Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4322.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
4,142,746	-				-0.7
4,142,746	-				+0.7
4,142,840	+				-0.3
4,143,012	+		Xcc-8004.4321.1	0.25	-0.8
4,143,012	+		Xcc-8004.4321.1	0.25	-0.0
4,143,013	-		Xcc-8004.4321.1	0.25	+0.3
4,143,081	+		Xcc-8004.4321.1	0.36	+0.9
4,143,081	+		Xcc-8004.4321.1	0.36	+0.4
4,143,099	+		Xcc-8004.4321.1	0.39	-0.9
4,143,099	+		Xcc-8004.4321.1	0.39	-0.4
4,143,099	+		Xcc-8004.4321.1	0.39	-1.8
4,143,100	-		Xcc-8004.4321.1	0.39	+1.5
4,143,100	-		Xcc-8004.4321.1	0.39	-2.0
4,143,100	-		Xcc-8004.4321.1	0.39	-0.6
4,143,100	-		Xcc-8004.4321.1	0.39	-1.1
4,143,100	-		Xcc-8004.4321.1	0.39	-0.2
4,143,104	-		Xcc-8004.4321.1	0.40	-0.8
4,143,149	+		Xcc-8004.4321.1	0.47	-0.1
4,143,150	-		Xcc-8004.4321.1	0.47	+0.3
4,143,401	-		Xcc-8004.4321.1	0.88	-1.0
4,143,450	-				-1.9
4,143,529	+				+0.7
4,143,529	+				+0.7
4,143,529	+				-0.9
4,143,529	+				-0.9
4,143,529	+				-0.6
4,143,529	+				-0.7
4,143,529	+				+0.2
4,143,530	-				-0.1
4,143,530	-				+1.1
4,143,530	-				+0.1
4,143,543	-				-0.5
4,143,543	-				+1.2
4,143,543	-				-2.4
4,143,642	+				+0.2
4,143,643	-				+1.5
4,143,643	-				-0.6
4,143,643	-				+0.4
4,143,643	-				+0.9
4,143,643	-				-0.6
4,143,645	+				-0.3
4,143,645	+				+0.9
4,143,723	+		Xcc-8004.4322.1	0.22	-1.4
4,143,772	-		Xcc-8004.4322.1	0.31	-0.8
4,144,311	+				-0.1
4,144,311	+				-1.0
4,144,311	+				+1.0
4,144,325	+				+0.3
4,144,325	+				+1.7
4,144,333	+		Xcc-8004.4323.1	0.11	+1.1
4,144,333	+		Xcc-8004.4323.1	0.11	-0.0
4,144,334	-		Xcc-8004.4323.1	0.11	+0.2
4,144,407	-		Xcc-8004.4323.1	0.25	+0.6
4,144,627	+		Xcc-8004.4323.1	0.66	-1.2
4,144,628	-		Xcc-8004.4323.1	0.66	-0.4
4,144,631	+		Xcc-8004.4323.1	0.66	-0.2
4,144,974	+		Xcc-8004.4325.1	0.13	-1.2
4,144,974	+		Xcc-8004.4325.1	0.13	+0.5
4,145,123	+		Xcc-8004.4325.1	0.24	+0.4