Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3980.1 and Xcc-8004.3981.1 are separated by 75 nucleotides Xcc-8004.3981.1 and Xcc-8004.3982.1 are separated by 97 nucleotides
Xcc-8004.3980.1: Xcc-8004.3980.1 - 2-methylcitrate synthase (EC 2.3.3.5), at 3,859,455 to 3,860,609
Xcc-8004.3980.1
Xcc-8004.3981.1: Xcc-8004.3981.1 - Methylisocitrate lyase (EC 4.1.3.30), at 3,860,685 to 3,861,581
Xcc-8004.3981.1
Xcc-8004.3982.1: Xcc-8004.3982.1 - Propionate catabolism operon regulatory protein PrpR, at 3,861,679 to 3,863,328
Xcc-8004.3982.1
Position (kb) 3860
3861
3862 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3859.714 kb on + strand, within Xcc-8004.3980.1 at 3859.714 kb on + strand, within Xcc-8004.3980.1 at 3859.714 kb on + strand, within Xcc-8004.3980.1 at 3859.715 kb on - strand, within Xcc-8004.3980.1 at 3859.715 kb on - strand, within Xcc-8004.3980.1 at 3859.715 kb on - strand, within Xcc-8004.3980.1 at 3859.795 kb on + strand, within Xcc-8004.3980.1 at 3859.880 kb on - strand, within Xcc-8004.3980.1 at 3859.966 kb on + strand, within Xcc-8004.3980.1 at 3859.966 kb on + strand, within Xcc-8004.3980.1 at 3859.966 kb on + strand, within Xcc-8004.3980.1 at 3859.967 kb on - strand, within Xcc-8004.3980.1 at 3859.967 kb on - strand, within Xcc-8004.3980.1 at 3859.967 kb on - strand, within Xcc-8004.3980.1 at 3860.167 kb on + strand, within Xcc-8004.3980.1 at 3860.167 kb on + strand, within Xcc-8004.3980.1 at 3860.173 kb on + strand, within Xcc-8004.3980.1 at 3860.174 kb on - strand, within Xcc-8004.3980.1 at 3860.179 kb on + strand, within Xcc-8004.3980.1 at 3860.180 kb on - strand, within Xcc-8004.3980.1 at 3860.180 kb on - strand, within Xcc-8004.3980.1 at 3860.485 kb on + strand, within Xcc-8004.3980.1 at 3860.495 kb on - strand at 3860.537 kb on + strand at 3860.538 kb on - strand at 3860.649 kb on - strand at 3860.729 kb on - strand at 3860.729 kb on - strand at 3860.729 kb on - strand at 3860.737 kb on + strand at 3860.752 kb on + strand at 3860.753 kb on - strand at 3860.753 kb on - strand at 3860.821 kb on + strand, within Xcc-8004.3981.1 at 3860.821 kb on + strand, within Xcc-8004.3981.1 at 3860.986 kb on + strand, within Xcc-8004.3981.1 at 3860.986 kb on + strand, within Xcc-8004.3981.1 at 3860.987 kb on - strand, within Xcc-8004.3981.1 at 3860.987 kb on - strand, within Xcc-8004.3981.1 at 3861.001 kb on + strand, within Xcc-8004.3981.1 at 3861.002 kb on - strand, within Xcc-8004.3981.1 at 3861.020 kb on + strand, within Xcc-8004.3981.1 at 3861.284 kb on + strand, within Xcc-8004.3981.1 at 3861.445 kb on + strand, within Xcc-8004.3981.1 at 3861.445 kb on + strand, within Xcc-8004.3981.1 at 3861.445 kb on + strand, within Xcc-8004.3981.1 at 3861.446 kb on - strand, within Xcc-8004.3981.1 at 3861.446 kb on - strand, within Xcc-8004.3981.1 at 3861.446 kb on - strand, within Xcc-8004.3981.1 at 3861.446 kb on - strand, within Xcc-8004.3981.1 at 3861.446 kb on - strand, within Xcc-8004.3981.1 at 3861.446 kb on - strand, within Xcc-8004.3981.1 at 3861.446 kb on - strand, within Xcc-8004.3981.1 at 3861.634 kb on - strand at 3861.956 kb on - strand, within Xcc-8004.3982.1 at 3861.956 kb on - strand, within Xcc-8004.3982.1 at 3862.265 kb on - strand, within Xcc-8004.3982.1 at 3862.343 kb on + strand, within Xcc-8004.3982.1 at 3862.436 kb on - strand, within Xcc-8004.3982.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X remove 3,859,714 + Xcc-8004.3980.1 0.22 -0.4 3,859,714 + Xcc-8004.3980.1 0.22 +0.8 3,859,714 + Xcc-8004.3980.1 0.22 +0.9 3,859,715 - Xcc-8004.3980.1 0.23 +0.6 3,859,715 - Xcc-8004.3980.1 0.23 +0.8 3,859,715 - Xcc-8004.3980.1 0.23 -0.1 3,859,795 + Xcc-8004.3980.1 0.29 -2.0 3,859,880 - Xcc-8004.3980.1 0.37 -0.7 3,859,966 + Xcc-8004.3980.1 0.44 +1.1 3,859,966 + Xcc-8004.3980.1 0.44 -0.7 3,859,966 + Xcc-8004.3980.1 0.44 +0.8 3,859,967 - Xcc-8004.3980.1 0.44 +0.5 3,859,967 - Xcc-8004.3980.1 0.44 +1.5 3,859,967 - Xcc-8004.3980.1 0.44 -0.1 3,860,167 + Xcc-8004.3980.1 0.62 -1.2 3,860,167 + Xcc-8004.3980.1 0.62 -0.1 3,860,173 + Xcc-8004.3980.1 0.62 +0.0 3,860,174 - Xcc-8004.3980.1 0.62 +0.9 3,860,179 + Xcc-8004.3980.1 0.63 +0.8 3,860,180 - Xcc-8004.3980.1 0.63 +1.5 3,860,180 - Xcc-8004.3980.1 0.63 +0.9 3,860,485 + Xcc-8004.3980.1 0.89 +0.7 3,860,495 - -1.0 3,860,537 + +1.9 3,860,538 - -0.7 3,860,649 - -0.2 3,860,729 - -0.9 3,860,729 - -0.5 3,860,729 - -1.7 3,860,737 + -0.5 3,860,752 + -0.2 3,860,753 - -0.4 3,860,753 - +1.2 3,860,821 + Xcc-8004.3981.1 0.15 +0.9 3,860,821 + Xcc-8004.3981.1 0.15 +1.9 3,860,986 + Xcc-8004.3981.1 0.34 +0.2 3,860,986 + Xcc-8004.3981.1 0.34 +0.3 3,860,987 - Xcc-8004.3981.1 0.34 +0.0 3,860,987 - Xcc-8004.3981.1 0.34 +0.3 3,861,001 + Xcc-8004.3981.1 0.35 +1.0 3,861,002 - Xcc-8004.3981.1 0.35 -0.4 3,861,020 + Xcc-8004.3981.1 0.37 +1.6 3,861,284 + Xcc-8004.3981.1 0.67 -1.4 3,861,445 + Xcc-8004.3981.1 0.85 +0.1 3,861,445 + Xcc-8004.3981.1 0.85 +0.7 3,861,445 + Xcc-8004.3981.1 0.85 -1.6 3,861,446 - Xcc-8004.3981.1 0.85 +0.2 3,861,446 - Xcc-8004.3981.1 0.85 +0.4 3,861,446 - Xcc-8004.3981.1 0.85 +1.2 3,861,446 - Xcc-8004.3981.1 0.85 +0.1 3,861,446 - Xcc-8004.3981.1 0.85 +0.4 3,861,446 - Xcc-8004.3981.1 0.85 +1.0 3,861,446 - Xcc-8004.3981.1 0.85 +1.2 3,861,634 - +0.8 3,861,956 - Xcc-8004.3982.1 0.17 -0.9 3,861,956 - Xcc-8004.3982.1 0.17 -1.1 3,862,265 - Xcc-8004.3982.1 0.36 +0.4 3,862,343 + Xcc-8004.3982.1 0.40 -1.0 3,862,436 - Xcc-8004.3982.1 0.46 +0.1
Or see this region's nucleotide sequence