Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4199.1 and Xcc-8004.4200.1 are separated by 64 nucleotides Xcc-8004.4200.1 and Xcc-8004.4201.1 are separated by 65 nucleotides Xcc-8004.4201.1 and Xcc-8004.4203.1 are separated by 221 nucleotides
Xcc-8004.4199.1: Xcc-8004.4199.1 - Branched-chain amino acid aminotransferase (EC 2.6.1.42), at 4,030,569 to 4,031,654
Xcc-8004.4199.1
Xcc-8004.4200.1: Xcc-8004.4200.1 - probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly, at 4,031,719 to 4,032,381
Xcc-8004.4200.1
Xcc-8004.4201.1: Xcc-8004.4201.1 - FIG01210375: hypothetical protein, at 4,032,447 to 4,032,866
Xcc-8004.4201.1
Xcc-8004.4203.1: Xcc-8004.4203.1 - RNA polymerase sigma-54 factor RpoN, at 4,033,088 to 4,033,780
Xcc-8004.4203.1
Position (kb) 4031
4032
4033 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4030.919 kb on - strand, within Xcc-8004.4199.1 at 4030.957 kb on + strand, within Xcc-8004.4199.1 at 4030.957 kb on + strand, within Xcc-8004.4199.1 at 4030.957 kb on + strand, within Xcc-8004.4199.1 at 4030.957 kb on + strand, within Xcc-8004.4199.1 at 4030.957 kb on + strand, within Xcc-8004.4199.1 at 4030.957 kb on + strand, within Xcc-8004.4199.1 at 4030.957 kb on + strand, within Xcc-8004.4199.1 at 4030.958 kb on - strand, within Xcc-8004.4199.1 at 4030.958 kb on - strand, within Xcc-8004.4199.1 at 4030.958 kb on - strand, within Xcc-8004.4199.1 at 4030.958 kb on - strand, within Xcc-8004.4199.1 at 4030.958 kb on - strand, within Xcc-8004.4199.1 at 4030.958 kb on - strand, within Xcc-8004.4199.1 at 4031.008 kb on + strand, within Xcc-8004.4199.1 at 4031.009 kb on - strand, within Xcc-8004.4199.1 at 4031.041 kb on + strand, within Xcc-8004.4199.1 at 4031.041 kb on + strand, within Xcc-8004.4199.1 at 4031.042 kb on - strand, within Xcc-8004.4199.1 at 4031.092 kb on + strand, within Xcc-8004.4199.1 at 4031.092 kb on + strand, within Xcc-8004.4199.1 at 4031.093 kb on - strand, within Xcc-8004.4199.1 at 4031.140 kb on + strand, within Xcc-8004.4199.1 at 4031.140 kb on + strand, within Xcc-8004.4199.1 at 4031.140 kb on + strand, within Xcc-8004.4199.1 at 4031.140 kb on + strand, within Xcc-8004.4199.1 at 4031.140 kb on + strand, within Xcc-8004.4199.1 at 4031.141 kb on - strand, within Xcc-8004.4199.1 at 4031.141 kb on - strand, within Xcc-8004.4199.1 at 4031.167 kb on + strand, within Xcc-8004.4199.1 at 4031.167 kb on + strand, within Xcc-8004.4199.1 at 4031.167 kb on + strand, within Xcc-8004.4199.1 at 4031.167 kb on + strand, within Xcc-8004.4199.1 at 4031.167 kb on + strand, within Xcc-8004.4199.1 at 4031.167 kb on + strand, within Xcc-8004.4199.1 at 4031.167 kb on + strand, within Xcc-8004.4199.1 at 4031.167 kb on + strand, within Xcc-8004.4199.1 at 4031.167 kb on + strand, within Xcc-8004.4199.1 at 4031.167 kb on + strand, within Xcc-8004.4199.1 at 4031.167 kb on + strand, within Xcc-8004.4199.1 at 4031.167 kb on + strand, within Xcc-8004.4199.1 at 4031.168 kb on - strand, within Xcc-8004.4199.1 at 4031.168 kb on - strand, within Xcc-8004.4199.1 at 4031.168 kb on - strand, within Xcc-8004.4199.1 at 4031.168 kb on - strand, within Xcc-8004.4199.1 at 4031.168 kb on - strand, within Xcc-8004.4199.1 at 4031.170 kb on + strand, within Xcc-8004.4199.1 at 4031.170 kb on + strand, within Xcc-8004.4199.1 at 4031.170 kb on + strand, within Xcc-8004.4199.1 at 4031.170 kb on + strand, within Xcc-8004.4199.1 at 4031.170 kb on + strand, within Xcc-8004.4199.1 at 4031.170 kb on + strand, within Xcc-8004.4199.1 at 4031.170 kb on + strand, within Xcc-8004.4199.1 at 4031.170 kb on + strand, within Xcc-8004.4199.1 at 4031.171 kb on - strand, within Xcc-8004.4199.1 at 4031.171 kb on - strand, within Xcc-8004.4199.1 at 4031.236 kb on + strand, within Xcc-8004.4199.1 at 4031.236 kb on + strand, within Xcc-8004.4199.1 at 4031.236 kb on + strand, within Xcc-8004.4199.1 at 4031.236 kb on + strand, within Xcc-8004.4199.1 at 4031.237 kb on - strand, within Xcc-8004.4199.1 at 4031.417 kb on - strand, within Xcc-8004.4199.1 at 4031.426 kb on + strand, within Xcc-8004.4199.1 at 4031.426 kb on + strand, within Xcc-8004.4199.1 at 4031.426 kb on + strand, within Xcc-8004.4199.1 at 4031.427 kb on - strand, within Xcc-8004.4199.1 at 4031.427 kb on - strand, within Xcc-8004.4199.1 at 4031.449 kb on + strand, within Xcc-8004.4199.1 at 4031.450 kb on - strand, within Xcc-8004.4199.1 at 4031.450 kb on - strand, within Xcc-8004.4199.1 at 4031.491 kb on + strand, within Xcc-8004.4199.1 at 4031.668 kb on + strand at 4031.669 kb on - strand at 4031.669 kb on - strand at 4032.270 kb on - strand, within Xcc-8004.4200.1 at 4032.270 kb on - strand, within Xcc-8004.4200.1 at 4032.270 kb on - strand, within Xcc-8004.4200.1 at 4032.270 kb on - strand, within Xcc-8004.4200.1 at 4032.270 kb on - strand, within Xcc-8004.4200.1 at 4032.319 kb on + strand at 4032.419 kb on + strand at 4032.419 kb on + strand at 4032.419 kb on + strand at 4032.419 kb on + strand at 4032.419 kb on + strand at 4032.419 kb on + strand at 4032.420 kb on - strand at 4032.420 kb on - strand at 4032.420 kb on - strand at 4032.420 kb on - strand at 4032.420 kb on - strand at 4032.420 kb on - strand at 4032.420 kb on - strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.864 kb on + strand at 4032.885 kb on + strand at 4032.885 kb on + strand at 4032.886 kb on - strand at 4032.886 kb on - strand at 4032.886 kb on - strand at 4032.948 kb on + strand at 4032.949 kb on - strand at 4033.048 kb on + strand at 4033.048 kb on + strand at 4033.049 kb on - strand at 4033.049 kb on - strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.194 kb on - strand, within Xcc-8004.4203.1 at 4033.194 kb on - strand, within Xcc-8004.4203.1 at 4033.194 kb on - strand, within Xcc-8004.4203.1 at 4033.194 kb on - strand, within Xcc-8004.4203.1 at 4033.194 kb on - strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,030,919 - Xcc-8004.4199.1 0.32 -1.7 4,030,957 + Xcc-8004.4199.1 0.36 +1.7 4,030,957 + Xcc-8004.4199.1 0.36 -1.1 4,030,957 + Xcc-8004.4199.1 0.36 +0.5 4,030,957 + Xcc-8004.4199.1 0.36 -0.1 4,030,957 + Xcc-8004.4199.1 0.36 +0.3 4,030,957 + Xcc-8004.4199.1 0.36 -0.1 4,030,957 + Xcc-8004.4199.1 0.36 -0.6 4,030,958 - Xcc-8004.4199.1 0.36 -1.2 4,030,958 - Xcc-8004.4199.1 0.36 +0.9 4,030,958 - Xcc-8004.4199.1 0.36 +0.9 4,030,958 - Xcc-8004.4199.1 0.36 -0.6 4,030,958 - Xcc-8004.4199.1 0.36 -0.2 4,030,958 - Xcc-8004.4199.1 0.36 -0.1 4,031,008 + Xcc-8004.4199.1 0.40 +1.7 4,031,009 - Xcc-8004.4199.1 0.41 +1.2 4,031,041 + Xcc-8004.4199.1 0.43 +0.2 4,031,041 + Xcc-8004.4199.1 0.43 +1.5 4,031,042 - Xcc-8004.4199.1 0.44 -0.1 4,031,092 + Xcc-8004.4199.1 0.48 -1.2 4,031,092 + Xcc-8004.4199.1 0.48 -0.3 4,031,093 - Xcc-8004.4199.1 0.48 -0.6 4,031,140 + Xcc-8004.4199.1 0.53 -0.2 4,031,140 + Xcc-8004.4199.1 0.53 -2.2 4,031,140 + Xcc-8004.4199.1 0.53 +0.0 4,031,140 + Xcc-8004.4199.1 0.53 -0.4 4,031,140 + Xcc-8004.4199.1 0.53 -0.0 4,031,141 - Xcc-8004.4199.1 0.53 -0.4 4,031,141 - Xcc-8004.4199.1 0.53 -0.9 4,031,167 + Xcc-8004.4199.1 0.55 +0.3 4,031,167 + Xcc-8004.4199.1 0.55 +0.8 4,031,167 + Xcc-8004.4199.1 0.55 -0.1 4,031,167 + Xcc-8004.4199.1 0.55 +1.0 4,031,167 + Xcc-8004.4199.1 0.55 -0.6 4,031,167 + Xcc-8004.4199.1 0.55 -0.5 4,031,167 + Xcc-8004.4199.1 0.55 -0.0 4,031,167 + Xcc-8004.4199.1 0.55 +0.0 4,031,167 + Xcc-8004.4199.1 0.55 +0.9 4,031,167 + Xcc-8004.4199.1 0.55 +1.6 4,031,167 + Xcc-8004.4199.1 0.55 -0.4 4,031,167 + Xcc-8004.4199.1 0.55 -0.1 4,031,168 - Xcc-8004.4199.1 0.55 -1.0 4,031,168 - Xcc-8004.4199.1 0.55 -1.2 4,031,168 - Xcc-8004.4199.1 0.55 +1.7 4,031,168 - Xcc-8004.4199.1 0.55 +0.8 4,031,168 - Xcc-8004.4199.1 0.55 -0.6 4,031,170 + Xcc-8004.4199.1 0.55 +0.6 4,031,170 + Xcc-8004.4199.1 0.55 +0.1 4,031,170 + Xcc-8004.4199.1 0.55 +0.9 4,031,170 + Xcc-8004.4199.1 0.55 -0.3 4,031,170 + Xcc-8004.4199.1 0.55 +0.6 4,031,170 + Xcc-8004.4199.1 0.55 -1.5 4,031,170 + Xcc-8004.4199.1 0.55 +0.5 4,031,170 + Xcc-8004.4199.1 0.55 -0.2 4,031,171 - Xcc-8004.4199.1 0.55 +0.6 4,031,171 - Xcc-8004.4199.1 0.55 +1.9 4,031,236 + Xcc-8004.4199.1 0.61 -2.2 4,031,236 + Xcc-8004.4199.1 0.61 -1.8 4,031,236 + Xcc-8004.4199.1 0.61 +0.5 4,031,236 + Xcc-8004.4199.1 0.61 -1.0 4,031,237 - Xcc-8004.4199.1 0.62 -0.7 4,031,417 - Xcc-8004.4199.1 0.78 +0.9 4,031,426 + Xcc-8004.4199.1 0.79 -1.4 4,031,426 + Xcc-8004.4199.1 0.79 -1.2 4,031,426 + Xcc-8004.4199.1 0.79 +1.6 4,031,427 - Xcc-8004.4199.1 0.79 +0.3 4,031,427 - Xcc-8004.4199.1 0.79 +0.5 4,031,449 + Xcc-8004.4199.1 0.81 +0.0 4,031,450 - Xcc-8004.4199.1 0.81 -0.2 4,031,450 - Xcc-8004.4199.1 0.81 -1.2 4,031,491 + Xcc-8004.4199.1 0.85 -0.2 4,031,668 + +1.2 4,031,669 - -0.7 4,031,669 - +0.6 4,032,270 - Xcc-8004.4200.1 0.83 -0.8 4,032,270 - Xcc-8004.4200.1 0.83 -2.0 4,032,270 - Xcc-8004.4200.1 0.83 -1.3 4,032,270 - Xcc-8004.4200.1 0.83 +0.2 4,032,270 - Xcc-8004.4200.1 0.83 -1.5 4,032,319 + +0.7 4,032,419 + +0.4 4,032,419 + +0.2 4,032,419 + -1.6 4,032,419 + +0.8 4,032,419 + -2.6 4,032,419 + -0.2 4,032,420 - +0.0 4,032,420 - +0.1 4,032,420 - +0.7 4,032,420 - -2.1 4,032,420 - -1.4 4,032,420 - -0.8 4,032,420 - -0.8 4,032,825 + -1.0 4,032,825 + -0.2 4,032,825 + +0.5 4,032,825 + -2.2 4,032,825 + +0.3 4,032,825 + -0.2 4,032,825 + -0.4 4,032,825 + +0.5 4,032,825 + +0.6 4,032,825 + +1.2 4,032,825 + +0.5 4,032,826 - -1.2 4,032,826 - -1.8 4,032,826 - +0.4 4,032,826 - +0.1 4,032,826 - -0.2 4,032,826 - -0.4 4,032,826 - -0.2 4,032,826 - +0.1 4,032,826 - -1.9 4,032,826 - +0.9 4,032,826 - -1.4 4,032,826 - -2.0 4,032,826 - +0.6 4,032,826 - -0.9 4,032,826 - -0.7 4,032,864 + -0.7 4,032,885 + -0.1 4,032,885 + +0.2 4,032,886 - -1.8 4,032,886 - -0.1 4,032,886 - -0.5 4,032,948 + +0.7 4,032,949 - -0.7 4,033,048 + +1.0 4,033,048 + -0.3 4,033,049 - +0.7 4,033,049 - +0.7 4,033,072 + -1.1 4,033,072 + -0.2 4,033,072 + +0.0 4,033,072 + +0.2 4,033,072 + -0.7 4,033,072 + -0.3 4,033,072 + -0.6 4,033,072 + +0.5 4,033,072 + +0.7 4,033,073 - +0.6 4,033,073 - -1.2 4,033,073 - -1.5 4,033,073 - +1.8 4,033,073 - -1.5 4,033,073 - -0.1 4,033,073 - -1.1 4,033,073 - +0.9 4,033,073 - -1.1 4,033,073 - +0.9 4,033,073 - -0.1 4,033,073 - +0.1 4,033,073 - -0.2 4,033,073 - +0.3 4,033,073 - +1.7 4,033,193 + Xcc-8004.4203.1 0.15 -1.6 4,033,193 + Xcc-8004.4203.1 0.15 -2.4 4,033,193 + Xcc-8004.4203.1 0.15 -0.2 4,033,193 + Xcc-8004.4203.1 0.15 +1.4 4,033,193 + Xcc-8004.4203.1 0.15 -0.3 4,033,193 + Xcc-8004.4203.1 0.15 +0.5 4,033,193 + Xcc-8004.4203.1 0.15 +0.1 4,033,193 + Xcc-8004.4203.1 0.15 +0.2 4,033,193 + Xcc-8004.4203.1 0.15 -0.6 4,033,194 - Xcc-8004.4203.1 0.15 +0.7 4,033,194 - Xcc-8004.4203.1 0.15 -0.7 4,033,194 - Xcc-8004.4203.1 0.15 +0.6 4,033,194 - Xcc-8004.4203.1 0.15 -1.1 4,033,194 - Xcc-8004.4203.1 0.15 +0.4 4,033,211 + Xcc-8004.4203.1 0.18 +0.6 4,033,211 + Xcc-8004.4203.1 0.18 -0.1 4,033,211 + Xcc-8004.4203.1 0.18 +0.4 4,033,211 + Xcc-8004.4203.1 0.18 +0.9 4,033,211 + Xcc-8004.4203.1 0.18 -0.0 4,033,211 + Xcc-8004.4203.1 0.18 +1.0 4,033,211 + Xcc-8004.4203.1 0.18 -0.7 4,033,211 + Xcc-8004.4203.1 0.18 -1.6 4,033,211 + Xcc-8004.4203.1 0.18 -1.0 4,033,211 + Xcc-8004.4203.1 0.18 +0.4 4,033,212 - Xcc-8004.4203.1 0.18 -0.4 4,033,212 - Xcc-8004.4203.1 0.18 +0.4 4,033,212 - Xcc-8004.4203.1 0.18 -0.4 4,033,212 - Xcc-8004.4203.1 0.18 +0.1 4,033,212 - Xcc-8004.4203.1 0.18 +2.5 4,033,212 - Xcc-8004.4203.1 0.18 -0.9 4,033,212 - Xcc-8004.4203.1 0.18 -0.2 4,033,212 - Xcc-8004.4203.1 0.18 -2.0 4,033,212 - Xcc-8004.4203.1 0.18 -0.5
Or see this region's nucleotide sequence