcc-8004.455.1 0.64 +0.3 418,577 - Xcc-8004.455.1 0.64 +0.0 418,711 + Xcc-8004.455.1 0.79 -1.4 418,712 - Xcc-8004.455.1 0.79 -0.5 419,026 + -0.1 419,026 + +0.2 419,027 - -2.1 419,027 - +0.2 419,041 + Xcc-8004.456.1 0.11 +0.6 419,041 + Xcc-8004.456.1 0.11 -1.4 419,042 - Xcc-8004.456.1 0.11 -0.8 419,544 - -1.0 419,577 + -0.8 419,577 + +0.7 419,578 - +0.5 419,694 + -0.5 419,728 - +0.3 419,833 - +1.3 419,889 + -0.5 419,910 + +0.4 419,911 - +1.9 419,911 - -2.2 419,911 - +1.0
Or see this region's nucleotide sequence