Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4168.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
4,004,082	-				-0.5
4,004,082	-				-0.8
4,004,095	-				-0.3
4,004,095	-				-0.1
4,004,095	-				+1.5
4,004,095	-				-0.1
4,004,509	+				+2.5
4,004,546	+				-1.3
4,004,547	-				-1.0
4,004,547	-				-0.6
4,004,547	-				-1.3
4,004,547	-				+0.9
4,004,608	-		Xcc-8004.4168.1	0.14	-1.0
4,004,690	+		Xcc-8004.4168.1	0.21	+0.9
4,004,690	+		Xcc-8004.4168.1	0.21	+1.0
4,004,691	-		Xcc-8004.4168.1	0.21	+1.2
4,004,691	-		Xcc-8004.4168.1	0.21	-1.0
4,004,691	-		Xcc-8004.4168.1	0.21	+2.5
4,004,714	+		Xcc-8004.4168.1	0.23	+0.5
4,004,715	-		Xcc-8004.4168.1	0.23	+2.5
4,004,715	-		Xcc-8004.4168.1	0.23	-0.8
4,004,715	-		Xcc-8004.4168.1	0.23	-0.8
4,004,715	-		Xcc-8004.4168.1	0.23	+0.7
4,004,924	+		Xcc-8004.4168.1	0.42	-0.3
4,004,924	+		Xcc-8004.4168.1	0.42	+0.7
4,004,924	+		Xcc-8004.4168.1	0.42	-1.8
4,004,924	+		Xcc-8004.4168.1	0.42	-1.2
4,004,924	+		Xcc-8004.4168.1	0.42	+1.5
4,004,924	+		Xcc-8004.4168.1	0.42	-2.0
4,004,924	+		Xcc-8004.4168.1	0.42	+0.9
4,004,925	-		Xcc-8004.4168.1	0.42	+0.2
4,004,925	-		Xcc-8004.4168.1	0.42	+2.3
4,005,588	+				-2.6
4,005,588	+				+0.9
4,005,588	+				+1.2
4,005,589	-				+0.7
4,005,589	-				+0.7
4,005,589	-				+0.1
4,005,589	-				+0.4
4,005,589	-				-0.1
4,005,589	-				-1.5
4,005,589	-				+0.0
4,005,589	-				+0.1
4,005,589	-				-1.6
4,005,612	+				+0.2
4,005,612	+				-0.7
4,006,181	+				-0.3
4,006,181	+				-0.4
4,006,181	+				-1.0
4,006,181	+				+0.6
4,006,181	+				+0.6
4,006,181	+				-0.5
4,006,181	+				-0.1
4,006,181	+				+0.3
4,006,182	-				-1.3
4,006,182	-				+0.0
4,006,182	-				+0.4
4,006,182	-				-0.3
4,006,182	-				+2.5
4,006,182	-				+1.2
4,006,182	-				+1.3
4,006,192	+				-0.4
4,006,192	+				-0.2
4,006,192	+				-0.1
4,006,192	+				-1.1
4,006,192	+				-1.0
4,006,192	+				-2.8
4,006,192	+				+1.2
4,006,192	+				-1.0
4,006,192	+				+0.8
4,006,192	+				-0.5
4,006,192	+				+0.5
4,006,192	+				-0.4
4,006,192	+				-0.5
4,006,192	+				-1.1
4,006,192	+				+0.8
4,006,192	+				+1.9
4,006,192	+				+0.7
4,006,192	+				+1.7
4,006,192	+				+0.4
4,006,192	+				-0.3
4,006,192	+				-1.0
4,006,192	+				-0.5
4,006,193	-				-0.5
4,006,193	-				-1.4
4,006,193	-				+1.9
4,006,193	-				-0.4
4,006,193	-				+0.7
4,006,193	-				-1.5
4,006,193	-				-1.1
4,006,193	-				-1.5
4,006,193	-				-0.3
4,006,193	-				-0.7
4,006,193	-				-1.6
4,006,193	-				+0.8
4,006,193	-				-0.2
4,006,193	-				-0.9
4,006,193	-				+0.0
4,006,193	-				-0.6
4,006,193	-				-0.3
4,006,193	-				+0.8
4,006,193	-				-0.4
4,006,193	-				-1.4
4,006,193	-				+0.3
4,006,193	-				+0.6
4,006,193	-				-1.8
4,006,193	-				-0.1
4,006,193	-				-0.1
4,006,193	-				-0.7
4,006,193	-				+0.7
4,006,193	-				-0.6
4,006,193	-				-1.5
4,006,193	-				-0.1
4,006,193	-				-0.1
4,006,194	-				-0.7
4,006,198	-				-1.0
4,006,198	-				-0.2
4,006,200	-				+0.2
4,006,245	-				+0.4
4,006,245	-				-1.2
4,006,378	-		Xcc-8004.4170.1	0.21	-0.6
4,006,378	-		Xcc-8004.4170.1	0.21	-0.3
4,006,378	-		Xcc-8004.4170.1	0.21	-2.0