Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4537.1 and Xcc-8004.4538.1 are separated by 473 nucleotides Xcc-8004.4538.1 and Xcc-8004.4539.1 are separated by 11 nucleotides
Xcc-8004.4537.1: Xcc-8004.4537.1 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41), at 4,333,097 to 4,334,305
Xcc-8004.4537.1
Xcc-8004.4538.1: Xcc-8004.4538.1 - hypothetical protein, at 4,334,779 to 4,334,916
Xcc-8004.4538.1
Xcc-8004.4539.1: Xcc-8004.4539.1 - Oligopeptidase A (EC 3.4.24.70), at 4,334,928 to 4,336,952
Xcc-8004.4539.1
Position (kb) 4334
4335 Strain fitness (log2 ratio) -1
0
1
2 at 4333.868 kb on + strand, within Xcc-8004.4537.1 at 4334.123 kb on + strand, within Xcc-8004.4537.1 at 4334.123 kb on + strand, within Xcc-8004.4537.1 at 4334.123 kb on + strand, within Xcc-8004.4537.1 at 4334.124 kb on - strand, within Xcc-8004.4537.1 at 4334.218 kb on + strand at 4334.218 kb on + strand at 4334.303 kb on + strand at 4334.303 kb on + strand at 4334.304 kb on - strand at 4334.304 kb on - strand at 4334.431 kb on + strand at 4334.431 kb on + strand at 4334.431 kb on + strand at 4334.432 kb on - strand at 4334.432 kb on - strand at 4334.432 kb on - strand at 4334.538 kb on + strand at 4334.538 kb on + strand at 4334.538 kb on + strand at 4334.538 kb on + strand at 4334.539 kb on - strand at 4334.539 kb on - strand at 4334.539 kb on - strand at 4334.539 kb on - strand at 4334.623 kb on - strand at 4334.623 kb on - strand at 4334.623 kb on - strand at 4334.727 kb on + strand at 4334.738 kb on - strand at 4334.738 kb on - strand at 4334.738 kb on - strand at 4334.781 kb on - strand at 4334.844 kb on - strand, within Xcc-8004.4538.1 at 4334.844 kb on - strand, within Xcc-8004.4538.1 at 4335.097 kb on + strand at 4335.130 kb on + strand at 4335.130 kb on + strand at 4335.130 kb on + strand at 4335.131 kb on - strand, within Xcc-8004.4539.1 at 4335.131 kb on - strand, within Xcc-8004.4539.1 at 4335.131 kb on - strand, within Xcc-8004.4539.1 at 4335.136 kb on + strand, within Xcc-8004.4539.1 at 4335.137 kb on - strand, within Xcc-8004.4539.1 at 4335.137 kb on - strand, within Xcc-8004.4539.1 at 4335.140 kb on - strand, within Xcc-8004.4539.1 at 4335.640 kb on + strand, within Xcc-8004.4539.1 at 4335.640 kb on + strand, within Xcc-8004.4539.1 at 4335.641 kb on - strand, within Xcc-8004.4539.1 at 4335.730 kb on + strand, within Xcc-8004.4539.1 at 4335.730 kb on + strand, within Xcc-8004.4539.1 at 4335.848 kb on + strand, within Xcc-8004.4539.1 at 4335.849 kb on - strand, within Xcc-8004.4539.1 at 4335.849 kb on - strand, within Xcc-8004.4539.1 at 4335.895 kb on + strand, within Xcc-8004.4539.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,333,868 + Xcc-8004.4537.1 0.64 +2.0 4,334,123 + Xcc-8004.4537.1 0.85 -0.3 4,334,123 + Xcc-8004.4537.1 0.85 +0.3 4,334,123 + Xcc-8004.4537.1 0.85 +0.4 4,334,124 - Xcc-8004.4537.1 0.85 -0.4 4,334,218 + -0.4 4,334,218 + -0.5 4,334,303 + +0.2 4,334,303 + +0.3 4,334,304 - +0.9 4,334,304 - -0.4 4,334,431 + -1.7 4,334,431 + -0.8 4,334,431 + +0.7 4,334,432 - +0.6 4,334,432 - -1.0 4,334,432 - +0.8 4,334,538 + -0.6 4,334,538 + +0.2 4,334,538 + -0.9 4,334,538 + +0.4 4,334,539 - -0.7 4,334,539 - +0.4 4,334,539 - -0.3 4,334,539 - +0.3 4,334,623 - +0.1 4,334,623 - +1.0 4,334,623 - -0.6 4,334,727 + -0.0 4,334,738 - -0.0 4,334,738 - -0.4 4,334,738 - -0.3 4,334,781 - +1.0 4,334,844 - Xcc-8004.4538.1 0.47 -0.8 4,334,844 - Xcc-8004.4538.1 0.47 -0.3 4,335,097 + -0.5 4,335,130 + +0.5 4,335,130 + +0.9 4,335,130 + +0.4 4,335,131 - Xcc-8004.4539.1 0.10 +0.2 4,335,131 - Xcc-8004.4539.1 0.10 -0.2 4,335,131 - Xcc-8004.4539.1 0.10 -1.3 4,335,136 + Xcc-8004.4539.1 0.10 +0.2 4,335,137 - Xcc-8004.4539.1 0.10 +0.4 4,335,137 - Xcc-8004.4539.1 0.10 +0.5 4,335,140 - Xcc-8004.4539.1 0.10 +2.5 4,335,640 + Xcc-8004.4539.1 0.35 -0.8 4,335,640 + Xcc-8004.4539.1 0.35 +1.4 4,335,641 - Xcc-8004.4539.1 0.35 +0.4 4,335,730 + Xcc-8004.4539.1 0.40 +0.3 4,335,730 + Xcc-8004.4539.1 0.40 +2.5 4,335,848 + Xcc-8004.4539.1 0.45 -1.0 4,335,849 - Xcc-8004.4539.1 0.45 -1.2 4,335,849 - Xcc-8004.4539.1 0.45 +0.0 4,335,895 + Xcc-8004.4539.1 0.48 -0.3
Or see this region's nucleotide sequence