Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4529.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
4,326,934	+		Xcc-8004.4527.1	0.81	-0.4
4,327,193	-				-0.5
4,327,315	+				-0.8
4,327,315	+				-2.2
4,327,315	+				-0.1
4,327,315	+				+0.6
4,327,316	-				+1.2
4,327,316	-				+0.9
4,327,316	-				+0.7
4,327,316	-				-0.5
4,327,326	+				-1.6
4,327,326	+				+0.8
4,327,327	-				+0.2
4,327,327	-				-0.1
4,327,327	-				+0.3
4,327,327	-				-1.2
4,327,327	-				+1.3
4,327,327	-				+1.0
4,327,327	-				+0.9
4,327,331	-				+0.9
4,327,331	-				-0.3
4,327,375	+		Xcc-8004.4528.1	0.18	+0.5
4,327,375	+		Xcc-8004.4528.1	0.18	-1.0
4,327,375	+		Xcc-8004.4528.1	0.18	+0.2
4,327,375	+		Xcc-8004.4528.1	0.18	-1.2
4,327,375	+		Xcc-8004.4528.1	0.18	-1.1
4,327,375	+		Xcc-8004.4528.1	0.18	-0.5
4,327,375	+		Xcc-8004.4528.1	0.18	-1.3
4,327,375	+		Xcc-8004.4528.1	0.18	-1.1
4,327,375	+		Xcc-8004.4528.1	0.18	+0.1
4,327,376	-		Xcc-8004.4528.1	0.19	+0.2
4,327,376	-		Xcc-8004.4528.1	0.19	+1.3
4,327,376	-		Xcc-8004.4528.1	0.19	+1.0
4,327,376	-		Xcc-8004.4528.1	0.19	-0.0
4,327,376	-		Xcc-8004.4528.1	0.19	+0.7
4,327,376	-		Xcc-8004.4528.1	0.19	+0.8
4,327,376	-		Xcc-8004.4528.1	0.19	-0.4
4,327,496	+		Xcc-8004.4528.1	0.53	-0.0
4,327,496	+		Xcc-8004.4528.1	0.53	+0.3
4,327,496	+		Xcc-8004.4528.1	0.53	-0.7
4,327,496	+		Xcc-8004.4528.1	0.53	-0.5
4,327,497	-		Xcc-8004.4528.1	0.53	-2.6
4,327,497	-		Xcc-8004.4528.1	0.53	-0.1
4,327,497	-		Xcc-8004.4528.1	0.53	+0.2
4,327,497	-		Xcc-8004.4528.1	0.53	-1.0
4,327,497	-		Xcc-8004.4528.1	0.53	-1.6
4,327,497	-		Xcc-8004.4528.1	0.53	+0.8
4,327,497	-		Xcc-8004.4528.1	0.53	-0.8
4,327,517	+		Xcc-8004.4528.1	0.58	-0.1
4,327,517	+		Xcc-8004.4528.1	0.58	-0.0
4,327,517	+		Xcc-8004.4528.1	0.58	-1.0
4,327,517	+		Xcc-8004.4528.1	0.58	+0.7
4,327,517	+		Xcc-8004.4528.1	0.58	-0.2
4,327,517	+		Xcc-8004.4528.1	0.58	+0.1
4,327,517	+		Xcc-8004.4528.1	0.58	+0.8
4,327,517	+		Xcc-8004.4528.1	0.58	+1.0
4,327,517	+		Xcc-8004.4528.1	0.58	-0.1
4,327,517	+		Xcc-8004.4528.1	0.58	+0.8
4,327,517	+		Xcc-8004.4528.1	0.58	+0.4
4,327,517	+		Xcc-8004.4528.1	0.58	-1.1
4,327,518	-		Xcc-8004.4528.1	0.59	-2.1
4,327,518	-		Xcc-8004.4528.1	0.59	-1.5
4,327,518	-		Xcc-8004.4528.1	0.59	-0.6
4,327,518	-		Xcc-8004.4528.1	0.59	+0.8
4,327,518	-		Xcc-8004.4528.1	0.59	+0.4
4,327,518	-		Xcc-8004.4528.1	0.59	+0.8
4,327,805	+				+0.4
4,328,003	+		Xcc-8004.4529.1	0.45	-0.6
4,328,003	+		Xcc-8004.4529.1	0.45	-2.1
4,328,186	+				+0.1
4,328,186	+				-0.5
4,328,186	+				+0.7
4,328,186	+				+0.1
4,328,186	+				+1.0
4,328,187	-				-0.5
4,328,275	-				+0.2
4,328,275	-				+0.7
4,328,790	+		Xcc-8004.4530.1	0.66	-1.5
4,328,791	-		Xcc-8004.4530.1	0.67	+0.6
4,328,791	-		Xcc-8004.4530.1	0.67	-0.6
4,328,791	-		Xcc-8004.4530.1	0.67	+0.6
4,328,808	+		Xcc-8004.4530.1	0.69	-1.5
4,328,808	+		Xcc-8004.4530.1	0.69	+0.4
4,328,809	-		Xcc-8004.4530.1	0.69	+1.5
4,328,809	-		Xcc-8004.4530.1	0.69	+0.8
4,328,997	+				-0.1
4,328,997	+				-0.4
4,328,997	+				-0.7
4,328,997	+				+0.6
4,328,997	+				+0.6
4,328,998	-				-0.7
4,328,998	-				+0.6
4,328,998	-				-1.3
4,328,998	-				+0.1
4,328,998	-				+1.5
4,328,998	-				+1.0
4,328,998	-				+1.8
4,328,998	-				-1.2
4,329,066	+				+1.1
4,329,066	+				-0.5