Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4286.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4285.1 and Xcc-8004.4286.1 are separated by 141 nucleotidesXcc-8004.4286.1 and Xcc-8004.4287.1 are separated by 99 nucleotidesXcc-8004.4287.1 and Xcc-8004.4288.1 overlap by 149 nucleotides Xcc-8004.4285.1: Xcc-8004.4285.1 - two-component system sensor protein, at 4,099,702 to 4,100,973 Xcc-8004.4285.1 Xcc-8004.4286.1: Xcc-8004.4286.1 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 4,101,115 to 4,101,828 Xcc-8004.4286.1 Xcc-8004.4287.1: Xcc-8004.4287.1 - Arylesterase precursor (EC 3.1.1.2), at 4,101,928 to 4,102,581 Xcc-8004.4287.1 Xcc-8004.4288.1: Xcc-8004.4288.1 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 4,102,433 to 4,103,308 Xcc-8004.4288.1 Position (kb) 4101 4102Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4100.221 kb on - strand, within Xcc-8004.4285.1at 4100.221 kb on - strand, within Xcc-8004.4285.1at 4100.221 kb on - strand, within Xcc-8004.4285.1at 4100.526 kb on - strand, within Xcc-8004.4285.1at 4100.526 kb on - strand, within Xcc-8004.4285.1at 4100.526 kb on - strand, within Xcc-8004.4285.1at 4100.526 kb on - strand, within Xcc-8004.4285.1at 4100.546 kb on + strand, within Xcc-8004.4285.1at 4100.546 kb on + strand, within Xcc-8004.4285.1at 4100.546 kb on + strand, within Xcc-8004.4285.1at 4100.546 kb on + strand, within Xcc-8004.4285.1at 4100.547 kb on - strand, within Xcc-8004.4285.1at 4100.547 kb on - strand, within Xcc-8004.4285.1at 4100.547 kb on - strand, within Xcc-8004.4285.1at 4100.547 kb on - strand, within Xcc-8004.4285.1at 4100.547 kb on - strand, within Xcc-8004.4285.1at 4100.547 kb on - strand, within Xcc-8004.4285.1at 4100.547 kb on - strand, within Xcc-8004.4285.1at 4100.630 kb on + strand, within Xcc-8004.4285.1at 4100.630 kb on + strand, within Xcc-8004.4285.1at 4100.630 kb on + strand, within Xcc-8004.4285.1at 4100.630 kb on + strand, within Xcc-8004.4285.1at 4100.631 kb on - strand, within Xcc-8004.4285.1at 4100.631 kb on - strand, within Xcc-8004.4285.1at 4100.660 kb on + strand, within Xcc-8004.4285.1at 4100.660 kb on + strand, within Xcc-8004.4285.1at 4100.660 kb on + strand, within Xcc-8004.4285.1at 4100.661 kb on - strand, within Xcc-8004.4285.1at 4100.759 kb on + strand, within Xcc-8004.4285.1at 4100.778 kb on + strand, within Xcc-8004.4285.1at 4100.778 kb on + strand, within Xcc-8004.4285.1at 4100.778 kb on + strand, within Xcc-8004.4285.1at 4100.810 kb on + strand, within Xcc-8004.4285.1at 4100.810 kb on + strand, within Xcc-8004.4285.1at 4100.811 kb on - strand, within Xcc-8004.4285.1at 4100.811 kb on - strand, within Xcc-8004.4285.1at 4100.811 kb on - strand, within Xcc-8004.4285.1at 4100.850 kb on + strandat 4100.864 kb on + strandat 4100.864 kb on + strandat 4100.865 kb on - strandat 4100.865 kb on - strandat 4100.865 kb on - strandat 4100.888 kb on + strandat 4101.000 kb on + strandat 4101.001 kb on - strandat 4101.001 kb on - strandat 4101.001 kb on - strandat 4101.002 kb on + strandat 4101.002 kb on + strandat 4101.002 kb on + strandat 4101.003 kb on - strandat 4101.003 kb on - strandat 4101.218 kb on + strand, within Xcc-8004.4286.1at 4101.218 kb on + strand, within Xcc-8004.4286.1at 4101.218 kb on + strand, within Xcc-8004.4286.1at 4101.218 kb on + strand, within Xcc-8004.4286.1at 4101.218 kb on + strand, within Xcc-8004.4286.1at 4101.218 kb on + strand, within Xcc-8004.4286.1at 4101.218 kb on + strand, within Xcc-8004.4286.1at 4101.219 kb on - strand, within Xcc-8004.4286.1at 4101.219 kb on - strand, within Xcc-8004.4286.1at 4101.219 kb on - strand, within Xcc-8004.4286.1at 4101.509 kb on + strand, within Xcc-8004.4286.1at 4101.510 kb on - strand, within Xcc-8004.4286.1at 4101.510 kb on - strand, within Xcc-8004.4286.1at 4101.510 kb on - strand, within Xcc-8004.4286.1at 4101.510 kb on - strand, within Xcc-8004.4286.1at 4101.510 kb on - strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.671 kb on + strand, within Xcc-8004.4286.1at 4101.672 kb on - strand, within Xcc-8004.4286.1at 4101.672 kb on - strand, within Xcc-8004.4286.1at 4101.672 kb on - strand, within Xcc-8004.4286.1at 4101.672 kb on - strand, within Xcc-8004.4286.1at 4101.672 kb on - strand, within Xcc-8004.4286.1at 4101.719 kb on + strand, within Xcc-8004.4286.1at 4101.719 kb on + strand, within Xcc-8004.4286.1at 4101.720 kb on - strand, within Xcc-8004.4286.1at 4101.720 kb on - strand, within Xcc-8004.4286.1at 4101.720 kb on - strand, within Xcc-8004.4286.1at 4101.720 kb on - strand, within Xcc-8004.4286.1at 4101.771 kb on + strandat 4101.772 kb on - strandat 4102.076 kb on + strand, within Xcc-8004.4287.1at 4102.076 kb on + strand, within Xcc-8004.4287.1at 4102.077 kb on - strand, within Xcc-8004.4287.1at 4102.077 kb on - strand, within Xcc-8004.4287.1at 4102.097 kb on + strand, within Xcc-8004.4287.1at 4102.097 kb on + strand, within Xcc-8004.4287.1at 4102.097 kb on + strand, within Xcc-8004.4287.1at 4102.097 kb on + strand, within Xcc-8004.4287.1at 4102.097 kb on + strand, within Xcc-8004.4287.1at 4102.097 kb on + strand, within Xcc-8004.4287.1at 4102.097 kb on + strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.098 kb on - strand, within Xcc-8004.4287.1at 4102.133 kb on + strand, within Xcc-8004.4287.1at 4102.133 kb on + strand, within Xcc-8004.4287.1at 4102.133 kb on + strand, within Xcc-8004.4287.1at 4102.133 kb on + strand, within Xcc-8004.4287.1at 4102.134 kb on - strand, within Xcc-8004.4287.1at 4102.134 kb on - strand, within Xcc-8004.4287.1at 4102.134 kb on - strand, within Xcc-8004.4287.1at 4102.134 kb on - strand, within Xcc-8004.4287.1at 4102.134 kb on - strand, within Xcc-8004.4287.1at 4102.134 kb on - strand, within Xcc-8004.4287.1at 4102.559 kb on + strandat 4102.560 kb on - strandat 4102.729 kb on + strand, within Xcc-8004.4288.1at 4102.729 kb on + strand, within Xcc-8004.4288.1at 4102.729 kb on + strand, within Xcc-8004.4288.1at 4102.729 kb on + strand, within Xcc-8004.4288.1at 4102.730 kb on - strand, within Xcc-8004.4288.1at 4102.730 kb on - strand, within Xcc-8004.4288.1at 4102.730 kb on - strand, within Xcc-8004.4288.1at 4102.730 kb on - strand, within Xcc-8004.4288.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,100,221 - Xcc-8004.4285.1 0.41 +0.7
4,100,221 - Xcc-8004.4285.1 0.41 -1.8
4,100,221 - Xcc-8004.4285.1 0.41 +1.2
4,100,526 - Xcc-8004.4285.1 0.65 +0.8
4,100,526 - Xcc-8004.4285.1 0.65 +0.5
4,100,526 - Xcc-8004.4285.1 0.65 -0.4
4,100,526 - Xcc-8004.4285.1 0.65 -0.1
4,100,546 + Xcc-8004.4285.1 0.66 +0.1
4,100,546 + Xcc-8004.4285.1 0.66 +1.3
4,100,546 + Xcc-8004.4285.1 0.66 -0.1
4,100,546 + Xcc-8004.4285.1 0.66 -1.4
4,100,547 - Xcc-8004.4285.1 0.66 -1.6
4,100,547 - Xcc-8004.4285.1 0.66 +0.2
4,100,547 - Xcc-8004.4285.1 0.66 +0.2
4,100,547 - Xcc-8004.4285.1 0.66 +0.3
4,100,547 - Xcc-8004.4285.1 0.66 +1.1
4,100,547 - Xcc-8004.4285.1 0.66 +0.7
4,100,547 - Xcc-8004.4285.1 0.66 -0.5
4,100,630 + Xcc-8004.4285.1 0.73 -0.6
4,100,630 + Xcc-8004.4285.1 0.73 +0.5
4,100,630 + Xcc-8004.4285.1 0.73 -1.2
4,100,630 + Xcc-8004.4285.1 0.73 +0.1
4,100,631 - Xcc-8004.4285.1 0.73 +0.2
4,100,631 - Xcc-8004.4285.1 0.73 +0.3
4,100,660 + Xcc-8004.4285.1 0.75 -0.5
4,100,660 + Xcc-8004.4285.1 0.75 -0.8
4,100,660 + Xcc-8004.4285.1 0.75 +0.9
4,100,661 - Xcc-8004.4285.1 0.75 -0.1
4,100,759 + Xcc-8004.4285.1 0.83 -1.9
4,100,778 + Xcc-8004.4285.1 0.85 -0.1
4,100,778 + Xcc-8004.4285.1 0.85 +2.5
4,100,778 + Xcc-8004.4285.1 0.85 -0.4
4,100,810 + Xcc-8004.4285.1 0.87 +0.1
4,100,810 + Xcc-8004.4285.1 0.87 +0.1
4,100,811 - Xcc-8004.4285.1 0.87 +1.4
4,100,811 - Xcc-8004.4285.1 0.87 +1.3
4,100,811 - Xcc-8004.4285.1 0.87 -0.8
4,100,850 + +0.3
4,100,864 + +0.0
4,100,864 + +1.0
4,100,865 - -1.0
4,100,865 - -1.6
4,100,865 - -0.5
4,100,888 + -0.1
4,101,000 + +0.5
4,101,001 - +0.9
4,101,001 - +0.5
4,101,001 - -0.3
4,101,002 + +0.9
4,101,002 + +0.8
4,101,002 + +0.4
4,101,003 - -1.9
4,101,003 - -2.0
4,101,218 + Xcc-8004.4286.1 0.14 -1.0
4,101,218 + Xcc-8004.4286.1 0.14 -1.5
4,101,218 + Xcc-8004.4286.1 0.14 -0.7
4,101,218 + Xcc-8004.4286.1 0.14 +0.9
4,101,218 + Xcc-8004.4286.1 0.14 -0.0
4,101,218 + Xcc-8004.4286.1 0.14 +1.0
4,101,218 + Xcc-8004.4286.1 0.14 -1.1
4,101,219 - Xcc-8004.4286.1 0.15 +1.5
4,101,219 - Xcc-8004.4286.1 0.15 -0.5
4,101,219 - Xcc-8004.4286.1 0.15 -0.9
4,101,509 + Xcc-8004.4286.1 0.55 -0.3
4,101,510 - Xcc-8004.4286.1 0.55 +0.9
4,101,510 - Xcc-8004.4286.1 0.55 -0.1
4,101,510 - Xcc-8004.4286.1 0.55 -1.0
4,101,510 - Xcc-8004.4286.1 0.55 -1.9
4,101,510 - Xcc-8004.4286.1 0.55 -1.7
4,101,671 + Xcc-8004.4286.1 0.78 -2.1
4,101,671 + Xcc-8004.4286.1 0.78 -0.6
4,101,671 + Xcc-8004.4286.1 0.78 -0.3
4,101,671 + Xcc-8004.4286.1 0.78 -2.5
4,101,671 + Xcc-8004.4286.1 0.78 +0.2
4,101,671 + Xcc-8004.4286.1 0.78 -2.4
4,101,671 + Xcc-8004.4286.1 0.78 -0.6
4,101,671 + Xcc-8004.4286.1 0.78 -1.0
4,101,671 + Xcc-8004.4286.1 0.78 +2.5
4,101,671 + Xcc-8004.4286.1 0.78 -1.3
4,101,671 + Xcc-8004.4286.1 0.78 -1.3
4,101,671 + Xcc-8004.4286.1 0.78 -0.5
4,101,672 - Xcc-8004.4286.1 0.78 -0.5
4,101,672 - Xcc-8004.4286.1 0.78 -1.3
4,101,672 - Xcc-8004.4286.1 0.78 +0.7
4,101,672 - Xcc-8004.4286.1 0.78 -1.0
4,101,672 - Xcc-8004.4286.1 0.78 -0.8
4,101,719 + Xcc-8004.4286.1 0.85 -0.1
4,101,719 + Xcc-8004.4286.1 0.85 -1.1
4,101,720 - Xcc-8004.4286.1 0.85 -1.2
4,101,720 - Xcc-8004.4286.1 0.85 -3.0
4,101,720 - Xcc-8004.4286.1 0.85 +0.9
4,101,720 - Xcc-8004.4286.1 0.85 +0.2
4,101,771 + -0.7
4,101,772 - -1.4
4,102,076 + Xcc-8004.4287.1 0.23 -1.1
4,102,076 + Xcc-8004.4287.1 0.23 -0.8
4,102,077 - Xcc-8004.4287.1 0.23 +0.1
4,102,077 - Xcc-8004.4287.1 0.23 +0.9
4,102,097 + Xcc-8004.4287.1 0.26 +1.2
4,102,097 + Xcc-8004.4287.1 0.26 -1.5
4,102,097 + Xcc-8004.4287.1 0.26 -0.1
4,102,097 + Xcc-8004.4287.1 0.26 -2.4
4,102,097 + Xcc-8004.4287.1 0.26 -0.5
4,102,097 + Xcc-8004.4287.1 0.26 +1.2
4,102,097 + Xcc-8004.4287.1 0.26 +4.1
4,102,098 - Xcc-8004.4287.1 0.26 +1.3
4,102,098 - Xcc-8004.4287.1 0.26 -0.5
4,102,098 - Xcc-8004.4287.1 0.26 -1.0
4,102,098 - Xcc-8004.4287.1 0.26 +0.5
4,102,098 - Xcc-8004.4287.1 0.26 -0.3
4,102,098 - Xcc-8004.4287.1 0.26 +0.6
4,102,098 - Xcc-8004.4287.1 0.26 -2.6
4,102,098 - Xcc-8004.4287.1 0.26 +0.7
4,102,098 - Xcc-8004.4287.1 0.26 -0.5
4,102,098 - Xcc-8004.4287.1 0.26 -0.1
4,102,133 + Xcc-8004.4287.1 0.31 -1.3
4,102,133 + Xcc-8004.4287.1 0.31 +0.6
4,102,133 + Xcc-8004.4287.1 0.31 -1.1
4,102,133 + Xcc-8004.4287.1 0.31 -0.1
4,102,134 - Xcc-8004.4287.1 0.31 -0.2
4,102,134 - Xcc-8004.4287.1 0.31 +1.0
4,102,134 - Xcc-8004.4287.1 0.31 +0.1
4,102,134 - Xcc-8004.4287.1 0.31 +0.7
4,102,134 - Xcc-8004.4287.1 0.31 +0.8
4,102,134 - Xcc-8004.4287.1 0.31 -1.6
4,102,559 + -1.0
4,102,560 - +0.0
4,102,729 + Xcc-8004.4288.1 0.34 +0.6
4,102,729 + Xcc-8004.4288.1 0.34 -0.7
4,102,729 + Xcc-8004.4288.1 0.34 -0.5
4,102,729 + Xcc-8004.4288.1 0.34 -0.7
4,102,730 - Xcc-8004.4288.1 0.34 +0.4
4,102,730 - Xcc-8004.4288.1 0.34 +0.7
4,102,730 - Xcc-8004.4288.1 0.34 +0.3
4,102,730 - Xcc-8004.4288.1 0.34 -0.6

Or see this region's nucleotide sequence