Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4231.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
4,054,636	+		Xcc-8004.4229.1	0.68	+0.6
4,054,636	+		Xcc-8004.4229.1	0.68	+0.8
4,054,636	+		Xcc-8004.4229.1	0.68	-1.0
4,054,637	-		Xcc-8004.4229.1	0.69	-1.6
4,054,637	-		Xcc-8004.4229.1	0.69	-0.8
4,054,637	-		Xcc-8004.4229.1	0.69	-0.3
4,054,778	+				+1.9
4,054,779	-				-0.8
4,055,455	-				+0.4
4,055,455	-				+0.6
4,055,455	-				+0.8
4,055,455	-				-1.1
4,055,455	-				+0.1
4,055,455	-				-0.1
4,055,538	+				+0.3
4,055,538	+				+0.6
4,055,538	+				-0.8
4,055,538	+				+0.0
4,055,538	+				-0.4
4,055,538	+				-1.0
4,055,538	+				+0.5
4,055,538	+				+0.6
4,055,539	-				+0.6
4,055,539	-				+1.2
4,055,539	-				+1.5
4,055,539	-				-0.4
4,055,539	-				-0.6
4,055,539	-				-0.1
4,055,539	-				+0.4
4,055,540	+				-0.4
4,055,540	+				-0.8
4,055,540	+				+1.7
4,055,540	+				+0.2
4,055,541	-				+1.4
4,055,548	+				-1.8
4,055,548	+				+0.9
4,055,548	+				+0.8
4,055,549	-				+0.8
4,055,549	-				+1.0
4,055,549	-				-0.7
4,055,563	-				+0.5
4,055,614	+				-0.3
4,055,615	-				+1.1
4,055,687	+		Xcc-8004.4231.1	0.16	-0.9
4,056,227	-				-0.1
4,056,252	+				+0.6
4,056,252	+				-0.3
4,056,252	+				+0.7
4,056,253	-				-0.3
4,056,253	-				-0.4
4,056,383	+				+0.8
4,056,383	+				+0.6
4,056,383	+				+0.7
4,056,383	+				+0.2
4,056,383	+				+0.3
4,056,383	+				+2.1
4,056,383	+				-0.6
4,056,383	+				+1.3
4,056,384	-				+0.7
4,056,384	-				-1.5
4,056,384	-				+0.8
4,056,384	-				-0.6
4,056,384	-				-0.1
4,056,384	-				-0.6
4,056,384	-				-0.7
4,056,384	-				+0.5
4,056,384	-				-1.6
4,056,384	-				-1.1
4,056,384	-				+0.2
4,056,456	-				+0.3
4,056,456	-				+0.9
4,056,728	+		Xcc-8004.4232.1	0.24	-0.1
4,056,728	+		Xcc-8004.4232.1	0.24	-0.6
4,056,728	+		Xcc-8004.4232.1	0.24	+1.0
4,056,728	+		Xcc-8004.4232.1	0.24	-1.7
4,056,729	-		Xcc-8004.4232.1	0.24	-0.2
4,056,729	-		Xcc-8004.4232.1	0.24	-0.8
4,056,729	-		Xcc-8004.4232.1	0.24	-1.9
4,056,729	-		Xcc-8004.4232.1	0.24	+0.9
4,056,756	+		Xcc-8004.4232.1	0.25	-0.1
4,056,756	+		Xcc-8004.4232.1	0.25	+0.0
4,056,757	-		Xcc-8004.4232.1	0.25	-0.3
4,056,773	+		Xcc-8004.4232.1	0.26	-0.5
4,056,774	-		Xcc-8004.4232.1	0.26	-1.3
4,056,774	-		Xcc-8004.4232.1	0.26	+0.8
4,057,141	+		Xcc-8004.4232.1	0.45	-0.5
4,057,166	+		Xcc-8004.4232.1	0.46	-0.1
4,057,167	-		Xcc-8004.4232.1	0.47	+0.0
4,057,167	-		Xcc-8004.4232.1	0.47	-0.9