Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4481.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4480.1 and Xcc-8004.4481.1 are separated by 45 nucleotidesXcc-8004.4481.1 and Xcc-8004.4483.1 are separated by 121 nucleotides Xcc-8004.4480.1: Xcc-8004.4480.1 - Phosphomannomutase (EC 5.4.2.8), at 4,289,029 to 4,290,375 Xcc-8004.4480.1 Xcc-8004.4481.1: Xcc-8004.4481.1 - hypothetical protein, at 4,290,421 to 4,291,824 Xcc-8004.4481.1 Xcc-8004.4483.1: Xcc-8004.4483.1 - dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133), at 4,291,946 to 4,292,854 Xcc-8004.4483.1 Position (kb) 4290 4291 4292Strain fitness (log2 ratio) -3 -2 -1 0 1at 4289.503 kb on + strand, within Xcc-8004.4480.1at 4289.503 kb on + strand, within Xcc-8004.4480.1at 4289.503 kb on + strand, within Xcc-8004.4480.1at 4289.503 kb on + strand, within Xcc-8004.4480.1at 4289.504 kb on - strand, within Xcc-8004.4480.1at 4289.504 kb on - strand, within Xcc-8004.4480.1at 4289.504 kb on - strand, within Xcc-8004.4480.1at 4289.504 kb on - strand, within Xcc-8004.4480.1at 4289.504 kb on - strand, within Xcc-8004.4480.1at 4289.504 kb on - strand, within Xcc-8004.4480.1at 4289.504 kb on - strand, within Xcc-8004.4480.1at 4289.504 kb on - strand, within Xcc-8004.4480.1at 4289.507 kb on + strand, within Xcc-8004.4480.1at 4289.507 kb on + strand, within Xcc-8004.4480.1at 4289.507 kb on + strand, within Xcc-8004.4480.1at 4289.508 kb on - strand, within Xcc-8004.4480.1at 4289.508 kb on - strand, within Xcc-8004.4480.1at 4289.508 kb on - strand, within Xcc-8004.4480.1at 4289.508 kb on - strand, within Xcc-8004.4480.1at 4289.508 kb on - strand, within Xcc-8004.4480.1at 4289.794 kb on + strand, within Xcc-8004.4480.1at 4289.794 kb on + strand, within Xcc-8004.4480.1at 4289.794 kb on + strand, within Xcc-8004.4480.1at 4289.795 kb on - strand, within Xcc-8004.4480.1at 4289.795 kb on - strand, within Xcc-8004.4480.1at 4289.795 kb on - strand, within Xcc-8004.4480.1at 4289.797 kb on + strand, within Xcc-8004.4480.1at 4289.797 kb on + strand, within Xcc-8004.4480.1at 4289.797 kb on + strand, within Xcc-8004.4480.1at 4289.798 kb on - strand, within Xcc-8004.4480.1at 4289.798 kb on - strand, within Xcc-8004.4480.1at 4289.798 kb on - strand, within Xcc-8004.4480.1at 4289.798 kb on - strand, within Xcc-8004.4480.1at 4289.798 kb on - strand, within Xcc-8004.4480.1at 4289.977 kb on + strand, within Xcc-8004.4480.1at 4289.977 kb on + strand, within Xcc-8004.4480.1at 4289.977 kb on + strand, within Xcc-8004.4480.1at 4289.977 kb on + strand, within Xcc-8004.4480.1at 4289.977 kb on + strand, within Xcc-8004.4480.1at 4289.978 kb on - strand, within Xcc-8004.4480.1at 4289.978 kb on - strand, within Xcc-8004.4480.1at 4289.978 kb on - strand, within Xcc-8004.4480.1at 4290.005 kb on - strand, within Xcc-8004.4480.1at 4290.005 kb on - strand, within Xcc-8004.4480.1at 4290.005 kb on - strand, within Xcc-8004.4480.1at 4290.005 kb on - strand, within Xcc-8004.4480.1at 4290.023 kb on - strand, within Xcc-8004.4480.1at 4290.193 kb on + strand, within Xcc-8004.4480.1at 4290.193 kb on + strand, within Xcc-8004.4480.1at 4290.194 kb on - strand, within Xcc-8004.4480.1at 4290.220 kb on + strand, within Xcc-8004.4480.1at 4290.221 kb on - strand, within Xcc-8004.4480.1at 4290.221 kb on - strand, within Xcc-8004.4480.1at 4290.221 kb on - strand, within Xcc-8004.4480.1at 4290.365 kb on + strandat 4290.366 kb on - strandat 4290.378 kb on + strandat 4290.378 kb on + strandat 4290.379 kb on - strandat 4290.379 kb on - strandat 4290.494 kb on - strandat 4290.880 kb on + strand, within Xcc-8004.4481.1at 4290.880 kb on + strand, within Xcc-8004.4481.1at 4290.886 kb on + strand, within Xcc-8004.4481.1at 4290.886 kb on + strand, within Xcc-8004.4481.1at 4290.886 kb on + strand, within Xcc-8004.4481.1at 4290.887 kb on - strand, within Xcc-8004.4481.1at 4290.887 kb on - strand, within Xcc-8004.4481.1at 4290.967 kb on + strand, within Xcc-8004.4481.1at 4290.968 kb on - strand, within Xcc-8004.4481.1at 4290.986 kb on - strand, within Xcc-8004.4481.1at 4290.986 kb on - strand, within Xcc-8004.4481.1at 4290.988 kb on + strand, within Xcc-8004.4481.1at 4290.989 kb on - strand, within Xcc-8004.4481.1at 4290.989 kb on - strand, within Xcc-8004.4481.1at 4291.027 kb on + strand, within Xcc-8004.4481.1at 4291.027 kb on + strand, within Xcc-8004.4481.1at 4291.166 kb on - strand, within Xcc-8004.4481.1at 4291.324 kb on + strand, within Xcc-8004.4481.1at 4291.324 kb on + strand, within Xcc-8004.4481.1at 4291.324 kb on + strand, within Xcc-8004.4481.1at 4291.496 kb on - strand, within Xcc-8004.4481.1at 4291.496 kb on - strand, within Xcc-8004.4481.1at 4291.513 kb on + strand, within Xcc-8004.4481.1at 4291.513 kb on + strand, within Xcc-8004.4481.1at 4291.687 kb on - strandat 4291.687 kb on - strandat 4291.687 kb on - strandat 4291.690 kb on + strandat 4291.690 kb on + strandat 4291.690 kb on + strandat 4291.690 kb on + strandat 4291.690 kb on + strandat 4291.690 kb on + strandat 4291.691 kb on - strandat 4291.691 kb on - strandat 4291.691 kb on - strandat 4291.691 kb on - strandat 4291.691 kb on - strandat 4291.771 kb on + strandat 4291.771 kb on + strandat 4291.789 kb on - strandat 4291.806 kb on + strandat 4291.807 kb on - strandat 4291.810 kb on + strandat 4291.810 kb on + strandat 4291.810 kb on + strandat 4291.810 kb on + strandat 4291.810 kb on + strandat 4291.811 kb on - strandat 4291.811 kb on - strandat 4291.811 kb on - strandat 4291.811 kb on - strandat 4291.818 kb on + strandat 4291.818 kb on + strandat 4291.842 kb on + strandat 4291.843 kb on - strandat 4291.843 kb on - strandat 4291.843 kb on - strandat 4291.843 kb on - strandat 4291.947 kb on + strandat 4291.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,289,503 + Xcc-8004.4480.1 0.35 -1.3
4,289,503 + Xcc-8004.4480.1 0.35 -0.7
4,289,503 + Xcc-8004.4480.1 0.35 -1.1
4,289,503 + Xcc-8004.4480.1 0.35 -1.3
4,289,504 - Xcc-8004.4480.1 0.35 +0.5
4,289,504 - Xcc-8004.4480.1 0.35 -3.2
4,289,504 - Xcc-8004.4480.1 0.35 -3.0
4,289,504 - Xcc-8004.4480.1 0.35 -0.3
4,289,504 - Xcc-8004.4480.1 0.35 +0.7
4,289,504 - Xcc-8004.4480.1 0.35 -0.1
4,289,504 - Xcc-8004.4480.1 0.35 -0.9
4,289,504 - Xcc-8004.4480.1 0.35 -0.5
4,289,507 + Xcc-8004.4480.1 0.35 +1.3
4,289,507 + Xcc-8004.4480.1 0.35 -0.1
4,289,507 + Xcc-8004.4480.1 0.35 -2.5
4,289,508 - Xcc-8004.4480.1 0.36 -1.5
4,289,508 - Xcc-8004.4480.1 0.36 -2.7
4,289,508 - Xcc-8004.4480.1 0.36 -1.9
4,289,508 - Xcc-8004.4480.1 0.36 +1.1
4,289,508 - Xcc-8004.4480.1 0.36 -0.2
4,289,794 + Xcc-8004.4480.1 0.57 -1.3
4,289,794 + Xcc-8004.4480.1 0.57 -0.2
4,289,794 + Xcc-8004.4480.1 0.57 -0.6
4,289,795 - Xcc-8004.4480.1 0.57 -1.4
4,289,795 - Xcc-8004.4480.1 0.57 -1.3
4,289,795 - Xcc-8004.4480.1 0.57 -0.2
4,289,797 + Xcc-8004.4480.1 0.57 -1.6
4,289,797 + Xcc-8004.4480.1 0.57 -1.8
4,289,797 + Xcc-8004.4480.1 0.57 -0.4
4,289,798 - Xcc-8004.4480.1 0.57 -1.4
4,289,798 - Xcc-8004.4480.1 0.57 -0.8
4,289,798 - Xcc-8004.4480.1 0.57 -2.6
4,289,798 - Xcc-8004.4480.1 0.57 -1.2
4,289,798 - Xcc-8004.4480.1 0.57 -1.3
4,289,977 + Xcc-8004.4480.1 0.70 -0.7
4,289,977 + Xcc-8004.4480.1 0.70 +0.7
4,289,977 + Xcc-8004.4480.1 0.70 -1.7
4,289,977 + Xcc-8004.4480.1 0.70 -0.5
4,289,977 + Xcc-8004.4480.1 0.70 -0.5
4,289,978 - Xcc-8004.4480.1 0.70 -0.2
4,289,978 - Xcc-8004.4480.1 0.70 -2.1
4,289,978 - Xcc-8004.4480.1 0.70 -2.2
4,290,005 - Xcc-8004.4480.1 0.72 -1.0
4,290,005 - Xcc-8004.4480.1 0.72 -2.0
4,290,005 - Xcc-8004.4480.1 0.72 -0.9
4,290,005 - Xcc-8004.4480.1 0.72 -0.4
4,290,023 - Xcc-8004.4480.1 0.74 -0.6
4,290,193 + Xcc-8004.4480.1 0.86 -0.5
4,290,193 + Xcc-8004.4480.1 0.86 -1.4
4,290,194 - Xcc-8004.4480.1 0.86 +0.3
4,290,220 + Xcc-8004.4480.1 0.88 -1.4
4,290,221 - Xcc-8004.4480.1 0.88 +0.2
4,290,221 - Xcc-8004.4480.1 0.88 -1.0
4,290,221 - Xcc-8004.4480.1 0.88 -1.3
4,290,365 + -0.8
4,290,366 - -0.3
4,290,378 + +1.2
4,290,378 + +0.2
4,290,379 - -0.7
4,290,379 - -0.7
4,290,494 - -0.7
4,290,880 + Xcc-8004.4481.1 0.33 -1.4
4,290,880 + Xcc-8004.4481.1 0.33 -3.0
4,290,886 + Xcc-8004.4481.1 0.33 -2.0
4,290,886 + Xcc-8004.4481.1 0.33 -1.6
4,290,886 + Xcc-8004.4481.1 0.33 -2.0
4,290,887 - Xcc-8004.4481.1 0.33 +0.3
4,290,887 - Xcc-8004.4481.1 0.33 -2.0
4,290,967 + Xcc-8004.4481.1 0.39 -0.6
4,290,968 - Xcc-8004.4481.1 0.39 -2.1
4,290,986 - Xcc-8004.4481.1 0.40 -0.8
4,290,986 - Xcc-8004.4481.1 0.40 -3.1
4,290,988 + Xcc-8004.4481.1 0.40 -1.4
4,290,989 - Xcc-8004.4481.1 0.40 -3.2
4,290,989 - Xcc-8004.4481.1 0.40 -0.8
4,291,027 + Xcc-8004.4481.1 0.43 -2.4
4,291,027 + Xcc-8004.4481.1 0.43 -1.6
4,291,166 - Xcc-8004.4481.1 0.53 -1.4
4,291,324 + Xcc-8004.4481.1 0.64 -2.1
4,291,324 + Xcc-8004.4481.1 0.64 -1.9
4,291,324 + Xcc-8004.4481.1 0.64 -3.3
4,291,496 - Xcc-8004.4481.1 0.77 -0.1
4,291,496 - Xcc-8004.4481.1 0.77 -2.0
4,291,513 + Xcc-8004.4481.1 0.78 -2.1
4,291,513 + Xcc-8004.4481.1 0.78 -1.4
4,291,687 - -1.9
4,291,687 - -1.5
4,291,687 - -1.6
4,291,690 + -1.1
4,291,690 + -1.8
4,291,690 + +0.3
4,291,690 + -1.2
4,291,690 + -2.0
4,291,690 + -1.6
4,291,691 - -3.4
4,291,691 - +0.1
4,291,691 - -2.0
4,291,691 - -0.9
4,291,691 - -0.7
4,291,771 + -0.8
4,291,771 + -0.7
4,291,789 - -0.1
4,291,806 + -0.6
4,291,807 - -0.2
4,291,810 + -0.8
4,291,810 + -0.0
4,291,810 + -0.8
4,291,810 + -0.1
4,291,810 + -0.1
4,291,811 - +1.1
4,291,811 - -1.2
4,291,811 - -1.0
4,291,811 - +0.2
4,291,818 + -0.7
4,291,818 + +0.2
4,291,842 + -2.1
4,291,843 - -0.1
4,291,843 - -0.0
4,291,843 - -0.3
4,291,843 - -0.4
4,291,947 + -2.1
4,291,948 - -1.9

Or see this region's nucleotide sequence