Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3898.1

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3896.1 and Xcc-8004.3897.1 are separated by 9 nucleotidesXcc-8004.3897.1 and Xcc-8004.3898.1 are separated by 1 nucleotidesXcc-8004.3898.1 and Xcc-8004.3900.1 are separated by 277 nucleotides Xcc-8004.3896.1: Xcc-8004.3896.1 - hypothetical protein, at 3,767,017 to 3,768,435 Xcc-8004.3896.1 Xcc-8004.3897.1: Xcc-8004.3897.1 - RecA/RadA recombinase, at 3,768,445 to 3,769,095 Xcc-8004.3897.1 Xcc-8004.3898.1: Xcc-8004.3898.1 - SOS-response repressor and protease LexA (EC 3.4.21.88), at 3,769,097 to 3,769,702 Xcc-8004.3898.1 Xcc-8004.3900.1: Xcc-8004.3900.1 - TolA protein, at 3,769,980 to 3,770,609 Xcc-8004.3900.1 Position (kb) 3769 3770Strain fitness (log2 ratio) -3 -2 -1 0 1at 3768.162 kb on + strand, within Xcc-8004.3896.1at 3768.162 kb on + strand, within Xcc-8004.3896.1at 3768.162 kb on + strand, within Xcc-8004.3896.1at 3768.163 kb on - strand, within Xcc-8004.3896.1at 3768.221 kb on + strand, within Xcc-8004.3896.1at 3768.222 kb on - strand, within Xcc-8004.3896.1at 3768.222 kb on - strand, within Xcc-8004.3896.1at 3768.713 kb on - strand, within Xcc-8004.3897.1at 3768.797 kb on + strand, within Xcc-8004.3897.1at 3768.797 kb on + strand, within Xcc-8004.3897.1at 3768.797 kb on + strand, within Xcc-8004.3897.1at 3768.798 kb on - strand, within Xcc-8004.3897.1at 3768.798 kb on - strand, within Xcc-8004.3897.1at 3768.940 kb on + strand, within Xcc-8004.3897.1at 3768.940 kb on + strand, within Xcc-8004.3897.1at 3768.940 kb on + strand, within Xcc-8004.3897.1at 3769.123 kb on - strandat 3769.362 kb on + strand, within Xcc-8004.3898.1at 3769.730 kb on + strandat 3769.819 kb on + strandat 3769.819 kb on + strandat 3769.819 kb on + strandat 3769.820 kb on - strandat 3769.820 kb on - strandat 3769.820 kb on - strandat 3769.820 kb on - strandat 3769.828 kb on + strandat 3770.105 kb on + strand, within Xcc-8004.3900.1at 3770.105 kb on + strand, within Xcc-8004.3900.1at 3770.105 kb on + strand, within Xcc-8004.3900.1at 3770.105 kb on + strand, within Xcc-8004.3900.1at 3770.106 kb on - strand, within Xcc-8004.3900.1at 3770.106 kb on - strand, within Xcc-8004.3900.1at 3770.531 kb on - strand, within Xcc-8004.3900.1at 3770.546 kb on + strand, within Xcc-8004.3900.1at 3770.547 kb on - strandat 3770.669 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,768,162 + Xcc-8004.3896.1 0.81 +1.2
3,768,162 + Xcc-8004.3896.1 0.81 +0.0
3,768,162 + Xcc-8004.3896.1 0.81 +0.7
3,768,163 - Xcc-8004.3896.1 0.81 -0.3
3,768,221 + Xcc-8004.3896.1 0.85 +0.9
3,768,222 - Xcc-8004.3896.1 0.85 -1.0
3,768,222 - Xcc-8004.3896.1 0.85 -0.7
3,768,713 - Xcc-8004.3897.1 0.41 +0.4
3,768,797 + Xcc-8004.3897.1 0.54 +0.2
3,768,797 + Xcc-8004.3897.1 0.54 +0.1
3,768,797 + Xcc-8004.3897.1 0.54 +0.4
3,768,798 - Xcc-8004.3897.1 0.54 +0.3
3,768,798 - Xcc-8004.3897.1 0.54 +1.0
3,768,940 + Xcc-8004.3897.1 0.76 -1.2
3,768,940 + Xcc-8004.3897.1 0.76 +0.3
3,768,940 + Xcc-8004.3897.1 0.76 -0.5
3,769,123 - -0.3
3,769,362 + Xcc-8004.3898.1 0.44 -1.1
3,769,730 + +1.0
3,769,819 + -1.1
3,769,819 + +0.4
3,769,819 + -2.8
3,769,820 - -0.3
3,769,820 - -1.0
3,769,820 - -1.5
3,769,820 - -1.7
3,769,828 + -1.9
3,770,105 + Xcc-8004.3900.1 0.20 -0.6
3,770,105 + Xcc-8004.3900.1 0.20 +0.0
3,770,105 + Xcc-8004.3900.1 0.20 +0.2
3,770,105 + Xcc-8004.3900.1 0.20 -0.2
3,770,106 - Xcc-8004.3900.1 0.20 +0.2
3,770,106 - Xcc-8004.3900.1 0.20 +0.1
3,770,531 - Xcc-8004.3900.1 0.87 +1.5
3,770,546 + Xcc-8004.3900.1 0.90 +0.8
3,770,547 - -1.4
3,770,669 + +0.1

Or see this region's nucleotide sequence