Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3986.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
3,863,815	+				+0.8
3,863,920	-				-0.1
3,863,920	-				+0.6
3,864,092	+		Xcc-8004.3984.1	0.30	-1.4
3,864,092	+		Xcc-8004.3984.1	0.30	-0.8
3,864,092	+		Xcc-8004.3984.1	0.30	+0.6
3,864,092	+		Xcc-8004.3984.1	0.30	-0.2
3,864,093	-		Xcc-8004.3984.1	0.30	+0.3
3,864,093	-		Xcc-8004.3984.1	0.30	+0.8
3,864,093	-		Xcc-8004.3984.1	0.30	+0.0
3,864,134	+		Xcc-8004.3984.1	0.40	+0.1
3,864,134	+		Xcc-8004.3984.1	0.40	-0.5
3,864,134	+		Xcc-8004.3984.1	0.40	-1.1
3,864,134	+		Xcc-8004.3984.1	0.40	+0.9
3,864,134	+		Xcc-8004.3984.1	0.40	+1.5
3,864,134	+		Xcc-8004.3984.1	0.40	-0.4
3,864,134	+		Xcc-8004.3984.1	0.40	-1.2
3,864,134	+		Xcc-8004.3984.1	0.40	+0.0
3,864,135	-		Xcc-8004.3984.1	0.40	-0.2
3,864,135	-		Xcc-8004.3984.1	0.40	-2.4
3,864,135	-		Xcc-8004.3984.1	0.40	-0.7
3,864,135	-		Xcc-8004.3984.1	0.40	-1.3
3,864,135	-		Xcc-8004.3984.1	0.40	+0.0
3,864,135	-		Xcc-8004.3984.1	0.40	+0.2
3,864,135	-		Xcc-8004.3984.1	0.40	-0.1
3,864,135	-		Xcc-8004.3984.1	0.40	+0.0
3,864,135	-		Xcc-8004.3984.1	0.40	-0.8
3,864,180	+		Xcc-8004.3984.1	0.50	+1.1
3,864,206	-		Xcc-8004.3984.1	0.56	-1.3
3,864,325	+		Xcc-8004.3984.1	0.83	-1.8
3,864,326	-		Xcc-8004.3984.1	0.84	-1.5
3,864,367	+				+0.1
3,864,367	+				-0.3
3,864,367	+				-0.9
3,864,368	-				+0.5
3,864,377	+				-0.3
3,864,377	+				+0.0
3,864,377	+				-0.0
3,864,377	+				-0.3
3,864,377	+				+0.0
3,864,377	+				+0.8
3,864,377	+				-0.8
3,864,377	+				+0.8
3,864,378	-				-1.7
3,864,378	-				+1.4
3,864,378	-				+0.4
3,864,478	+				+1.0
3,864,478	+				-0.4
3,864,479	-				+0.7
3,864,479	-				+0.3
3,864,479	-				-0.7
3,864,479	-				+0.8
3,864,493	-				+0.7
3,864,493	-				+0.4
3,864,514	+				+0.7
3,864,515	-				+0.3
3,864,533	+				-0.1
3,864,533	+				-1.0
3,864,536	+				-0.1
3,864,536	+				-0.3
3,864,537	-				-0.4
3,864,553	+				+1.4
3,864,553	+				+0.4
3,864,553	+				+0.9
3,864,553	+				+0.8
3,864,553	+				-0.5
3,864,554	-				-0.1
3,864,554	-				-0.5
3,864,561	+				-1.7
3,864,561	+				+0.7
3,864,569	-				-0.4
3,864,569	-				-0.3
3,864,585	+				+0.6
3,864,585	+				+0.0
3,864,586	-				-0.6
3,864,586	-				+1.2
3,865,387	-				+0.7
3,865,387	-				-0.1
3,865,396	+				+0.6
3,865,408	-		Xcc-8004.3987.1	0.11	+0.4
3,865,408	-		Xcc-8004.3987.1	0.11	+0.2
3,865,429	-		Xcc-8004.3987.1	0.13	+0.9
3,865,429	-		Xcc-8004.3987.1	0.13	-0.3
3,865,457	-		Xcc-8004.3987.1	0.16	+0.5
3,865,463	+		Xcc-8004.3987.1	0.17	-0.1
3,865,474	-		Xcc-8004.3987.1	0.18	-1.0
3,865,474	-		Xcc-8004.3987.1	0.18	+0.7
3,865,565	+		Xcc-8004.3987.1	0.29	-0.5
3,865,565	+		Xcc-8004.3987.1	0.29	-0.7
3,865,565	+		Xcc-8004.3987.1	0.29	+0.4
3,865,609	+		Xcc-8004.3987.1	0.34	-1.1
3,865,635	+		Xcc-8004.3987.1	0.37	-0.4
3,865,635	+		Xcc-8004.3987.1	0.37	+1.2
3,865,639	+		Xcc-8004.3987.1	0.37	+0.6
3,865,640	-		Xcc-8004.3987.1	0.37	+0.0
3,865,640	-		Xcc-8004.3987.1	0.37	-0.5
3,865,673	+		Xcc-8004.3987.1	0.41	-1.3
3,865,673	+		Xcc-8004.3987.1	0.41	-0.4
3,865,673	+		Xcc-8004.3987.1	0.41	-1.0
3,865,673	+		Xcc-8004.3987.1	0.41	-0.0
3,865,673	+		Xcc-8004.3987.1	0.41	+0.5
3,865,674	-		Xcc-8004.3987.1	0.41	-1.1
3,865,674	-		Xcc-8004.3987.1	0.41	+0.3
3,865,719	+		Xcc-8004.3987.1	0.46	-0.3
3,865,720	-		Xcc-8004.3987.1	0.46	+1.5
3,865,720	-		Xcc-8004.3987.1	0.46	+0.5
3,865,755	-		Xcc-8004.3987.1	0.50	+0.4
3,865,755	-		Xcc-8004.3987.1	0.50	-0.1
3,865,831	-		Xcc-8004.3987.1	0.59	+0.8
3,865,875	+		Xcc-8004.3987.1	0.64	+0.2
3,865,884	+		Xcc-8004.3987.1	0.65	+0.8
3,865,988	+		Xcc-8004.3987.1	0.77	+1.4
3,865,988	+		Xcc-8004.3987.1	0.77	+0.3
3,865,988	+		Xcc-8004.3987.1	0.77	-0.2
3,865,988	+		Xcc-8004.3987.1	0.77	+1.3
3,865,988	+		Xcc-8004.3987.1	0.77	+0.6
3,865,989	-		Xcc-8004.3987.1	0.77	-0.2
3,865,989	-		Xcc-8004.3987.1	0.77	+0.5
3,865,989	-		Xcc-8004.3987.1	0.77	-1.0
3,865,989	-		Xcc-8004.3987.1	0.77	-1.2
3,865,989	-		Xcc-8004.3987.1	0.77	-0.5
3,865,989	-		Xcc-8004.3987.1	0.77	+0.9
3,865,989	-		Xcc-8004.3987.1	0.77	-0.5
3,866,001	+		Xcc-8004.3987.1	0.78	+0.8
3,866,001	+		Xcc-8004.3987.1	0.78	-0.8
3,866,001	+		Xcc-8004.3987.1	0.78	-0.8
3,866,002	-		Xcc-8004.3987.1	0.78	+1.0
3,866,002	-		Xcc-8004.3987.1	0.78	-0.1
3,866,002	-		Xcc-8004.3987.1	0.78	-1.0
3,866,002	-		Xcc-8004.3987.1	0.78	+0.2
3,866,002	-		Xcc-8004.3987.1	0.78	-0.3
3,866,002	-		Xcc-8004.3987.1	0.78	+0.2
3,866,002	-		Xcc-8004.3987.1	0.78	-1.6
3,866,002	-		Xcc-8004.3987.1	0.78	-1.2
3,866,002	-		Xcc-8004.3987.1	0.78	+0.7
3,866,002	-		Xcc-8004.3987.1	0.78	-0.2
3,866,002	-		Xcc-8004.3987.1	0.78	+0.3
3,866,002	-		Xcc-8004.3987.1	0.78	-0.5
3,866,002	-		Xcc-8004.3987.1	0.78	-0.0
3,866,003	+		Xcc-8004.3987.1	0.79	-0.2
3,866,003	+		Xcc-8004.3987.1	0.79	+0.5
3,866,003	+		Xcc-8004.3987.1	0.79	+0.6
3,866,003	+		Xcc-8004.3987.1	0.79	+1.2
3,866,003	+		Xcc-8004.3987.1	0.79	+0.4
3,866,003	+		Xcc-8004.3987.1	0.79	+0.2
3,866,003	+		Xcc-8004.3987.1	0.79	+1.4
3,866,004	-		Xcc-8004.3987.1	0.79	-2.5
3,866,004	-		Xcc-8004.3987.1	0.79	-0.5
3,866,004	-		Xcc-8004.3987.1	0.79	+1.7
3,866,004	-		Xcc-8004.3987.1	0.79	-1.0
3,866,004	-		Xcc-8004.3987.1	0.79	+0.3
3,866,004	-		Xcc-8004.3987.1	0.79	+0.8
3,866,004	-		Xcc-8004.3987.1	0.79	+0.2
3,866,004	-		Xcc-8004.3987.1	0.79	+0.0
3,866,004	-		Xcc-8004.3987.1	0.79	-0.6
3,866,004	-		Xcc-8004.3987.1	0.79	+0.0
3,866,004	-		Xcc-8004.3987.1	0.79	-1.2
3,866,007	+		Xcc-8004.3987.1	0.79	+0.0
3,866,007	+		Xcc-8004.3987.1	0.79	+1.3
3,866,007	+		Xcc-8004.3987.1	0.79	-0.5
3,866,008	-		Xcc-8004.3987.1	0.79	-0.0
3,866,008	-		Xcc-8004.3987.1	0.79	-1.7
3,866,008	-		Xcc-8004.3987.1	0.79	+0.7
3,866,008	-		Xcc-8004.3987.1	0.79	-0.6
3,866,008	-		Xcc-8004.3987.1	0.79	-0.4
3,866,008	-		Xcc-8004.3987.1	0.79	-0.5
3,866,008	-		Xcc-8004.3987.1	0.79	+0.0
3,866,008	-		Xcc-8004.3987.1	0.79	+1.0
3,866,190	+				-1.5
3,866,190	+				-0.6
3,866,190	+				-2.2
3,866,190	+				-1.5
3,866,190	+				+0.8
3,866,190	+				-0.6
3,866,190	+				+0.1
3,866,190	+				+1.1
3,866,190	+				-1.1
3,866,190	+				+0.5
3,866,190	+				-2.0
3,866,190	+				-0.3
3,866,190	+				-0.4
3,866,190	+				+0.9
3,866,190	+				+0.7
3,866,190	+				-0.6
3,866,190	+				+0.7
3,866,190	+				+1.1
3,866,191	-				+0.2
3,866,191	-				+2.5
3,866,191	-				+1.2
3,866,191	-				+0.4
3,866,191	-				-0.4
3,866,191	-				+0.4
3,866,191	-				+0.4
3,866,191	-				-0.3
3,866,191	-				-0.2
3,866,191	-				-0.3
3,866,191	-				-0.2
3,866,191	-				+0.3
3,866,191	-				-2.1
3,866,191	-				+0.8
3,866,191	-				-1.8
3,866,191	-				+1.4
3,866,191	-				+1.1
3,866,191	-				-0.5
3,866,191	-				+1.2
3,866,191	-				-1.3
3,866,191	-				-0.2
3,866,222	+				+0.2
3,866,222	+				-0.7
3,866,222	+				-1.1
3,866,223	-				+0.9
3,866,223	-				+1.0
3,866,223	-				+0.8
3,866,281	+				-0.2
3,866,281	+				-0.1
3,866,281	+				-0.8
3,866,281	+				-0.6
3,866,281	+				+1.4
3,866,281	+				+0.5
3,866,281	+				+1.3
3,866,281	+				+0.3
3,866,281	+				-1.0
3,866,281	+				+0.8
3,866,282	-				-1.3
3,866,282	-				+0.3
3,866,282	-				+0.5
3,866,282	-				-0.5
3,866,282	-				-0.2
3,866,282	-				-0.6
3,866,282	-				+0.4
3,866,282	-				+0.5
3,866,282	-				+1.0