Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4283.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
4,097,124	+		Xcc-8004.4281.1	0.45	+0.8
4,097,175	+		Xcc-8004.4281.1	0.59	+0.2
4,097,175	+		Xcc-8004.4281.1	0.59	-0.5
4,097,293	+				-0.5
4,097,293	+				+1.8
4,097,293	+				+1.1
4,097,294	-				+0.6
4,097,294	-				-0.3
4,097,294	-				+0.3
4,097,294	-				-0.3
4,097,294	-				-0.2
4,097,294	-				+1.0
4,097,294	-				+0.8
4,097,294	-				+0.4
4,097,320	+				-0.3
4,097,321	-				-0.8
4,097,321	-				-0.4
4,097,476	+		Xcc-8004.4282.1	0.20	+0.1
4,097,476	+		Xcc-8004.4282.1	0.20	+3.2
4,097,476	+		Xcc-8004.4282.1	0.20	-1.7
4,097,476	+		Xcc-8004.4282.1	0.20	+0.4
4,097,476	+		Xcc-8004.4282.1	0.20	+0.0
4,097,476	+		Xcc-8004.4282.1	0.20	-0.7
4,097,476	+		Xcc-8004.4282.1	0.20	-0.8
4,097,477	-		Xcc-8004.4282.1	0.20	+0.3
4,097,477	-		Xcc-8004.4282.1	0.20	-1.2
4,097,477	-		Xcc-8004.4282.1	0.20	-1.7
4,097,477	-		Xcc-8004.4282.1	0.20	-0.1
4,097,477	-		Xcc-8004.4282.1	0.20	+0.3
4,097,477	-		Xcc-8004.4282.1	0.20	+0.1
4,097,477	-		Xcc-8004.4282.1	0.20	+0.5
4,097,485	+		Xcc-8004.4282.1	0.21	-0.6
4,097,485	+		Xcc-8004.4282.1	0.21	-0.3
4,097,486	-		Xcc-8004.4282.1	0.22	+1.4
4,097,486	-		Xcc-8004.4282.1	0.22	+0.3
4,097,486	-		Xcc-8004.4282.1	0.22	+1.3
4,097,506	+		Xcc-8004.4282.1	0.24	-0.5
4,097,507	-		Xcc-8004.4282.1	0.24	+0.2
4,097,507	-		Xcc-8004.4282.1	0.24	-0.6
4,097,596	+		Xcc-8004.4282.1	0.36	+0.6
4,097,596	+		Xcc-8004.4282.1	0.36	-0.1
4,097,597	-		Xcc-8004.4282.1	0.36	+0.4
4,097,761	+		Xcc-8004.4282.1	0.57	-0.2
4,097,762	-		Xcc-8004.4282.1	0.57	-1.0
4,097,762	-		Xcc-8004.4282.1	0.57	-1.2
4,097,762	-		Xcc-8004.4282.1	0.57	+0.4
4,097,875	+		Xcc-8004.4282.1	0.72	-0.2
4,097,875	+		Xcc-8004.4282.1	0.72	+0.1
4,097,876	-		Xcc-8004.4282.1	0.72	-0.0
4,097,876	-		Xcc-8004.4282.1	0.72	+0.1
4,098,071	+				-0.4
4,098,074	+				-0.5
4,098,074	+				-0.1
4,098,074	+				+0.1
4,098,074	+				-0.8
4,098,074	+				-1.5
4,098,074	+				-0.2
4,098,074	+				-1.6
4,098,074	+				-0.6
4,098,074	+				+0.5
4,098,075	-				-0.5
4,098,075	-				-0.6
4,098,080	+				+0.1
4,098,080	+				-0.8
4,098,081	-				+0.1
4,098,081	-				-1.5
4,098,081	-				+1.1
4,098,081	-				+0.5
4,098,081	-				+0.1
4,098,285	-		Xcc-8004.4283.1	0.60	-1.2
4,098,285	-		Xcc-8004.4283.1	0.60	-0.9
4,098,499	-				-1.7
4,098,499	-				+0.1
4,098,966	+		Xcc-8004.4284.1	0.49	-0.1
4,098,966	+		Xcc-8004.4284.1	0.49	+0.6
4,098,966	+		Xcc-8004.4284.1	0.49	-2.4
4,098,967	-		Xcc-8004.4284.1	0.49	+0.2
4,098,967	-		Xcc-8004.4284.1	0.49	+0.4
4,098,967	-		Xcc-8004.4284.1	0.49	-0.8
4,098,967	-		Xcc-8004.4284.1	0.49	+0.8
4,098,967	-		Xcc-8004.4284.1	0.49	-1.0
4,099,078	-		Xcc-8004.4284.1	0.65	-0.7
4,099,182	+		Xcc-8004.4284.1	0.80	+0.3
4,099,182	+		Xcc-8004.4284.1	0.80	-1.0
4,099,182	+		Xcc-8004.4284.1	0.80	-0.9
4,099,194	+		Xcc-8004.4284.1	0.82	+0.1
4,099,194	+		Xcc-8004.4284.1	0.82	-0.3
4,099,194	+		Xcc-8004.4284.1	0.82	+0.5
4,099,194	+		Xcc-8004.4284.1	0.82	+1.9
4,099,194	+		Xcc-8004.4284.1	0.82	-0.0
4,099,194	+		Xcc-8004.4284.1	0.82	-1.3
4,099,194	+		Xcc-8004.4284.1	0.82	-0.2
4,099,194	+		Xcc-8004.4284.1	0.82	-0.6
4,099,194	+		Xcc-8004.4284.1	0.82	-1.3
4,099,194	+		Xcc-8004.4284.1	0.82	-1.3
4,099,194	+		Xcc-8004.4284.1	0.82	-0.9
4,099,194	+		Xcc-8004.4284.1	0.82	+0.3
4,099,194	+		Xcc-8004.4284.1	0.82	-1.0
4,099,194	+		Xcc-8004.4284.1	0.82	-0.5
4,099,194	+		Xcc-8004.4284.1	0.82	-0.4
4,099,195	-		Xcc-8004.4284.1	0.82	-0.3
4,099,195	-		Xcc-8004.4284.1	0.82	-0.8
4,099,195	-		Xcc-8004.4284.1	0.82	-0.4
4,099,195	-		Xcc-8004.4284.1	0.82	-0.1
4,099,195	-		Xcc-8004.4284.1	0.82	-1.0
4,099,195	-		Xcc-8004.4284.1	0.82	+0.2
4,099,195	-		Xcc-8004.4284.1	0.82	+0.9
4,099,195	-		Xcc-8004.4284.1	0.82	-0.1
4,099,195	-		Xcc-8004.4284.1	0.82	+0.5
4,099,195	-		Xcc-8004.4284.1	0.82	-0.8
4,099,195	-		Xcc-8004.4284.1	0.82	-1.6
4,099,195	-		Xcc-8004.4284.1	0.82	+1.2
4,099,195	-		Xcc-8004.4284.1	0.82	-0.0
4,099,195	-		Xcc-8004.4284.1	0.82	+0.4
4,099,195	-		Xcc-8004.4284.1	0.82	-0.5
4,099,195	-		Xcc-8004.4284.1	0.82	+0.1
4,099,196	+		Xcc-8004.4284.1	0.82	-0.5
4,099,196	+		Xcc-8004.4284.1	0.82	+0.4
4,099,196	+		Xcc-8004.4284.1	0.82	-1.5
4,099,196	+		Xcc-8004.4284.1	0.82	-0.2
4,099,196	+		Xcc-8004.4284.1	0.82	-0.6
4,099,197	-		Xcc-8004.4284.1	0.82	+1.1
4,099,197	-		Xcc-8004.4284.1	0.82	+0.1
4,099,197	-		Xcc-8004.4284.1	0.82	+0.1
4,099,197	-		Xcc-8004.4284.1	0.82	+0.5
4,099,276	-				+0.8
4,099,320	+				-0.8
4,099,320	+				+0.9
4,099,320	+				+1.0
4,099,320	+				+0.9
4,099,320	+				+2.1
4,099,321	-				+1.4
4,099,321	-				-0.4
4,099,321	-				-0.8
4,099,321	-				+0.9
4,099,321	-				-0.9
4,099,414	+				+0.1
4,099,414	+				-1.0
4,099,414	+				-1.2
4,099,414	+				+0.7
4,099,415	-				-1.7
4,099,418	+				+0.7
4,099,418	+				+0.9
4,099,418	+				-0.7
4,099,418	+				-0.4
4,099,418	+				+0.1
4,099,418	+				-0.3
4,099,418	+				+1.4
4,099,418	+				+0.2
4,099,418	+				-0.1
4,099,419	-				-0.6
4,099,419	-				-1.1
4,099,419	-				+0.9
4,099,419	-				+0.4
4,099,422	+				+0.1
4,099,422	+				-0.8
4,099,423	-				-0.4
4,099,423	-				-1.1