Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3903.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
3,770,832	+		Xcc-8004.3901.1	0.16	+0.7
3,771,358	-		Xcc-8004.3902.1	0.29	-1.4
3,771,723	+				+0.6
3,771,723	+				-0.8
3,771,723	+				-0.5
3,771,724	-				+0.6
3,771,724	-				-0.7
3,771,724	-				-0.1
3,771,724	-				+0.9
3,771,724	-				-1.1
3,771,724	-				+0.1
3,771,724	-				+0.5
3,771,895	-				-0.4
3,771,896	+				-3.2
3,771,896	+				-0.3
3,771,896	+				-2.0
3,771,896	+				-1.2
3,771,896	+				+0.7
3,771,897	-				-0.8
3,771,897	-				+0.5
3,772,453	+		Xcc-8004.3903.1	0.51	-0.5
3,772,454	-		Xcc-8004.3903.1	0.51	+0.1
3,772,587	-		Xcc-8004.3903.1	0.61	-0.4
3,772,674	-		Xcc-8004.3903.1	0.67	-2.1
3,772,674	-		Xcc-8004.3903.1	0.67	-0.6
3,772,988	+				+1.8
3,772,988	+				+0.2
3,772,989	-				-1.8
3,772,989	-				-0.0
3,772,989	-				-0.8
3,772,989	-				+0.7
3,772,989	-				-0.2
3,772,989	-				+0.2
3,772,989	-				+2.8
3,773,319	+		Xcc-8004.3904.1	0.60	+1.1
3,773,319	+		Xcc-8004.3904.1	0.60	-0.3
3,773,319	+		Xcc-8004.3904.1	0.60	-1.0
3,773,319	+		Xcc-8004.3904.1	0.60	-1.1
3,773,320	-		Xcc-8004.3904.1	0.60	+0.8
3,773,320	-		Xcc-8004.3904.1	0.60	-0.1
3,773,484	+		Xcc-8004.3905.1	0.17	-0.2
3,773,485	-		Xcc-8004.3905.1	0.17	+0.7
3,773,631	-		Xcc-8004.3905.1	0.42	-0.0
3,773,748	+		Xcc-8004.3905.1	0.63	+0.1
3,773,893	+		Xcc-8004.3905.1	0.88	+0.1
3,773,893	+		Xcc-8004.3905.1	0.88	-1.1
3,773,975	+				+0.6
3,773,975	+				+1.3
3,773,975	+				+0.2
3,773,976	-				+0.3
3,773,976	-				+0.1
3,774,064	-				-0.0