Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4427.1 and Xcc-8004.4428.1 overlap by 1 nucleotides Xcc-8004.4428.1 and Xcc-8004.4429.1 overlap by 4 nucleotides Xcc-8004.4429.1 and Xcc-8004.4430.1 are separated by 10 nucleotides Xcc-8004.4430.1 and Xcc-8004.4431.1 are separated by 264 nucleotides
Xcc-8004.4427.1: Xcc-8004.4427.1 - General secretion pathway protein J, at 4,236,001 to 4,236,636
Xcc-8004.4427.1
Xcc-8004.4428.1: Xcc-8004.4428.1 - General secretion pathway protein I, at 4,236,636 to 4,237,052
Xcc-8004.4428.1
Xcc-8004.4429.1: Xcc-8004.4429.1 - General secretion pathway protein H, at 4,237,049 to 4,237,558
Xcc-8004.4429.1
Xcc-8004.4430.1: Xcc-8004.4430.1 - General secretion pathway protein G, at 4,237,569 to 4,238,000
Xcc-8004.4430.1
Xcc-8004.4431.1: Xcc-8004.4431.1 - General secretion pathway protein F, at 4,238,265 to 4,239,482
Xcc-8004.4431.1
Position (kb) 4237
4238
4239 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4236.687 kb on + strand, within Xcc-8004.4428.1 at 4236.687 kb on + strand, within Xcc-8004.4428.1 at 4236.688 kb on - strand, within Xcc-8004.4428.1 at 4237.132 kb on + strand, within Xcc-8004.4429.1 at 4237.133 kb on - strand, within Xcc-8004.4429.1 at 4237.133 kb on - strand, within Xcc-8004.4429.1 at 4237.133 kb on - strand, within Xcc-8004.4429.1 at 4237.133 kb on - strand, within Xcc-8004.4429.1 at 4237.133 kb on - strand, within Xcc-8004.4429.1 at 4237.351 kb on - strand, within Xcc-8004.4429.1 at 4237.571 kb on - strand at 4237.571 kb on - strand at 4237.576 kb on + strand at 4237.577 kb on - strand at 4237.594 kb on + strand at 4237.594 kb on + strand at 4237.595 kb on - strand at 4237.669 kb on + strand, within Xcc-8004.4430.1 at 4237.784 kb on + strand, within Xcc-8004.4430.1 at 4238.231 kb on + strand at 4238.232 kb on - strand at 4238.232 kb on - strand at 4238.232 kb on - strand at 4238.290 kb on + strand at 4238.290 kb on + strand at 4238.290 kb on + strand at 4238.290 kb on + strand at 4238.290 kb on + strand at 4238.291 kb on - strand at 4238.291 kb on - strand at 4238.772 kb on + strand, within Xcc-8004.4431.1 at 4238.772 kb on + strand, within Xcc-8004.4431.1 at 4238.773 kb on - strand, within Xcc-8004.4431.1 at 4238.773 kb on - strand, within Xcc-8004.4431.1 at 4238.885 kb on - strand, within Xcc-8004.4431.1 at 4238.885 kb on - strand, within Xcc-8004.4431.1 at 4238.885 kb on - strand, within Xcc-8004.4431.1 at 4238.885 kb on - strand, within Xcc-8004.4431.1 at 4238.885 kb on - strand, within Xcc-8004.4431.1 at 4238.911 kb on + strand, within Xcc-8004.4431.1 at 4238.912 kb on - strand, within Xcc-8004.4431.1 at 4238.912 kb on - strand, within Xcc-8004.4431.1 at 4238.966 kb on - strand, within Xcc-8004.4431.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,236,687 + Xcc-8004.4428.1 0.12 +0.3 4,236,687 + Xcc-8004.4428.1 0.12 -1.2 4,236,688 - Xcc-8004.4428.1 0.12 +0.1 4,237,132 + Xcc-8004.4429.1 0.16 +0.6 4,237,133 - Xcc-8004.4429.1 0.16 -0.9 4,237,133 - Xcc-8004.4429.1 0.16 -0.2 4,237,133 - Xcc-8004.4429.1 0.16 +0.1 4,237,133 - Xcc-8004.4429.1 0.16 -0.1 4,237,133 - Xcc-8004.4429.1 0.16 -0.5 4,237,351 - Xcc-8004.4429.1 0.59 -0.8 4,237,571 - -1.2 4,237,571 - -0.3 4,237,576 + +1.0 4,237,577 - -0.2 4,237,594 + -0.9 4,237,594 + -0.4 4,237,595 - -0.4 4,237,669 + Xcc-8004.4430.1 0.23 -1.0 4,237,784 + Xcc-8004.4430.1 0.50 -1.4 4,238,231 + -0.8 4,238,232 - -1.5 4,238,232 - +1.5 4,238,232 - -0.7 4,238,290 + +1.7 4,238,290 + -0.5 4,238,290 + -2.9 4,238,290 + -0.6 4,238,290 + -0.4 4,238,291 - -1.6 4,238,291 - +0.9 4,238,772 + Xcc-8004.4431.1 0.42 -0.3 4,238,772 + Xcc-8004.4431.1 0.42 -0.5 4,238,773 - Xcc-8004.4431.1 0.42 -1.1 4,238,773 - Xcc-8004.4431.1 0.42 +0.4 4,238,885 - Xcc-8004.4431.1 0.51 +0.3 4,238,885 - Xcc-8004.4431.1 0.51 -0.9 4,238,885 - Xcc-8004.4431.1 0.51 -0.0 4,238,885 - Xcc-8004.4431.1 0.51 +0.6 4,238,885 - Xcc-8004.4431.1 0.51 +0.5 4,238,911 + Xcc-8004.4431.1 0.53 -0.3 4,238,912 - Xcc-8004.4431.1 0.53 -0.4 4,238,912 - Xcc-8004.4431.1 0.53 -0.0 4,238,966 - Xcc-8004.4431.1 0.58 -0.6
Or see this region's nucleotide sequence