Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4090.1 and Xcc-8004.4091.1 overlap by 53 nucleotides Xcc-8004.4091.1 and Xcc-8004.4092.1 are separated by 17 nucleotides Xcc-8004.4092.1 and Xcc-8004.4093.1 are separated by 189 nucleotides
Xcc-8004.4090.1: Xcc-8004.4090.1 - FIG01211355: hypothetical protein, at 3,949,175 to 3,949,570
Xcc-8004.4090.1
Xcc-8004.4091.1: Xcc-8004.4091.1 - Pseudouridylate synthase, at 3,949,518 to 3,950,375
Xcc-8004.4091.1
Xcc-8004.4092.1: Xcc-8004.4092.1 - FIG01209901: hypothetical protein, at 3,950,393 to 3,950,905
Xcc-8004.4092.1
Xcc-8004.4093.1: Xcc-8004.4093.1 - Outer membrane protein assembly factor YaeT precursor, at 3,951,095 to 3,952,192
Xcc-8004.4093.1
Position (kb) 3950
3951 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.873 kb on + strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3949.874 kb on - strand, within Xcc-8004.4091.1 at 3950.017 kb on + strand, within Xcc-8004.4091.1 at 3950.017 kb on + strand, within Xcc-8004.4091.1 at 3950.017 kb on + strand, within Xcc-8004.4091.1 at 3950.086 kb on + strand, within Xcc-8004.4091.1 at 3950.086 kb on + strand, within Xcc-8004.4091.1 at 3950.086 kb on + strand, within Xcc-8004.4091.1 at 3950.086 kb on + strand, within Xcc-8004.4091.1 at 3950.086 kb on + strand, within Xcc-8004.4091.1 at 3950.086 kb on + strand, within Xcc-8004.4091.1 at 3950.086 kb on + strand, within Xcc-8004.4091.1 at 3950.087 kb on - strand, within Xcc-8004.4091.1 at 3950.087 kb on - strand, within Xcc-8004.4091.1 at 3950.087 kb on - strand, within Xcc-8004.4091.1 at 3950.087 kb on - strand, within Xcc-8004.4091.1 at 3950.087 kb on - strand, within Xcc-8004.4091.1 at 3950.087 kb on - strand, within Xcc-8004.4091.1 at 3950.087 kb on - strand, within Xcc-8004.4091.1 at 3950.087 kb on - strand, within Xcc-8004.4091.1 at 3950.188 kb on - strand, within Xcc-8004.4091.1 at 3950.270 kb on + strand, within Xcc-8004.4091.1 at 3950.270 kb on + strand, within Xcc-8004.4091.1 at 3950.270 kb on + strand, within Xcc-8004.4091.1 at 3950.270 kb on + strand, within Xcc-8004.4091.1 at 3950.271 kb on - strand, within Xcc-8004.4091.1 at 3950.271 kb on - strand, within Xcc-8004.4091.1 at 3950.271 kb on - strand, within Xcc-8004.4091.1 at 3950.271 kb on - strand, within Xcc-8004.4091.1 at 3950.271 kb on - strand, within Xcc-8004.4091.1 at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.394 kb on + strand at 3950.395 kb on - strand at 3950.395 kb on - strand at 3950.395 kb on - strand at 3950.395 kb on - strand at 3950.395 kb on - strand at 3950.395 kb on - strand at 3950.395 kb on - strand at 3950.395 kb on - strand at 3950.395 kb on - strand at 3950.595 kb on + strand, within Xcc-8004.4092.1 at 3950.595 kb on + strand, within Xcc-8004.4092.1 at 3950.595 kb on + strand, within Xcc-8004.4092.1 at 3950.595 kb on + strand, within Xcc-8004.4092.1 at 3950.595 kb on + strand, within Xcc-8004.4092.1 at 3950.595 kb on + strand, within Xcc-8004.4092.1 at 3950.595 kb on + strand, within Xcc-8004.4092.1 at 3950.595 kb on + strand, within Xcc-8004.4092.1 at 3950.595 kb on + strand, within Xcc-8004.4092.1 at 3950.596 kb on - strand, within Xcc-8004.4092.1 at 3950.596 kb on - strand, within Xcc-8004.4092.1 at 3950.596 kb on - strand, within Xcc-8004.4092.1 at 3950.596 kb on - strand, within Xcc-8004.4092.1 at 3950.596 kb on - strand, within Xcc-8004.4092.1 at 3950.596 kb on - strand, within Xcc-8004.4092.1 at 3950.712 kb on + strand, within Xcc-8004.4092.1 at 3950.712 kb on + strand, within Xcc-8004.4092.1 at 3950.712 kb on + strand, within Xcc-8004.4092.1 at 3950.712 kb on + strand, within Xcc-8004.4092.1 at 3950.712 kb on + strand, within Xcc-8004.4092.1 at 3950.712 kb on + strand, within Xcc-8004.4092.1 at 3950.712 kb on + strand, within Xcc-8004.4092.1 at 3950.712 kb on + strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.713 kb on - strand, within Xcc-8004.4092.1 at 3950.763 kb on + strand, within Xcc-8004.4092.1 at 3950.763 kb on + strand, within Xcc-8004.4092.1 at 3950.763 kb on + strand, within Xcc-8004.4092.1 at 3950.763 kb on + strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.764 kb on - strand, within Xcc-8004.4092.1 at 3950.850 kb on + strand, within Xcc-8004.4092.1 at 3950.891 kb on - strand at 3950.896 kb on + strand at 3950.897 kb on - strand at 3950.928 kb on + strand at 3950.928 kb on + strand at 3950.928 kb on + strand at 3950.928 kb on + strand at 3950.928 kb on + strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.929 kb on - strand at 3950.947 kb on + strand at 3950.947 kb on + strand at 3950.947 kb on + strand at 3950.947 kb on + strand at 3950.947 kb on + strand at 3950.947 kb on + strand at 3950.947 kb on + strand at 3950.947 kb on + strand at 3950.948 kb on - strand at 3950.948 kb on - strand at 3950.948 kb on - strand at 3950.948 kb on - strand at 3950.948 kb on - strand at 3950.948 kb on - strand at 3950.948 kb on - strand at 3951.073 kb on + strand at 3951.074 kb on - strand at 3951.074 kb on - strand at 3951.074 kb on - strand at 3951.084 kb on + strand at 3951.084 kb on + strand at 3951.085 kb on - strand at 3951.085 kb on - strand at 3951.085 kb on - strand at 3951.085 kb on - strand at 3951.085 kb on - strand at 3951.096 kb on + strand at 3951.096 kb on + strand at 3951.096 kb on + strand at 3951.096 kb on + strand at 3951.097 kb on - strand at 3951.097 kb on - strand at 3951.097 kb on - strand at 3951.097 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 3,949,873 + Xcc-8004.4091.1 0.41 -1.1 3,949,873 + Xcc-8004.4091.1 0.41 -0.0 3,949,873 + Xcc-8004.4091.1 0.41 -0.3 3,949,873 + Xcc-8004.4091.1 0.41 +0.3 3,949,873 + Xcc-8004.4091.1 0.41 -0.7 3,949,873 + Xcc-8004.4091.1 0.41 -1.8 3,949,873 + Xcc-8004.4091.1 0.41 +0.6 3,949,873 + Xcc-8004.4091.1 0.41 -0.2 3,949,873 + Xcc-8004.4091.1 0.41 +0.2 3,949,873 + Xcc-8004.4091.1 0.41 -1.6 3,949,873 + Xcc-8004.4091.1 0.41 -0.6 3,949,874 - Xcc-8004.4091.1 0.41 +0.2 3,949,874 - Xcc-8004.4091.1 0.41 -1.1 3,949,874 - Xcc-8004.4091.1 0.41 +0.2 3,949,874 - Xcc-8004.4091.1 0.41 -0.6 3,949,874 - Xcc-8004.4091.1 0.41 -0.3 3,949,874 - Xcc-8004.4091.1 0.41 -0.8 3,949,874 - Xcc-8004.4091.1 0.41 -0.8 3,949,874 - Xcc-8004.4091.1 0.41 -0.5 3,949,874 - Xcc-8004.4091.1 0.41 -1.7 3,949,874 - Xcc-8004.4091.1 0.41 +0.8 3,949,874 - Xcc-8004.4091.1 0.41 -0.4 3,949,874 - Xcc-8004.4091.1 0.41 +0.2 3,949,874 - Xcc-8004.4091.1 0.41 -1.0 3,949,874 - Xcc-8004.4091.1 0.41 -0.2 3,949,874 - Xcc-8004.4091.1 0.41 -0.9 3,950,017 + Xcc-8004.4091.1 0.58 -0.0 3,950,017 + Xcc-8004.4091.1 0.58 -1.9 3,950,017 + Xcc-8004.4091.1 0.58 -1.3 3,950,086 + Xcc-8004.4091.1 0.66 -0.3 3,950,086 + Xcc-8004.4091.1 0.66 -0.8 3,950,086 + Xcc-8004.4091.1 0.66 -1.3 3,950,086 + Xcc-8004.4091.1 0.66 +0.4 3,950,086 + Xcc-8004.4091.1 0.66 +0.3 3,950,086 + Xcc-8004.4091.1 0.66 +0.6 3,950,086 + Xcc-8004.4091.1 0.66 -2.6 3,950,087 - Xcc-8004.4091.1 0.66 +0.2 3,950,087 - Xcc-8004.4091.1 0.66 -0.8 3,950,087 - Xcc-8004.4091.1 0.66 +0.2 3,950,087 - Xcc-8004.4091.1 0.66 -0.5 3,950,087 - Xcc-8004.4091.1 0.66 -0.0 3,950,087 - Xcc-8004.4091.1 0.66 +1.2 3,950,087 - Xcc-8004.4091.1 0.66 +0.6 3,950,087 - Xcc-8004.4091.1 0.66 -1.9 3,950,188 - Xcc-8004.4091.1 0.78 +1.7 3,950,270 + Xcc-8004.4091.1 0.88 -0.3 3,950,270 + Xcc-8004.4091.1 0.88 -0.1 3,950,270 + Xcc-8004.4091.1 0.88 -1.8 3,950,270 + Xcc-8004.4091.1 0.88 +0.8 3,950,271 - Xcc-8004.4091.1 0.88 -0.4 3,950,271 - Xcc-8004.4091.1 0.88 +0.3 3,950,271 - Xcc-8004.4091.1 0.88 +0.8 3,950,271 - Xcc-8004.4091.1 0.88 +0.2 3,950,271 - Xcc-8004.4091.1 0.88 +0.2 3,950,394 + -1.2 3,950,394 + +0.5 3,950,394 + -1.3 3,950,394 + -1.8 3,950,394 + -1.0 3,950,394 + -1.3 3,950,394 + -1.9 3,950,394 + +0.0 3,950,394 + -1.2 3,950,394 + -0.9 3,950,394 + +0.4 3,950,394 + +0.0 3,950,394 + -0.1 3,950,394 + -0.1 3,950,394 + -0.8 3,950,394 + +0.0 3,950,395 - +0.0 3,950,395 - +0.2 3,950,395 - +0.6 3,950,395 - +0.1 3,950,395 - +0.6 3,950,395 - +0.1 3,950,395 - -0.8 3,950,395 - +0.3 3,950,395 - -1.7 3,950,595 + Xcc-8004.4092.1 0.39 -0.7 3,950,595 + Xcc-8004.4092.1 0.39 -2.0 3,950,595 + Xcc-8004.4092.1 0.39 -0.2 3,950,595 + Xcc-8004.4092.1 0.39 -0.5 3,950,595 + Xcc-8004.4092.1 0.39 +0.0 3,950,595 + Xcc-8004.4092.1 0.39 -0.3 3,950,595 + Xcc-8004.4092.1 0.39 -0.2 3,950,595 + Xcc-8004.4092.1 0.39 -0.4 3,950,595 + Xcc-8004.4092.1 0.39 -2.0 3,950,596 - Xcc-8004.4092.1 0.40 +0.1 3,950,596 - Xcc-8004.4092.1 0.40 +0.7 3,950,596 - Xcc-8004.4092.1 0.40 -0.5 3,950,596 - Xcc-8004.4092.1 0.40 -1.5 3,950,596 - Xcc-8004.4092.1 0.40 -0.8 3,950,596 - Xcc-8004.4092.1 0.40 -0.7 3,950,712 + Xcc-8004.4092.1 0.62 -1.3 3,950,712 + Xcc-8004.4092.1 0.62 -0.3 3,950,712 + Xcc-8004.4092.1 0.62 -2.3 3,950,712 + Xcc-8004.4092.1 0.62 -1.8 3,950,712 + Xcc-8004.4092.1 0.62 -0.1 3,950,712 + Xcc-8004.4092.1 0.62 -1.9 3,950,712 + Xcc-8004.4092.1 0.62 -2.0 3,950,712 + Xcc-8004.4092.1 0.62 -0.3 3,950,713 - Xcc-8004.4092.1 0.62 -0.6 3,950,713 - Xcc-8004.4092.1 0.62 -0.9 3,950,713 - Xcc-8004.4092.1 0.62 +0.2 3,950,713 - Xcc-8004.4092.1 0.62 +3.2 3,950,713 - Xcc-8004.4092.1 0.62 +0.3 3,950,713 - Xcc-8004.4092.1 0.62 -0.2 3,950,713 - Xcc-8004.4092.1 0.62 -2.6 3,950,713 - Xcc-8004.4092.1 0.62 -0.1 3,950,713 - Xcc-8004.4092.1 0.62 +0.3 3,950,713 - Xcc-8004.4092.1 0.62 +0.6 3,950,763 + Xcc-8004.4092.1 0.72 +1.3 3,950,763 + Xcc-8004.4092.1 0.72 -1.0 3,950,763 + Xcc-8004.4092.1 0.72 -0.5 3,950,763 + Xcc-8004.4092.1 0.72 +0.5 3,950,764 - Xcc-8004.4092.1 0.72 -0.5 3,950,764 - Xcc-8004.4092.1 0.72 -1.2 3,950,764 - Xcc-8004.4092.1 0.72 -1.2 3,950,764 - Xcc-8004.4092.1 0.72 +0.3 3,950,764 - Xcc-8004.4092.1 0.72 -1.4 3,950,764 - Xcc-8004.4092.1 0.72 -1.2 3,950,764 - Xcc-8004.4092.1 0.72 -0.2 3,950,764 - Xcc-8004.4092.1 0.72 +0.3 3,950,764 - Xcc-8004.4092.1 0.72 -1.2 3,950,764 - Xcc-8004.4092.1 0.72 -1.1 3,950,850 + Xcc-8004.4092.1 0.89 -0.5 3,950,891 - -1.6 3,950,896 + -1.0 3,950,897 - +0.3 3,950,928 + -1.9 3,950,928 + -0.8 3,950,928 + -1.2 3,950,928 + +0.6 3,950,928 + -0.4 3,950,929 - -0.5 3,950,929 - +0.4 3,950,929 - +0.1 3,950,929 - +0.3 3,950,929 - +0.7 3,950,929 - -0.4 3,950,929 - -0.3 3,950,929 - -0.8 3,950,929 - +0.8 3,950,929 - -0.9 3,950,929 - -0.8 3,950,929 - -0.2 3,950,929 - +1.7 3,950,929 - +0.1 3,950,929 - +0.6 3,950,929 - -0.8 3,950,929 - +1.3 3,950,929 - -0.6 3,950,929 - +0.9 3,950,929 - +1.2 3,950,947 + -1.0 3,950,947 + -2.2 3,950,947 + -0.9 3,950,947 + -0.3 3,950,947 + -2.8 3,950,947 + -0.2 3,950,947 + +0.5 3,950,947 + +0.0 3,950,948 - -1.4 3,950,948 - -0.3 3,950,948 - -0.2 3,950,948 - -0.6 3,950,948 - -1.1 3,950,948 - -0.2 3,950,948 - +1.1 3,951,073 + -0.6 3,951,074 - -0.3 3,951,074 - -2.4 3,951,074 - -0.7 3,951,084 + +0.9 3,951,084 + -1.8 3,951,085 - +0.1 3,951,085 - -0.6 3,951,085 - +0.9 3,951,085 - +2.1 3,951,085 - -4.1 3,951,096 + +0.2 3,951,096 + +0.2 3,951,096 + -0.4 3,951,096 + +0.9 3,951,097 - +1.2 3,951,097 - -0.5 3,951,097 - -3.2 3,951,097 - -2.4
Or see this region's nucleotide sequence