Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4039.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
3,901,798	+		Xcc-8004.4038.1	0.13	+0.3
3,901,799	-		Xcc-8004.4038.1	0.13	-0.7
3,901,799	-		Xcc-8004.4038.1	0.13	-0.4
3,901,847	+		Xcc-8004.4038.1	0.23	+0.9
3,901,847	+		Xcc-8004.4038.1	0.23	+0.2
3,901,848	-		Xcc-8004.4038.1	0.23	-0.7
3,902,080	+		Xcc-8004.4038.1	0.71	-0.7
3,902,140	+		Xcc-8004.4038.1	0.83	-0.7
3,902,140	+		Xcc-8004.4038.1	0.83	+0.8
3,902,142	+		Xcc-8004.4038.1	0.84	-2.3
3,902,196	+				+0.4
3,902,197	-				-1.9
3,902,227	+				+0.2
3,902,227	+				+1.2
3,902,227	+				-1.1
3,902,228	-				-0.9
3,902,228	-				-0.7
3,902,228	-				-1.1
3,902,241	+				-0.9
3,902,241	+				-0.5
3,902,241	+				+0.7
3,902,241	+				+1.0
3,902,241	+				-0.2
3,902,242	-				-0.6
3,902,242	-				+0.6
3,902,242	-				-0.2
3,902,242	-				+0.2
3,902,242	-				-0.5
3,902,242	-				+1.3
3,902,243	+				-0.9
3,902,243	+				-0.8
3,902,244	-				+0.4
3,902,244	-				-0.5
3,902,244	-				+0.2
3,902,404	+				-1.1
3,902,404	+				-0.3
3,902,404	+				+0.6
3,902,404	+				-0.2
3,902,417	+				+0.6
3,902,418	-				-0.7
3,902,418	-				-0.7
3,902,440	+				+0.2
3,902,441	-				-0.5
3,902,441	-				-0.1
3,902,441	-				+0.2
3,902,441	-				+0.1
3,902,450	-				-0.3
3,902,450	-				-0.3
3,902,585	+				-0.0
3,902,586	-				-0.8
3,902,586	-				-0.2
3,902,605	+				-0.3
3,902,606	-				-1.9
3,902,606	-				-0.4
3,902,606	-				-0.2
3,902,698	+				+0.1
3,902,698	+				-0.7
3,902,699	-				-0.5
3,902,762	+				+0.8
3,902,763	-				+0.6
3,902,792	+				-0.7
3,902,793	-				+0.9
3,902,793	-				-0.7
3,902,816	+				+0.5
3,902,816	+				+0.6
3,902,817	-				+2.5
3,902,817	-				-0.8
3,902,817	-				-1.3
3,902,895	+				+0.2
3,902,895	+				-0.7
3,902,896	-				-3.1
3,902,917	-				+0.5
3,902,936	+				+0.5
3,903,298	-		Xcc-8004.4039.1	0.27	+1.5
3,903,450	-		Xcc-8004.4039.1	0.35	-1.7
3,903,905	+		Xcc-8004.4039.1	0.58	-2.1
3,903,974	+		Xcc-8004.4039.1	0.62	-1.6
3,904,026	-		Xcc-8004.4039.1	0.64	-1.8
3,904,026	-		Xcc-8004.4039.1	0.64	-0.3
3,904,322	+		Xcc-8004.4039.1	0.79	-0.3
3,904,482	+		Xcc-8004.4039.1	0.87	-1.6
3,904,634	+				+1.9
3,904,634	+				-0.6
3,904,634	+				-0.5
3,904,634	+				+0.5
3,904,635	-				+1.5
3,904,635	-				+2.5
3,904,635	-				-0.7
3,904,635	-				+1.5
3,904,635	-				+2.1
3,904,767	+				+0.6
3,904,768	-				+0.3
3,904,807	+				+0.8
3,904,808	-				+0.7
3,904,989	-				+0.4
3,905,173	-				-0.2
3,905,173	-				+0.6
3,905,173	-				+0.3
3,905,617	-				-0.1
3,905,663	-				+0.0