Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4315.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4314.1 and Xcc-8004.4315.1 are separated by 277 nucleotidesXcc-8004.4315.1 and Xcc-8004.4317.1 are separated by 216 nucleotides Xcc-8004.4314.1: Xcc-8004.4314.1 - Phosphoenolpyruvate carboxylase (EC 4.1.1.31), at 4,134,636 to 4,137,350 Xcc-8004.4314.1 Xcc-8004.4315.1: Xcc-8004.4315.1 - Dipeptidyl aminopeptidases/acylaminoacyl-peptidases, at 4,137,628 to 4,140,135 Xcc-8004.4315.1 Xcc-8004.4317.1: Xcc-8004.4317.1 - Adenosylhomocysteinase (EC 3.3.1.1), at 4,140,352 to 4,141,845 Xcc-8004.4317.1 Position (kb) 4137 4138 4139 4140 4141Strain fitness (log2 ratio) -2 -1 0 1 2at 4136.650 kb on + strand, within Xcc-8004.4314.1at 4136.650 kb on + strand, within Xcc-8004.4314.1at 4136.650 kb on + strand, within Xcc-8004.4314.1at 4136.650 kb on + strand, within Xcc-8004.4314.1at 4136.650 kb on + strand, within Xcc-8004.4314.1at 4136.651 kb on - strand, within Xcc-8004.4314.1at 4136.651 kb on - strand, within Xcc-8004.4314.1at 4136.651 kb on - strand, within Xcc-8004.4314.1at 4136.651 kb on - strand, within Xcc-8004.4314.1at 4136.689 kb on + strand, within Xcc-8004.4314.1at 4136.689 kb on + strand, within Xcc-8004.4314.1at 4136.690 kb on - strand, within Xcc-8004.4314.1at 4136.690 kb on - strand, within Xcc-8004.4314.1at 4136.690 kb on - strand, within Xcc-8004.4314.1at 4137.037 kb on + strand, within Xcc-8004.4314.1at 4137.094 kb on + strandat 4137.094 kb on + strandat 4137.094 kb on + strandat 4137.094 kb on + strandat 4137.095 kb on - strandat 4137.095 kb on - strandat 4137.098 kb on + strandat 4137.098 kb on + strandat 4137.406 kb on + strandat 4137.478 kb on - strandat 4137.540 kb on + strandat 4137.541 kb on - strandat 4137.732 kb on - strandat 4137.887 kb on + strand, within Xcc-8004.4315.1at 4137.887 kb on + strand, within Xcc-8004.4315.1at 4137.888 kb on - strand, within Xcc-8004.4315.1at 4137.888 kb on - strand, within Xcc-8004.4315.1at 4137.888 kb on - strand, within Xcc-8004.4315.1at 4137.911 kb on + strand, within Xcc-8004.4315.1at 4137.932 kb on + strand, within Xcc-8004.4315.1at 4137.932 kb on + strand, within Xcc-8004.4315.1at 4137.981 kb on - strand, within Xcc-8004.4315.1at 4138.056 kb on - strand, within Xcc-8004.4315.1at 4138.127 kb on + strand, within Xcc-8004.4315.1at 4138.154 kb on + strand, within Xcc-8004.4315.1at 4138.155 kb on - strand, within Xcc-8004.4315.1at 4138.220 kb on + strand, within Xcc-8004.4315.1at 4138.254 kb on - strand, within Xcc-8004.4315.1at 4138.254 kb on - strand, within Xcc-8004.4315.1at 4138.274 kb on + strand, within Xcc-8004.4315.1at 4138.274 kb on + strand, within Xcc-8004.4315.1at 4138.373 kb on + strand, within Xcc-8004.4315.1at 4138.427 kb on + strand, within Xcc-8004.4315.1at 4138.529 kb on + strand, within Xcc-8004.4315.1at 4138.529 kb on + strand, within Xcc-8004.4315.1at 4138.529 kb on + strand, within Xcc-8004.4315.1at 4138.529 kb on + strand, within Xcc-8004.4315.1at 4138.530 kb on - strand, within Xcc-8004.4315.1at 4138.530 kb on - strand, within Xcc-8004.4315.1at 4138.532 kb on + strand, within Xcc-8004.4315.1at 4138.532 kb on + strand, within Xcc-8004.4315.1at 4138.532 kb on + strand, within Xcc-8004.4315.1at 4138.532 kb on + strand, within Xcc-8004.4315.1at 4138.533 kb on - strand, within Xcc-8004.4315.1at 4138.533 kb on - strand, within Xcc-8004.4315.1at 4138.533 kb on - strand, within Xcc-8004.4315.1at 4138.613 kb on + strand, within Xcc-8004.4315.1at 4138.613 kb on + strand, within Xcc-8004.4315.1at 4138.613 kb on + strand, within Xcc-8004.4315.1at 4138.614 kb on - strand, within Xcc-8004.4315.1at 4138.614 kb on - strand, within Xcc-8004.4315.1at 4138.614 kb on - strand, within Xcc-8004.4315.1at 4138.805 kb on + strand, within Xcc-8004.4315.1at 4138.805 kb on + strand, within Xcc-8004.4315.1at 4138.806 kb on - strand, within Xcc-8004.4315.1at 4138.806 kb on - strand, within Xcc-8004.4315.1at 4139.249 kb on + strand, within Xcc-8004.4315.1at 4139.249 kb on + strand, within Xcc-8004.4315.1at 4139.250 kb on - strand, within Xcc-8004.4315.1at 4139.285 kb on + strand, within Xcc-8004.4315.1at 4139.286 kb on - strand, within Xcc-8004.4315.1at 4139.286 kb on - strand, within Xcc-8004.4315.1at 4139.318 kb on + strand, within Xcc-8004.4315.1at 4139.318 kb on + strand, within Xcc-8004.4315.1at 4139.318 kb on + strand, within Xcc-8004.4315.1at 4139.318 kb on + strand, within Xcc-8004.4315.1at 4139.319 kb on - strand, within Xcc-8004.4315.1at 4139.319 kb on - strand, within Xcc-8004.4315.1at 4139.319 kb on - strand, within Xcc-8004.4315.1at 4139.387 kb on + strand, within Xcc-8004.4315.1at 4139.387 kb on + strand, within Xcc-8004.4315.1at 4139.387 kb on + strand, within Xcc-8004.4315.1at 4139.387 kb on + strand, within Xcc-8004.4315.1at 4139.387 kb on + strand, within Xcc-8004.4315.1at 4139.387 kb on + strand, within Xcc-8004.4315.1at 4139.387 kb on + strand, within Xcc-8004.4315.1at 4139.387 kb on + strand, within Xcc-8004.4315.1at 4139.387 kb on + strand, within Xcc-8004.4315.1at 4139.388 kb on - strand, within Xcc-8004.4315.1at 4139.388 kb on - strand, within Xcc-8004.4315.1at 4139.388 kb on - strand, within Xcc-8004.4315.1at 4139.390 kb on + strand, within Xcc-8004.4315.1at 4139.391 kb on - strand, within Xcc-8004.4315.1at 4139.391 kb on - strand, within Xcc-8004.4315.1at 4139.562 kb on + strand, within Xcc-8004.4315.1at 4139.598 kb on + strand, within Xcc-8004.4315.1at 4139.598 kb on + strand, within Xcc-8004.4315.1at 4139.599 kb on - strand, within Xcc-8004.4315.1at 4139.599 kb on - strand, within Xcc-8004.4315.1at 4140.009 kb on - strandat 4140.169 kb on + strandat 4140.169 kb on + strandat 4140.169 kb on + strandat 4140.169 kb on + strandat 4140.170 kb on - strandat 4140.247 kb on - strandat 4140.248 kb on + strandat 4140.248 kb on + strandat 4140.248 kb on + strandat 4140.248 kb on + strandat 4140.248 kb on + strandat 4140.249 kb on - strandat 4140.389 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,136,650 + Xcc-8004.4314.1 0.74 -1.0
4,136,650 + Xcc-8004.4314.1 0.74 -0.1
4,136,650 + Xcc-8004.4314.1 0.74 +0.6
4,136,650 + Xcc-8004.4314.1 0.74 -1.2
4,136,650 + Xcc-8004.4314.1 0.74 +0.9
4,136,651 - Xcc-8004.4314.1 0.74 -0.4
4,136,651 - Xcc-8004.4314.1 0.74 +0.0
4,136,651 - Xcc-8004.4314.1 0.74 -0.9
4,136,651 - Xcc-8004.4314.1 0.74 -0.7
4,136,689 + Xcc-8004.4314.1 0.76 +0.0
4,136,689 + Xcc-8004.4314.1 0.76 -0.3
4,136,690 - Xcc-8004.4314.1 0.76 -0.4
4,136,690 - Xcc-8004.4314.1 0.76 +0.1
4,136,690 - Xcc-8004.4314.1 0.76 -0.6
4,137,037 + Xcc-8004.4314.1 0.88 -0.6
4,137,094 + -0.8
4,137,094 + +1.3
4,137,094 + -1.4
4,137,094 + -0.7
4,137,095 - +0.2
4,137,095 - -0.7
4,137,098 + -0.6
4,137,098 + -0.1
4,137,406 + -0.8
4,137,478 - +0.6
4,137,540 + -1.3
4,137,541 - +0.8
4,137,732 - +0.4
4,137,887 + Xcc-8004.4315.1 0.10 -1.5
4,137,887 + Xcc-8004.4315.1 0.10 +0.0
4,137,888 - Xcc-8004.4315.1 0.10 -1.1
4,137,888 - Xcc-8004.4315.1 0.10 -0.8
4,137,888 - Xcc-8004.4315.1 0.10 +1.4
4,137,911 + Xcc-8004.4315.1 0.11 -0.7
4,137,932 + Xcc-8004.4315.1 0.12 +0.9
4,137,932 + Xcc-8004.4315.1 0.12 -0.0
4,137,981 - Xcc-8004.4315.1 0.14 -1.5
4,138,056 - Xcc-8004.4315.1 0.17 -0.1
4,138,127 + Xcc-8004.4315.1 0.20 +0.2
4,138,154 + Xcc-8004.4315.1 0.21 -0.7
4,138,155 - Xcc-8004.4315.1 0.21 +0.0
4,138,220 + Xcc-8004.4315.1 0.24 -0.8
4,138,254 - Xcc-8004.4315.1 0.25 -0.9
4,138,254 - Xcc-8004.4315.1 0.25 +0.1
4,138,274 + Xcc-8004.4315.1 0.26 -0.5
4,138,274 + Xcc-8004.4315.1 0.26 -1.1
4,138,373 + Xcc-8004.4315.1 0.30 -0.2
4,138,427 + Xcc-8004.4315.1 0.32 +0.3
4,138,529 + Xcc-8004.4315.1 0.36 -0.1
4,138,529 + Xcc-8004.4315.1 0.36 +0.4
4,138,529 + Xcc-8004.4315.1 0.36 +1.0
4,138,529 + Xcc-8004.4315.1 0.36 -0.2
4,138,530 - Xcc-8004.4315.1 0.36 -0.0
4,138,530 - Xcc-8004.4315.1 0.36 +0.6
4,138,532 + Xcc-8004.4315.1 0.36 -0.7
4,138,532 + Xcc-8004.4315.1 0.36 -1.4
4,138,532 + Xcc-8004.4315.1 0.36 -0.2
4,138,532 + Xcc-8004.4315.1 0.36 +1.0
4,138,533 - Xcc-8004.4315.1 0.36 -0.9
4,138,533 - Xcc-8004.4315.1 0.36 -0.3
4,138,533 - Xcc-8004.4315.1 0.36 +1.0
4,138,613 + Xcc-8004.4315.1 0.39 -0.6
4,138,613 + Xcc-8004.4315.1 0.39 +0.4
4,138,613 + Xcc-8004.4315.1 0.39 -0.6
4,138,614 - Xcc-8004.4315.1 0.39 +0.5
4,138,614 - Xcc-8004.4315.1 0.39 +0.4
4,138,614 - Xcc-8004.4315.1 0.39 -1.9
4,138,805 + Xcc-8004.4315.1 0.47 +1.0
4,138,805 + Xcc-8004.4315.1 0.47 -1.0
4,138,806 - Xcc-8004.4315.1 0.47 -1.3
4,138,806 - Xcc-8004.4315.1 0.47 +0.4
4,139,249 + Xcc-8004.4315.1 0.65 +0.3
4,139,249 + Xcc-8004.4315.1 0.65 +0.6
4,139,250 - Xcc-8004.4315.1 0.65 +0.4
4,139,285 + Xcc-8004.4315.1 0.66 -1.5
4,139,286 - Xcc-8004.4315.1 0.66 -0.9
4,139,286 - Xcc-8004.4315.1 0.66 -0.6
4,139,318 + Xcc-8004.4315.1 0.67 -0.7
4,139,318 + Xcc-8004.4315.1 0.67 +0.1
4,139,318 + Xcc-8004.4315.1 0.67 -0.4
4,139,318 + Xcc-8004.4315.1 0.67 -0.3
4,139,319 - Xcc-8004.4315.1 0.67 -0.0
4,139,319 - Xcc-8004.4315.1 0.67 +0.6
4,139,319 - Xcc-8004.4315.1 0.67 -0.0
4,139,387 + Xcc-8004.4315.1 0.70 -0.9
4,139,387 + Xcc-8004.4315.1 0.70 +0.9
4,139,387 + Xcc-8004.4315.1 0.70 -0.8
4,139,387 + Xcc-8004.4315.1 0.70 -0.0
4,139,387 + Xcc-8004.4315.1 0.70 -0.4
4,139,387 + Xcc-8004.4315.1 0.70 -1.8
4,139,387 + Xcc-8004.4315.1 0.70 -0.7
4,139,387 + Xcc-8004.4315.1 0.70 -0.5
4,139,387 + Xcc-8004.4315.1 0.70 +0.8
4,139,388 - Xcc-8004.4315.1 0.70 +0.3
4,139,388 - Xcc-8004.4315.1 0.70 +1.6
4,139,388 - Xcc-8004.4315.1 0.70 -1.0
4,139,390 + Xcc-8004.4315.1 0.70 -1.2
4,139,391 - Xcc-8004.4315.1 0.70 -0.4
4,139,391 - Xcc-8004.4315.1 0.70 +0.5
4,139,562 + Xcc-8004.4315.1 0.77 +0.5
4,139,598 + Xcc-8004.4315.1 0.79 -0.4
4,139,598 + Xcc-8004.4315.1 0.79 -1.3
4,139,599 - Xcc-8004.4315.1 0.79 -0.5
4,139,599 - Xcc-8004.4315.1 0.79 -0.4
4,140,009 - -0.8
4,140,169 + +1.5
4,140,169 + +0.2
4,140,169 + -0.8
4,140,169 + -1.2
4,140,170 - -0.2
4,140,247 - +1.5
4,140,248 + -0.5
4,140,248 + -0.1
4,140,248 + -1.0
4,140,248 + -0.4
4,140,248 + -0.5
4,140,249 - +2.0
4,140,389 + +1.0

Or see this region's nucleotide sequence