Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4373.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
4,182,764	+				-0.1
4,182,764	+				-1.3
4,182,764	+				+0.8
4,182,764	+				+1.4
4,182,764	+				-1.6
4,182,764	+				-1.0
4,182,764	+				+0.6
4,182,764	+				-1.4
4,182,764	+				-1.1
4,182,764	+				+0.3
4,182,764	+				+0.9
4,182,764	+				+0.1
4,182,765	-				-1.2
4,182,765	-				+1.3
4,182,765	-				-1.8
4,182,765	-				-0.5
4,182,765	-				+0.7
4,182,765	-				-0.4
4,182,765	-				-0.7
4,182,765	-				+0.7
4,182,765	-				-1.2
4,182,765	-				-0.6
4,182,766	+				-0.5
4,182,766	+				-0.3
4,182,774	+				+0.6
4,182,774	+				-0.5
4,182,775	-				-0.9
4,183,091	+		Xcc-8004.4371.1	0.41	-0.9
4,183,091	+		Xcc-8004.4371.1	0.41	+1.0
4,183,091	+		Xcc-8004.4371.1	0.41	-0.5
4,183,092	-		Xcc-8004.4371.1	0.41	-0.9
4,183,092	-		Xcc-8004.4371.1	0.41	-2.0
4,183,092	-		Xcc-8004.4371.1	0.41	+0.7
4,183,092	-		Xcc-8004.4371.1	0.41	+0.2
4,183,452	+		Xcc-8004.4371.1	0.85	+0.4
4,183,602	-				+0.7
4,184,277	-		Xcc-8004.4373.1	0.36	-1.4
4,184,393	+		Xcc-8004.4373.1	0.42	-1.7
4,184,487	-		Xcc-8004.4373.1	0.48	+0.0
4,184,489	+		Xcc-8004.4373.1	0.48	-1.1
4,184,489	+		Xcc-8004.4373.1	0.48	+0.9
4,184,490	-		Xcc-8004.4373.1	0.48	+0.5
4,184,565	-		Xcc-8004.4373.1	0.52	+0.9
4,184,594	+		Xcc-8004.4373.1	0.54	+2.2
4,184,762	+		Xcc-8004.4373.1	0.64	-0.7
4,184,763	-		Xcc-8004.4373.1	0.64	+1.5
4,184,933	+		Xcc-8004.4373.1	0.74	-1.6
4,185,102	-		Xcc-8004.4373.1	0.83	-2.4
4,185,240	-				-0.9
4,185,493	-		Xcc-8004.4374.1	0.27	-1.7
4,185,608	+		Xcc-8004.4374.1	0.58	+0.6
4,185,626	-		Xcc-8004.4374.1	0.63	+0.9
4,186,046	+		Xcc-8004.4375.1	0.50	-0.3
4,186,047	-		Xcc-8004.4375.1	0.50	-0.3
4,186,047	-		Xcc-8004.4375.1	0.50	+0.0
4,186,200	+		Xcc-8004.4375.1	0.78	-1.2
4,186,201	-		Xcc-8004.4375.1	0.78	-0.5