Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4558.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4557.1 and Xcc-8004.4558.1 are separated by 63 nucleotidesXcc-8004.4558.1 and Xcc-8004.4559.1 are separated by 119 nucleotidesXcc-8004.4559.1 and Xcc-8004.4560.1 are separated by 89 nucleotides Xcc-8004.4557.1: Xcc-8004.4557.1 - ABC transporter ATP-binding protein, at 4,352,914 to 4,354,206 Xcc-8004.4557.1 Xcc-8004.4558.1: Xcc-8004.4558.1 - ABC transporter permease, at 4,354,270 to 4,355,478 Xcc-8004.4558.1 Xcc-8004.4559.1: Xcc-8004.4559.1 - FIG01210482: hypothetical protein, at 4,355,598 to 4,356,068 Xcc-8004.4559.1 Xcc-8004.4560.1: Xcc-8004.4560.1 - Histidine kinase/response regulator hybrid protein, at 4,356,158 to 4,357,585 Xcc-8004.4560.1 Position (kb) 4354 4355 4356Strain fitness (log2 ratio) -3 -2 -1 0 1at 4353.271 kb on + strand, within Xcc-8004.4557.1at 4353.271 kb on + strand, within Xcc-8004.4557.1at 4353.316 kb on + strand, within Xcc-8004.4557.1at 4353.465 kb on + strand, within Xcc-8004.4557.1at 4353.691 kb on + strand, within Xcc-8004.4557.1at 4353.701 kb on - strand, within Xcc-8004.4557.1at 4353.701 kb on - strand, within Xcc-8004.4557.1at 4354.561 kb on + strand, within Xcc-8004.4558.1at 4354.636 kb on + strand, within Xcc-8004.4558.1at 4354.714 kb on - strand, within Xcc-8004.4558.1at 4354.728 kb on + strand, within Xcc-8004.4558.1at 4354.952 kb on - strand, within Xcc-8004.4558.1at 4355.588 kb on + strandat 4355.911 kb on + strand, within Xcc-8004.4559.1at 4355.963 kb on - strand, within Xcc-8004.4559.1at 4356.006 kb on + strand, within Xcc-8004.4559.1at 4356.007 kb on - strand, within Xcc-8004.4559.1at 4356.007 kb on - strand, within Xcc-8004.4559.1at 4356.067 kb on - strandat 4356.112 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,353,271 + Xcc-8004.4557.1 0.28 +1.5
4,353,271 + Xcc-8004.4557.1 0.28 -0.2
4,353,316 + Xcc-8004.4557.1 0.31 -0.2
4,353,465 + Xcc-8004.4557.1 0.43 -2.1
4,353,691 + Xcc-8004.4557.1 0.60 +1.1
4,353,701 - Xcc-8004.4557.1 0.61 -2.3
4,353,701 - Xcc-8004.4557.1 0.61 +0.5
4,354,561 + Xcc-8004.4558.1 0.24 +0.6
4,354,636 + Xcc-8004.4558.1 0.30 -1.3
4,354,714 - Xcc-8004.4558.1 0.37 +0.2
4,354,728 + Xcc-8004.4558.1 0.38 -0.5
4,354,952 - Xcc-8004.4558.1 0.56 -2.8
4,355,588 + -1.2
4,355,911 + Xcc-8004.4559.1 0.66 +0.1
4,355,963 - Xcc-8004.4559.1 0.77 -0.5
4,356,006 + Xcc-8004.4559.1 0.87 +0.1
4,356,007 - Xcc-8004.4559.1 0.87 +0.2
4,356,007 - Xcc-8004.4559.1 0.87 -0.6
4,356,067 - -0.1
4,356,112 - -1.0

Or see this region's nucleotide sequence