Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3955.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
3,829,099	+				-0.2
3,829,099	+				+0.1
3,829,099	+				-0.8
3,829,101	+				-0.5
3,829,101	+				-1.5
3,829,101	+				-1.0
3,829,101	+				-0.5
3,829,101	+				+0.5
3,829,101	+				-1.0
3,829,101	+				-1.8
3,829,101	+				-0.5
3,829,101	+				-0.8
3,829,101	+				+0.4
3,829,101	+				+1.8
3,829,101	+				-0.2
3,829,101	+				+0.9
3,829,101	+				-0.0
3,829,102	-				+0.1
3,829,102	-				-0.4
3,829,102	-				-1.0
3,829,102	-				-0.2
3,829,102	-				+0.5
3,829,102	-				-0.6
3,829,102	-				-0.6
3,829,102	-				+0.4
3,829,170	-				-0.6
3,829,236	-				+1.5
3,829,253	+		Xcc-8004.3954.1	0.12	-1.1
3,829,253	+		Xcc-8004.3954.1	0.12	-0.5
3,829,263	-		Xcc-8004.3954.1	0.13	+1.5
3,829,263	-		Xcc-8004.3954.1	0.13	-1.5
3,829,295	+		Xcc-8004.3954.1	0.17	+0.7
3,829,296	-		Xcc-8004.3954.1	0.17	+0.2
3,829,296	-		Xcc-8004.3954.1	0.17	-0.2
3,829,719	-		Xcc-8004.3954.1	0.66	+1.0
3,829,719	-		Xcc-8004.3954.1	0.66	+0.4
3,829,742	+		Xcc-8004.3954.1	0.69	-1.3
3,829,742	+		Xcc-8004.3954.1	0.69	+0.2
3,829,742	+		Xcc-8004.3954.1	0.69	-1.0
3,829,742	+		Xcc-8004.3954.1	0.69	+0.2
3,829,743	-		Xcc-8004.3954.1	0.69	-1.2
3,829,743	-		Xcc-8004.3954.1	0.69	+0.3
3,829,794	-		Xcc-8004.3954.1	0.75	+2.5
3,829,843	+		Xcc-8004.3954.1	0.80	+1.5
3,830,151	-		Xcc-8004.3955.1	0.12	+0.3
3,830,200	+		Xcc-8004.3955.1	0.16	+0.5
3,830,200	+		Xcc-8004.3955.1	0.16	-0.7
3,830,200	+		Xcc-8004.3955.1	0.16	+0.2
3,830,200	+		Xcc-8004.3955.1	0.16	+1.1
3,830,200	+		Xcc-8004.3955.1	0.16	+0.5
3,830,200	+		Xcc-8004.3955.1	0.16	+1.5
3,830,200	+		Xcc-8004.3955.1	0.16	+2.5
3,830,201	-		Xcc-8004.3955.1	0.16	+0.3
3,830,201	-		Xcc-8004.3955.1	0.16	+1.5
3,830,201	-		Xcc-8004.3955.1	0.16	-1.8
3,830,201	-		Xcc-8004.3955.1	0.16	-1.5
3,830,201	-		Xcc-8004.3955.1	0.16	-1.7
3,830,201	-		Xcc-8004.3955.1	0.16	-1.2
3,830,308	+		Xcc-8004.3955.1	0.26	+1.5
3,830,308	+		Xcc-8004.3955.1	0.26	-1.1
3,830,309	-		Xcc-8004.3955.1	0.26	-0.9
3,830,572	+		Xcc-8004.3955.1	0.49	-0.3
3,830,573	-		Xcc-8004.3955.1	0.49	+0.2
3,830,573	-		Xcc-8004.3955.1	0.49	+1.5
3,830,573	-		Xcc-8004.3955.1	0.49	-0.1
3,830,731	+		Xcc-8004.3955.1	0.63	+2.0
3,830,731	+		Xcc-8004.3955.1	0.63	+0.9
3,830,731	+		Xcc-8004.3955.1	0.63	-0.7
3,830,731	+		Xcc-8004.3955.1	0.63	+0.5
3,830,732	-		Xcc-8004.3955.1	0.63	+1.8
3,830,732	-		Xcc-8004.3955.1	0.63	-1.1
3,830,732	-		Xcc-8004.3955.1	0.63	+2.5
3,830,755	+		Xcc-8004.3955.1	0.65	+0.3
3,831,226	+				-2.0
3,831,226	+				+0.2
3,831,227	-				+1.4
3,831,227	-				-0.3
3,831,227	-				-1.2
3,831,227	-				+0.4
3,831,227	-				+0.1
3,831,229	+				-0.6
3,831,229	+				+0.2
3,831,229	+				-0.1
3,831,229	+				+0.6
3,831,230	-				+0.7
3,831,230	-				+1.0
3,831,230	-				+0.8
3,831,281	+				-1.8
3,831,352	+				+0.9
3,831,352	+				-0.5
3,831,353	-				-0.3
3,831,439	-				+0.5
3,831,657	+				-0.3
3,831,657	+				-1.1
3,831,658	-				+0.6
3,831,705	+				+0.4
3,831,744	-				+1.0
3,831,784	-				+0.9
3,831,872	+				-1.0
3,831,873	-				-1.7
3,831,896	+				-0.9
3,831,896	+				+0.6
3,831,896	+				-1.0
3,831,896	+				-0.2
3,831,896	+				+1.0
3,831,897	-				+0.2
3,831,897	-				-1.1
3,831,897	-				-1.1
3,831,897	-				+0.5
3,831,923	+				-0.5
3,831,924	-				+0.8
3,831,997	-				-0.8
3,831,997	-				-0.2
3,832,011	+				+0.7
3,832,011	+				+0.5
3,832,051	+				+0.6
3,832,051	+				-0.0
3,832,070	-				+0.0
3,832,070	-				+0.6
3,832,079	+				-0.3
3,832,079	+				-1.4
3,832,080	-				+0.5